From d25c5b4f31905beb1d68f5beb5b30853132df2db Mon Sep 17 00:00:00 2001
From: Jerome Dockes <jerome@dockes.org>
Date: Mon, 2 Dec 2024 12:18:12 +0100
Subject: [PATCH 1/2] add python 3.13

---
 .github/workflows/testing.yml |    2 +-
 pixi.lock                     | 8714 +++++++++++++++++++++------------
 pyproject.toml                |    6 +
 3 files changed, 5487 insertions(+), 3235 deletions(-)

diff --git a/.github/workflows/testing.yml b/.github/workflows/testing.yml
index 812f3c14d..87366e776 100644
--- a/.github/workflows/testing.yml
+++ b/.github/workflows/testing.yml
@@ -20,7 +20,7 @@ jobs:
             ci-py309-min-optional-deps,
             ci-py311-transformers,
             ci-py312-latest-deps,
-            ci-py312-latest-optional-deps
+            ci-py313-latest-optional-deps
         ]
     runs-on: ${{ matrix.os }}
     steps:
diff --git a/pixi.lock b/pixi.lock
index f3853c190..92cf6eec6 100644
--- a/pixi.lock
+++ b/pixi.lock
@@ -22,7 +22,7 @@ environments:
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       - conda: https://conda.anaconda.org/conda-forge/noarch/charset-normalizer-3.4.0-pyhd8ed1ab_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/colorama-0.4.6-pyhd8ed1ab_0.tar.bz2
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/coverage-7.6.7-py39h9399b63_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/coverage-7.6.8-py39h9399b63_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/cycler-0.12.1-pyhd8ed1ab_0.conda
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       - conda: https://conda.anaconda.org/conda-forge/noarch/docutils-0.21.2-pyhd8ed1ab_0.conda
@@ -67,8 +67,8 @@ environments:
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       - conda: https://conda.anaconda.org/conda-forge/linux-64/libcap-2.69-h0f662aa_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libcblas-3.9.0-20_linux64_openblas.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/libclang-cpp19.1-19.1.3-default_hb5137d0_0.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/libclang13-19.1.3-default_h9c6a7e4_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libclang-cpp19.1-19.1.4-default_hb5137d0_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libclang13-19.1.4-default_h9c6a7e4_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libcups-2.3.3-h4637d8d_4.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libdeflate-1.22-hb9d3cd8_0.conda
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@@ -80,7 +80,10 @@ environments:
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       - conda: https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-14.2.0-h69a702a_1.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/libgcrypt-1.11.0-h4ab18f5_1.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libgcrypt-1.11.0-ha770c72_2.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libgcrypt-devel-1.11.0-hb9d3cd8_2.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libgcrypt-lib-1.11.0-hb9d3cd8_2.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libgcrypt-tools-1.11.0-hb9d3cd8_2.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libgettextpo-0.22.5-he02047a_3.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libgettextpo-devel-0.22.5-he02047a_3.conda
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@@ -95,14 +98,14 @@ environments:
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-      - conda: https://conda.anaconda.org/conda-forge/linux-64/libllvm19-19.1.3-ha7bfdaf_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libllvm19-19.1.4-ha7bfdaf_1.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.1-hd590300_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libogg-1.3.5-h4ab18f5_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libopenblas-0.3.25-pthreads_h413a1c8_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libopus-1.3.1-h7f98852_1.tar.bz2
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libpciaccess-0.18-hd590300_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libpng-1.6.44-hadc24fc_0.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/libpq-16.5-h2d7952a_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libpq-16.6-h2d7952a_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libsndfile-1.2.2-hc60ed4a_1.conda
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@@ -126,7 +129,7 @@ environments:
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       - conda: https://conda.anaconda.org/conda-forge/linux-64/nspr-4.36-h5888daf_0.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/nss-3.106-hdf54f9c_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/nss-3.107-hdf54f9c_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/numpy-1.23.5-py39h3d75532_0.conda
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       - conda: https://conda.anaconda.org/conda-forge/linux-64/openjpeg-2.5.2-h488ebb8_0.conda
@@ -146,7 +149,7 @@ environments:
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       - conda: https://conda.anaconda.org/conda-forge/linux-64/pyqt5-sip-12.12.2-py39h3d6467e_5.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/pysocks-1.7.1-pyha2e5f31_6.tar.bz2
-      - conda: https://conda.anaconda.org/conda-forge/noarch/pytest-8.3.3-pyhd8ed1ab_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/pytest-8.3.4-pyhd8ed1ab_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/pytest-cov-6.0.0-pyhd8ed1ab_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/pytest-xdist-3.6.1-pyhd8ed1ab_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/python-3.9.20-h13acc7a_1_cpython.conda
@@ -158,7 +161,7 @@ environments:
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       - conda: https://conda.anaconda.org/conda-forge/linux-64/scipy-1.9.3-py39hddc5342_2.tar.bz2
-      - conda: https://conda.anaconda.org/conda-forge/noarch/setuptools-75.5.0-pyhff2d567_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/setuptools-75.6.0-pyhff2d567_1.conda
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@@ -173,8 +176,8 @@ environments:
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-      - conda: https://conda.anaconda.org/conda-forge/linux-64/tornado-6.4.1-py39h8cd3c5a_1.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/tomli-2.2.1-pyhd8ed1ab_0.conda
