You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
CLEOSim's adding coordinates appears to run into problems trying to re-create the xi variable (since I just copy-and-pasted code from Brian to create the x, y, and z variables)
Nathan's experience:
I caught another cleosim/Brian2 interaction bug while working on getting the Wilmes and Clopath simulation going. Brian2 uses the name "xi" as a special variable for white noise https://brian2.readthedocs.io/en/stable/user/equations.html. For some reason, in cleosim utilities, you redefine xi again, the same way Brian2 does. This creates the error: KeyError: "The name 'xi' is already present in the variables dictionary.". Adding a suffix (as Brian2 allows for) to the xi name, still gets the error again. (For instance I renamed xi to xi_model and got KeyError: "The name 'xi_model' is already present in the variables dictionary.")
...
This bug was not showing up when I was just putting the brian2 network into a cleosim sim, but is now showing up that I am assigning coordinates using assign_coords_rand_rect_prism
CLEOSim's adding coordinates appears to run into problems trying to re-create the xi variable (since I just copy-and-pasted code from Brian to create the x, y, and z variables)
Nathan's experience:
Look at # Stochastic variables in utilities.py
The text was updated successfully, but these errors were encountered: