From 14e1e8a41c184d8c89cbc2608d7e3ea7dd723e9d Mon Sep 17 00:00:00 2001
From: Matt Garber <matthew.garber@childrens.harvard.edu>
Date: Fri, 30 Aug 2024 14:12:43 -0400
Subject: [PATCH 1/2] Added static description tables

---
 .gitignore                                    |    2 +-
 .sqlfluffignore                               |    1 +
 cumulus_library_umls/.DS_Store                |  Bin 0 -> 6148 bytes
 cumulus_library_umls/{umls => }/manifest.toml |    3 +-
 .../reference_sql/static_builder.sql          |   69 ++
 .../reference_sql/umls_builder.sql            |  347 ++++++
 cumulus_library_umls/static_builder.py        |  160 +++
 cumulus_library_umls/static_files/.DS_Store   |  Bin 0 -> 6148 bytes
 .../static_files/SemGroups_2018.txt           |  127 ++
 .../static_files/SemanticTypes_2018AB.txt     |  127 ++
 .../static_files/umls_rel.tsv                 |   14 +
 .../static_files/umls_rela.tsv                | 1024 +++++++++++++++++
 .../static_files/umls_tty.tsv                 |  243 ++++
 .../static_files/umls_tui.tsv                 |  128 +++
 .../{umls => }/umls_builder.py                |    0
 tests/test_static_builder.py                  |   73 ++
 tests/test_umls_builder.py                    |    2 +-
 17 files changed, 2317 insertions(+), 3 deletions(-)
 create mode 100644 .sqlfluffignore
 create mode 100644 cumulus_library_umls/.DS_Store
 rename cumulus_library_umls/{umls => }/manifest.toml (69%)
 create mode 100644 cumulus_library_umls/reference_sql/static_builder.sql
 create mode 100644 cumulus_library_umls/reference_sql/umls_builder.sql
 create mode 100644 cumulus_library_umls/static_builder.py
 create mode 100644 cumulus_library_umls/static_files/.DS_Store
 create mode 100644 cumulus_library_umls/static_files/SemGroups_2018.txt
 create mode 100644 cumulus_library_umls/static_files/SemanticTypes_2018AB.txt
 create mode 100644 cumulus_library_umls/static_files/umls_rel.tsv
 create mode 100644 cumulus_library_umls/static_files/umls_rela.tsv
 create mode 100644 cumulus_library_umls/static_files/umls_tty.tsv
 create mode 100644 cumulus_library_umls/static_files/umls_tui.tsv
 rename cumulus_library_umls/{umls => }/umls_builder.py (100%)
 create mode 100644 tests/test_static_builder.py

diff --git a/.gitignore b/.gitignore
index e8c465f..47d9100 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,6 +1,6 @@
 downloads/
 generated_parquet/
-
+*.parquet
 # project specific
 downloads/
 generated_parquet/
diff --git a/.sqlfluffignore b/.sqlfluffignore
new file mode 100644
index 0000000..344ba51
--- /dev/null
+++ b/.sqlfluffignore
@@ -0,0 +1 @@
+cumulus_library_umls/reference_sql
\ No newline at end of file
diff --git a/cumulus_library_umls/.DS_Store b/cumulus_library_umls/.DS_Store
new file mode 100644
index 0000000000000000000000000000000000000000..5008ddfcf53c02e82d7eee2e57c38e5672ef89f6
GIT binary patch
literal 6148
zcmeH~Jr2S!425mzP>H1@V-^m;4Wg<&0T*E43hX&L&p$$qDprKhvt+--jT7}7np#A3
zem<@ulZcFPQ@L2!n>{z**<q8>++&mCkOWA81W14cNZ<zv;LbK1Poaz?KmsK2CSc!(
z0ynLxE!0092;Krf2c+FF_Fe*7ECH>lEfg7;MkzE(HCqgga^y>{tEnwC%0;vJ&^%eQ
zLs35+`xjp>T0<F0fCPF1$Cyrb|F7^5{eNG?83~ZUUlGt@xh*qZDeu<Z%US-OSsOPv
j)R!Z4KLME7ReXlK;d!wEw5GODWMKRea10D2@KpjYNUI8I

literal 0
HcmV?d00001

diff --git a/cumulus_library_umls/umls/manifest.toml b/cumulus_library_umls/manifest.toml
similarity index 69%
rename from cumulus_library_umls/umls/manifest.toml
rename to cumulus_library_umls/manifest.toml
index ef5a223..e038d2f 100644
--- a/cumulus_library_umls/umls/manifest.toml
+++ b/cumulus_library_umls/manifest.toml
@@ -2,7 +2,8 @@ study_prefix = "umls"
 
 [table_builder_config]
 file_names = [
-    "umls_builder.py"
+    "umls_builder.py",
+    "static_builder.py"
 ]
 
 [advanced_options]
diff --git a/cumulus_library_umls/reference_sql/static_builder.sql b/cumulus_library_umls/reference_sql/static_builder.sql
new file mode 100644
index 0000000..dbe4fce
--- /dev/null
+++ b/cumulus_library_umls/reference_sql/static_builder.sql
@@ -0,0 +1,69 @@
+-- noqa: disable=all
+-- This sql was autogenerated as a reference example using the library
+-- CLI. Its format is tied to the specific database it was run against,
+-- and it may not be correct for all databases. Use the CLI's build 
+-- option to derive the best SQL for your dataset.
+
+-- ###########################################################
+
+CREATE EXTERNAL TABLE IF NOT EXISTS `umls`.`umls__semantic_types` (
+    abbrev STRING,
+    TUI STRING,
+    full_type_name STRING
+)
+STORED AS PARQUET
+LOCATION 's3://bucket/db_path/umls/SemanticTypes_2018AB'
+tblproperties ("parquet.compression"="SNAPPY");
+
+-- ###########################################################
+
+CREATE EXTERNAL TABLE IF NOT EXISTS `umls`.`umls__semantic_groups` (
+    abbrev STRING,
+    group_name STRING,
+    TUI STRING,
+    full_type_name STRING
+)
+STORED AS PARQUET
+LOCATION 's3://bucket/db_path/umls/SemGroups_2018'
+tblproperties ("parquet.compression"="SNAPPY");
+
+-- ###########################################################
+
+CREATE EXTERNAL TABLE IF NOT EXISTS `umls`.`umls__rel_description` (
+    REL STRING,
+    REL_STR STRING
+)
+STORED AS PARQUET
+LOCATION 's3://bucket/db_path/umls_rel'
+tblproperties ("parquet.compression"="SNAPPY");
+
+-- ###########################################################
+
+CREATE EXTERNAL TABLE IF NOT EXISTS `umls`.`umls__rela_description` (
+    RELA STRING,
+    RELA_STR STRING
+)
+STORED AS PARQUET
+LOCATION 's3://bucket/db_path/umls_rela'
+tblproperties ("parquet.compression"="SNAPPY");
+
+-- ###########################################################
+
+CREATE EXTERNAL TABLE IF NOT EXISTS `umls`.`umls__tty_description` (
+    TTY STRING,
+    TTY_STR STRING
+)
+STORED AS PARQUET
+LOCATION 's3://bucket/db_path/umls_tty'
+tblproperties ("parquet.compression"="SNAPPY");
+
+-- ###########################################################
+
+CREATE EXTERNAL TABLE IF NOT EXISTS `umls`.`umls__tui_description` (
+    STY STRING,
+    TUI STRING,
+    TUI_STR STRING
+)
+STORED AS PARQUET
+LOCATION 's3://bucket/db_path/umls_tui'
+tblproperties ("parquet.compression"="SNAPPY");
diff --git a/cumulus_library_umls/reference_sql/umls_builder.sql b/cumulus_library_umls/reference_sql/umls_builder.sql
new file mode 100644
index 0000000..3a52586
--- /dev/null
+++ b/cumulus_library_umls/reference_sql/umls_builder.sql
@@ -0,0 +1,347 @@
+-- noqa: disable=all
+-- This sql was autogenerated as a reference example using the library
+-- CLI. Its format is tied to the specific database it was run against,
+-- and it may not be correct for all databases. Use the CLI's build 
+-- option to derive the best SQL for your dataset.
+
+-- ###########################################################
+
+CREATE EXTERNAL TABLE IF NOT EXISTS `umls`.`umls__MRHIST` (
+    CUI String,
+    SOURCEUI String,
+    SAB String,
+    SVER String,
+    CHANGETYPE String,
+    CHANGEKEY String,
+    CHANGEVAL String,
+    REASON String,
+    CVF Integer
+)
+STORED AS PARQUET
+LOCATION 's3://bucket/db_path/umls/MRHIST'
+tblproperties ("parquet.compression"="SNAPPY");
+
+-- ###########################################################
+
+CREATE EXTERNAL TABLE IF NOT EXISTS `umls`.`umls__MRCONSO` (
+    CUI String,
+    LAT String,
+    TS String,
+    LUI String,
+    STT String,
+    SUI String,
+    ISPREF String,
+    AUI String,
+    SAUI String,
+    SCUI String,
+    SDUI String,
+    SAB String,
+    TTY String,
+    CODE String,
+    STR String,
+    SRL Integer,
+    SUPPRESS String,
+    CVF Integer
+)
+STORED AS PARQUET
+LOCATION 's3://bucket/db_path/umls/MRCONSO'
+tblproperties ("parquet.compression"="SNAPPY");
+
+-- ###########################################################
+
+CREATE EXTERNAL TABLE IF NOT EXISTS `umls`.`umls__MRSTY` (
+    CUI String,
+    TUI String,
+    STN String,
+    STY String,
+    ATUI String,
+    CVF Integer
+)
+STORED AS PARQUET
+LOCATION 's3://bucket/db_path/umls/MRSTY'
+tblproperties ("parquet.compression"="SNAPPY");
+
+-- ###########################################################
+
+CREATE EXTERNAL TABLE IF NOT EXISTS `umls`.`umls__MRFILES` (
+    FIL String,
+    DES String,
+    FMT String,
+    CLS Integer,
+    RWS Integer,
+    BTS Integer
+)
+STORED AS PARQUET
+LOCATION 's3://bucket/db_path/umls/MRFILES'
+tblproperties ("parquet.compression"="SNAPPY");
+
+-- ###########################################################
+
+CREATE EXTERNAL TABLE IF NOT EXISTS `umls`.`umls__MRCOLS` (
+    COL String,
+    DES String,
+    REF String,
+    MIN Integer,
+    AV Float,
+    MAX Integer,
+    FIL String,
+    DTY String
+)
+STORED AS PARQUET
+LOCATION 's3://bucket/db_path/umls/MRCOLS'
+tblproperties ("parquet.compression"="SNAPPY");
+
+-- ###########################################################
+
+CREATE EXTERNAL TABLE IF NOT EXISTS `umls`.`umls__MRDOC` (
+    DOCKEY String,
+    VALUE String,
+    TYPE String,
+    EXPL String
+)
+STORED AS PARQUET
+LOCATION 's3://bucket/db_path/umls/MRDOC'
+tblproperties ("parquet.compression"="SNAPPY");
+
+-- ###########################################################
+
+CREATE EXTERNAL TABLE IF NOT EXISTS `umls`.`umls__MRREL` (
+    CUI1 String,
+    AUI1 String,
+    STYPE1 String,
+    REL String,
+    CUI2 String,
+    AUI2 String,
+    STYPE2 String,
+    RELA String,
+    RUI String,
+    SRUI String,
+    SAB String,
+    SL String,
+    RG String,
+    DIR String,
+    SUPPRESS String,
+    CVF Integer
+)
+STORED AS PARQUET
+LOCATION 's3://bucket/db_path/umls/MRREL'
+tblproperties ("parquet.compression"="SNAPPY");
+
+-- ###########################################################
+
+CREATE EXTERNAL TABLE IF NOT EXISTS `umls`.`umls__MRSAT` (
+    CUI String,
+    LUI String,
+    SUI String,
+    METAUI String,
+    STYPE String,
+    CODE String,
+    ATUI String,
+    SATUI String,
+    ATN String,
+    SAB String,
+    ATV String,
+    SUPPRESS String,
+    CVF Integer
+)
+STORED AS PARQUET
+LOCATION 's3://bucket/db_path/umls/MRSAT'
+tblproperties ("parquet.compression"="SNAPPY");
+
+-- ###########################################################
+
+CREATE EXTERNAL TABLE IF NOT EXISTS `umls`.`umls__MRRANK` (
+    RANK Integer,
+    SAB String,
+    TTY String,
+    SUPPRESS String
+)
+STORED AS PARQUET
+LOCATION 's3://bucket/db_path/umls/MRRANK'
+tblproperties ("parquet.compression"="SNAPPY");
+
+-- ###########################################################
+
+CREATE EXTERNAL TABLE IF NOT EXISTS `umls`.`umls__MRSAB` (
+    VCUI String,
+    RCUI String,
+    VSAB String,
+    RSAB String,
+    SON String,
+    SF String,
+    SVER String,
+    VSTART String,
+    VEND String,
+    IMETA String,
+    RMETA String,
+    SLC String,
+    SCC String,
+    SRL Integer,
+    TFR Integer,
+    CFR Integer,
+    CXTY String,
+    TTYL String,
+    ATNL String,
+    LAT String,
+    CENC String,
+    CURVER String,
+    SABIN String,
+    SSN String,
+    SCIT String
+)
+STORED AS PARQUET
+LOCATION 's3://bucket/db_path/umls/MRSAB'
+tblproperties ("parquet.compression"="SNAPPY");
+
+-- ###########################################################
+
+CREATE EXTERNAL TABLE IF NOT EXISTS `umls`.`umls__MRAUI` (
+    AUI1 String,
+    CUI1 String,
+    VER String,
+    REL String,
+    RELA String,
+    MAPREASON String,
+    AUI2 String,
+    CUI2 String,
+    MAPIN String
+)
+STORED AS PARQUET
+LOCATION 's3://bucket/db_path/umls/MRAUI'
+tblproperties ("parquet.compression"="SNAPPY");
+
+-- ###########################################################
+
+CREATE EXTERNAL TABLE IF NOT EXISTS `umls`.`umls__MRSMAP` (
+    MAPSETCUI String,
+    MAPSETSAB String,
+    MAPID String,
+    MAPSID String,
+    FROMEXPR String,
+    FROMTYPE String,
+    REL String,
+    RELA String,
+    TOEXPR String,
+    TOTYPE String,
+    CVF Integer
+)
+STORED AS PARQUET
+LOCATION 's3://bucket/db_path/umls/MRSMAP'
+tblproperties ("parquet.compression"="SNAPPY");
+
+-- ###########################################################
+
+CREATE EXTERNAL TABLE IF NOT EXISTS `umls`.`umls__AMBIGLUI` (
+    LUI String,
+    CUI String
+)
+STORED AS PARQUET
+LOCATION 's3://bucket/db_path/umls/AMBIGLUI'
+tblproperties ("parquet.compression"="SNAPPY");
+
+-- ###########################################################
+
+CREATE EXTERNAL TABLE IF NOT EXISTS `umls`.`umls__MRHIER` (
+    CUI String,
+    AUI String,
+    CXN Integer,
+    PAUI String,
+    SAB String,
+    RELA String,
+    PTR String,
+    HCD String,
+    CVF Integer
+)
+STORED AS PARQUET
+LOCATION 's3://bucket/db_path/umls/MRHIER'
+tblproperties ("parquet.compression"="SNAPPY");
+
+-- ###########################################################
+
+CREATE EXTERNAL TABLE IF NOT EXISTS `umls`.`umls__MRCUI` (
+    CUI1 String,
+    VER String,
+    REL String,
+    RELA String,
+    MAPREASON String,
+    CUI2 String,
+    MAPIN String
+)
+STORED AS PARQUET
+LOCATION 's3://bucket/db_path/umls/MRCUI'
+tblproperties ("parquet.compression"="SNAPPY");
+
+-- ###########################################################
+
+CREATE EXTERNAL TABLE IF NOT EXISTS `umls`.`umls__MRMAP` (
+    MAPSETCUI String,
+    MAPSETSAB String,
+    MAPSUBSETID String,
+    MAPRANK Integer,
+    MAPID String,
+    MAPSID String,
+    FROMID String,
+    FROMSID String,
+    FROMEXPR String,
+    FROMTYPE String,
+    FROMRULE String,
+    FROMRES String,
+    REL String,
+    RELA String,
+    TOID String,
+    TOSID String,
+    TOEXPR String,
+    TOTYPE String,
+    TORULE String,
+    TORES String,
+    MAPRULE String,
+    MAPRES String,
+    MAPTYPE String,
+    MAPATN String,
+    MAPATV String,
+    CVF Integer
+)
+STORED AS PARQUET
+LOCATION 's3://bucket/db_path/umls/MRMAP'
+tblproperties ("parquet.compression"="SNAPPY");
+
+-- ###########################################################
+
+CREATE EXTERNAL TABLE IF NOT EXISTS `umls`.`umls__MRDEF` (
+    CUI String,
+    AUI String,
+    ATUI String,
+    SATUI String,
+    SAB String,
+    DEF String,
+    SUPPRESS String,
+    CVF Integer
+)
+STORED AS PARQUET
+LOCATION 's3://bucket/db_path/umls/MRDEF'
+tblproperties ("parquet.compression"="SNAPPY");
+
+-- ###########################################################
+
+CREATE EXTERNAL TABLE IF NOT EXISTS `umls`.`umls__AMBIGSUI` (
+    SUI String,
+    CUI String
+)
+STORED AS PARQUET
+LOCATION 's3://bucket/db_path/umls/AMBIGSUI'
+tblproperties ("parquet.compression"="SNAPPY");
+
+-- ###########################################################
+
+CREATE TABLE umls__mrrel_is_a AS
+SELECT * FROM umls.mrrel
+WHERE (REL = 'CHD' 
+OR RELA IN ('isa','tradename_of','has_tradename','has_basis_of_strength_substance'))
+AND REL NOT IN ('RB', 'PAR')
+
+-- ###########################################################
+
+CREATE TABLE umls__mrconso_drugs AS