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       - conda: https://conda.anaconda.org/conda-forge/noarch/tzdata-2024b-hc8b5060_0.conda
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@@ -196,7 +199,7 @@ environments:
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-      - conda: https://conda.anaconda.org/conda-forge/noarch/zipp-3.21.0-pyhd8ed1ab_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/zipp-3.21.0-pyhd8ed1ab_1.conda
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   license: Apache-2.0
   license_family: APACHE
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-  timestamp: 1731793321044
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   - libbrotlienc >=1.1.0,<1.2.0a0
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   - libbrotlidec >=1.1.0,<1.2.0a0
   - libbrotlienc >=1.1.0,<1.2.0a0
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   - libre2-11 >=2024.7.2
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   - parquet-cpp <0.0a0
   license: Apache-2.0
-  license_family: APACHE
   purls: []
-  size: 8714651
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   - libgoogle-cloud-storage >=2.31.0,<2.32.0a0
   - libre2-11 >=2024.7.2
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   - arrow-cpp <0.0a0
   - parquet-cpp <0.0a0
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   license: Apache-2.0
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-  size: 5213890
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   - azure-storage-files-datalake-cpp >=12.12.0,<12.12.1.0a0
   - bzip2 >=1.0.8,<2.0a0
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   - glog >=0.7.1,<0.8.0a0
   - libabseil * cxx17*
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   - libbrotlidec >=1.1.0,<1.2.0a0
   - libbrotlienc >=1.1.0,<1.2.0a0
-  - libcxx >=18
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   - libgoogle-cloud-storage >=2.31.0,<2.32.0a0
   - libre2-11 >=2024.7.2
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   - zstd >=1.5.6,<1.6.0a0
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   license: Apache-2.0
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   license: Apache-2.0
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   license: Apache-2.0
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+  - __osx >=10.13
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   license: Apache-2.0
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   license: Apache-2.0
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   license: Apache-2.0
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   purls: []
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+- kind: conda
+  name: zstandard
+  version: 0.23.0
+  build: py313h80202fe_1
+  build_number: 1
+  subdir: linux-64
+  url: https://conda.anaconda.org/conda-forge/linux-64/zstandard-0.23.0-py313h80202fe_1.conda
+  sha256: ea82f2b8964150a3aa7373b4697e48e64f2200fe68ae554ee85c641c692d1c97
+  md5: c178558ff516cd507763ffee230c20b2
+  depends:
+  - __glibc >=2.17,<3.0.a0
+  - cffi >=1.11
+  - libgcc >=13
+  - python >=3.13.0rc1,<3.14.0a0
+  - python_abi 3.13.* *_cp313
+  - zstd >=1.5.6,<1.5.7.0a0
+  - zstd >=1.5.6,<1.6.0a0
+  license: BSD-3-Clause
+  license_family: BSD
+  purls:
+  - pkg:pypi/zstandard?source=conda-forge-mapping
+  size: 424424
+  timestamp: 1725305749031
+- kind: conda
+  name: zstandard
+  version: 0.23.0
+  build: py313hab0894d_1
+  build_number: 1
+  subdir: osx-64
+  url: https://conda.anaconda.org/conda-forge/osx-64/zstandard-0.23.0-py313hab0894d_1.conda
+  sha256: 4b976b0c6f5c1a2c94c5351fbc02b1cad44dbeaf2e288986827e8b2183a14ce6
+  md5: 27fe151b0b0752c1ad1c47106855efd9
+  depends:
+  - __osx >=10.13
+  - cffi >=1.11
+  - python >=3.13.0rc1,<3.14.0a0
+  - python_abi 3.13.* *_cp313
+  - zstd >=1.5.6,<1.5.7.0a0
+  - zstd >=1.5.6,<1.6.0a0
+  license: BSD-3-Clause
+  license_family: BSD
+  purls:
+  - pkg:pypi/zstandard?source=conda-forge-mapping
+  size: 417943
+  timestamp: 1725305677487
+- kind: conda
+  name: zstandard
+  version: 0.23.0
+  build: py313hf2da073_1
+  build_number: 1
+  subdir: osx-arm64
+  url: https://conda.anaconda.org/conda-forge/osx-arm64/zstandard-0.23.0-py313hf2da073_1.conda
+  sha256: 12b4e34acff24d291e2626c6610dfd819b8d99a461025ae59affcb6e84bc1d57
+  md5: deebca66926691fadaaf16da05ecb5f9
+  depends:
+  - __osx >=11.0
+  - cffi >=1.11
+  - python >=3.13.0rc1,<3.14.0a0
+  - python >=3.13.0rc1,<3.14.0a0 *_cp313
+  - python_abi 3.13.* *_cp313
+  - zstd >=1.5.6,<1.5.7.0a0
+  - zstd >=1.5.6,<1.6.0a0
+  license: BSD-3-Clause
+  license_family: BSD
+  purls:
+  - pkg:pypi/zstandard?source=conda-forge-mapping
+  size: 336496
+  timestamp: 1725305912716
 - kind: conda
   name: zstandard
   version: 0.23.0
@@ -31661,7 +33907,7 @@ packages:
   license: BSD-3-Clause
   license_family: BSD
   purls:
-  - pkg:pypi/zstandard?source=hash-mapping
+  - pkg:pypi/zstandard?source=conda-forge-mapping
   size: 407017
   timestamp: 1725305769438
 - kind: conda
@@ -31685,7 +33931,7 @@ packages:
   license: BSD-3-Clause
   license_family: BSD
   purls:
-  - pkg:pypi/zstandard?source=hash-mapping
+  - pkg:pypi/zstandard?source=conda-forge-mapping
   size: 311116
   timestamp: 1725305993710
 - kind: conda
@@ -31707,7 +33953,7 @@ packages:
   license: BSD-3-Clause
   license_family: BSD
   purls:
-  - pkg:pypi/zstandard?source=hash-mapping
+  - pkg:pypi/zstandard?source=conda-forge-mapping
   size: 401328
   timestamp: 1725305650930
 - kind: conda
@@ -31730,7 +33976,7 @@ packages:
   license: BSD-3-Clause
   license_family: BSD
   purls:
-  - pkg:pypi/zstandard?source=hash-mapping
+  - pkg:pypi/zstandard?source=conda-forge-mapping
   size: 320027
   timestamp: 1725305723442
 - kind: conda
diff --git a/pyproject.toml b/pyproject.toml
index 95c5af819..75ce53361 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -19,6 +19,7 @@ classifiers = [
     "Programming Language :: Python :: 3.10",
     "Programming Language :: Python :: 3.11",
     "Programming Language :: Python :: 3.12",
+    "Programming Language :: Python :: 3.13",
     "Topic :: Scientific/Engineering",
     "Topic :: Software Development :: Libraries",
 ]
@@ -165,6 +166,9 @@ python = "~=3.11.0"
 [tool.pixi.feature.py312.dependencies]
 python = "~=3.12.0"
 
