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FHIR DocumentReference.type from i2b2 ObservationFact #115

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comorbidity opened this issue Dec 27, 2022 · 1 comment
Closed

FHIR DocumentReference.type from i2b2 ObservationFact #115

comorbidity opened this issue Dec 27, 2022 · 1 comment

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@comorbidity
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actual: DocumentReference.type is entered as "text" , which is removed by DEID and also doesn't include the code.
docref.type = CodeableConcept({'text': str(obsfact.concept_cd)}) # i2b2 Note Type
Expected:
code = obsfact.concept_cd
display = obsfact.TVAL_CHAR
coding = fhir_comon.fhir_coding(None, code, display)
docref.type = CodeableConcept(.... coding ...)

note coding.system is not required
https://build.fhir.org/datatypes-definitions.html#Coding.system
@mikix
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mikix commented Dec 28, 2022

Fixed by #108

@mikix mikix closed this as completed Dec 28, 2022
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@mikix @comorbidity