+SELECT * FROM umls.mrconso
+WHERE SAB IN ('ATC','CVX','DRUGBANK','GS','MED-RT','MMSL','MMX','MTHCMSFRF','MTHSPL',
+    'NDDF','RXNORM','SNOMEDCT_US','USP','VANDF')
diff --git a/cumulus_library_umls/static_builder.py b/cumulus_library_umls/static_builder.py
new file mode 100644
index 0000000..c0f2207
--- /dev/null
+++ b/cumulus_library_umls/static_builder.py
@@ -0,0 +1,160 @@
+"""Builder for UMLS files that generally do not change over time"""
+import dataclasses
+import pathlib
+
+import pandas
+from cumulus_library import base_table_builder, base_utils, study_manifest
+from cumulus_library.template_sql import base_templates
+
+
+@dataclasses.dataclass(kw_only=True)
+class StaticTableConfig:
+    """Convenience class for holding params for configuring tables from flat files"""
+
+    file_path: str
+    delimiter: str
+    table_name: str
+    headers: list[str]
+    dtypes: dict
+    parquet_types: list[str]
+    ignore_header: bool = False
+
+
+class StaticBuilder(base_table_builder.BaseTableBuilder):
+    base_path = pathlib.Path(__file__).resolve().parent
+    display_text = "Building static UMLS tables..."
+
+    def get_table_configs(self):
+        return [
+            # https://lhncbc.nlm.nih.gov/ii/tools/MetaMap/documentation/SemanticTypesAndGroups.html
+            StaticTableConfig(
+                file_path=self.base_path / "./static_files/SemanticTypes_2018AB.txt",
+                delimiter="|",
+                table_name="semantic_types",
+                headers=["abbrev", "TUI", "full_type_name"],
+                dtypes={
+                    "type_abbrev": "str",
+                    "TUI": "str",
+                    "full_type_name": "str",
+                },
+                parquet_types=["STRING", "STRING", "STRING"],
+            ),
+            StaticTableConfig(
+                file_path=self.base_path / "./static_files/SemGroups_2018.txt",
+                delimiter="|",
+                table_name="semantic_groups",
+                headers=["abbrev", "group_name", "TUI", "full_type_name"],
+                dtypes={
+                    "group_abbrev": "str",
+                    "group_name": "str",
+                    "TUI": "str",
+                    "full_type_name": "str",
+                },
+                parquet_types=["STRING", "STRING", "STRING", "STRING"],
+            ),
+            # https://www.nlm.nih.gov/research/umls/knowledge_sources/metathesaurus/release/abbreviations.html
+            StaticTableConfig(
+                file_path=self.base_path / "./static_files/umls_rel.tsv",
+                delimiter="\t",
+                table_name="rel_description",
+                headers=["REL", "REL_STR"],
+                dtypes={
+                    "REL": "str",
+                    "REL_STR": "str",
+                },
+                parquet_types=["STRING", "STRING"],
+                ignore_header=True,
+            ),
+            StaticTableConfig(
+                file_path=self.base_path / "./static_files/umls_rela.tsv",
+                delimiter="\t",
+                table_name="rela_description",
+                headers=["RELA", "RELA_STR"],
+                dtypes={
+                    "RELA": "str",
+                    "RELA_STR": "str",
+                },
+                parquet_types=["STRING", "STRING"],
+                ignore_header=True,
+            ),
+            StaticTableConfig(
+                file_path=self.base_path / "./static_files/umls_tty.tsv",
+                delimiter="\t",
+                table_name="tty_description",
+                headers=["TTY", "TTY_STR"],
+                dtypes={
+                    "TTY": "str",
+                    "TTY_STR": "str",
+                },
+                parquet_types=["STRING", "STRING"],
+                ignore_header=True,
+            ),
+            StaticTableConfig(
+                file_path=self.base_path / "./static_files/umls_tui.tsv",
+                delimiter="\t",
+                table_name="tui_description",