+[tool.pixi.feature.py313.dependencies]
+python = "~=3.13.0"
+
 [tool.pixi.feature.doc.tasks]
 build-doc = { cmd = "make html", cwd = "doc" }
 build-doc-quick = { cmd = "make html-noplot", cwd = "doc" }
@@ -186,6 +190,8 @@ ci-py309-min-optional-deps = ["py309", "min-dependencies", "min-optional-depende
 ci-py311-transformers = ["py311", "transformers", "test"]
 ci-py312-latest-deps = ["py312", "test"]
 ci-py312-latest-optional-deps = ["py312", "optional", "test"]
+ci-py313-latest-deps = ["py313", "test"]
+ci-py313-latest-optional-deps = ["py313", "optional", "test"]
 
 [tool.black]
 line-length = 88

From b3c03b4b09b01af331ab5ba1d213a84fbc7e0bb2 Mon Sep 17 00:00:00 2001
From: Jerome Dockes <jerome@dockes.org>
Date: Thu, 5 Dec 2024 16:31:10 +0100
Subject: [PATCH 2/2] use 3.13 for latest deps too

---
 .github/workflows/testing.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/testing.yml b/.github/workflows/testing.yml
index 87366e776..db068281f 100644
--- a/.github/workflows/testing.yml
+++ b/.github/workflows/testing.yml
@@ -19,7 +19,7 @@ jobs:
             ci-py309-min-deps,
             ci-py309-min-optional-deps,
             ci-py311-transformers,
-            ci-py312-latest-deps,
+            ci-py313-latest-deps,
             ci-py313-latest-optional-deps
         ]
     runs-on: ${{ matrix.os }}