+                headers=["STY", "TUI", "TUI_STR"],
+                dtypes={
+                    "STY": "str",
+                    "TUI": "str",
+                    "TUI_STR": "str",
+                },
+                parquet_types=["STRING", "STRING", "STRING"],
+                ignore_header=True,
+            ),
+        ]
+
+    def prepare_queries(
+        self,
+        config: base_utils.StudyConfig,
+        manifest: study_manifest.StudyManifest,
+        *args,
+        **kwargs,
+    ):
+        # fetch and add vsac tables
+        self.tables = self.get_table_configs()
+        with base_utils.get_progress_bar() as progress:
+            task = progress.add_task(
+                "Uploading UMLS dictionary files...", total=len(self.tables)
+            )
+
+            for table in self.tables:
+                # Determine what we're using as a source file
+                path = self.base_path / table.file_path
+                parquet_path = (
+                    table.file_path.parent
+                    / table.file_path.stem
+                    / f"{table.file_path.stem}.parquet"
+                )
+                parquet_path.parent.mkdir(parents=True, exist_ok=True)
+                # Read the file, using lots of the TableConfig params, and generate
+                # a parquet file
+                df = pandas.read_csv(
+                    path,
+                    delimiter=table.delimiter,
+                    names=table.headers,
+                    header=0 if table.ignore_header else None,
+                    dtype=table.dtypes,
+                    index_col=False,
+                    na_values=["\\N"],
+                )
+                df.to_parquet(parquet_path)
+                # Upload to S3 and create a table that reads from it
+                prefix = manifest.get_study_prefix()
+                remote_path = config.db.upload_file(
+                    file=parquet_path,
+                    study=prefix,
+                    topic=parquet_path.stem,
+                    force_upload=config.force_upload,
+                )
+                self.queries.append(
+                    base_templates.get_ctas_from_parquet_query(
+                        schema_name=config.schema,
+                        table_name=f"{prefix}__{table.table_name}",
+                        local_location=parquet_path.parent,
+                        remote_location=remote_path,
+                        table_cols=table.headers,
+                        remote_table_cols_types=table.parquet_types,
+                    )
+                )
+                progress.advance(task)
diff --git a/cumulus_library_umls/static_files/.DS_Store b/cumulus_library_umls/static_files/.DS_Store
new file mode 100644
index 0000000000000000000000000000000000000000..5008ddfcf53c02e82d7eee2e57c38e5672ef89f6
GIT binary patch
literal 6148
zcmeH~Jr2S!425mzP>H1@V-^m;4Wg<&0T*E43hX&L&p$$qDprKhvt+--jT7}7np#A3
zem<@ulZcFPQ@L2!n>{z**<q8>++&mCkOWA81W14cNZ<zv;LbK1Poaz?KmsK2CSc!(
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literal 0
HcmV?d00001

diff --git a/cumulus_library_umls/static_files/SemGroups_2018.txt b/cumulus_library_umls/static_files/SemGroups_2018.txt
new file mode 100644
index 0000000..bfb61e6
--- /dev/null
+++ b/cumulus_library_umls/static_files/SemGroups_2018.txt
@@ -0,0 +1,127 @@
+ACTI|Activities & Behaviors|T052|Activity
+ACTI|Activities & Behaviors|T053|Behavior
+ACTI|Activities & Behaviors|T056|Daily or Recreational Activity
+ACTI|Activities & Behaviors|T051|Event
+ACTI|Activities & Behaviors|T064|Governmental or Regulatory Activity
+ACTI|Activities & Behaviors|T055|Individual Behavior
+ACTI|Activities & Behaviors|T066|Machine Activity
+ACTI|Activities & Behaviors|T057|Occupational Activity
+ACTI|Activities & Behaviors|T054|Social Behavior
+ANAT|Anatomy|T017|Anatomical Structure
+ANAT|Anatomy|T029|Body Location or Region
+ANAT|Anatomy|T023|Body Part, Organ, or Organ Component
+ANAT|Anatomy|T030|Body Space or Junction
+ANAT|Anatomy|T031|Body Substance
+ANAT|Anatomy|T022|Body System
+ANAT|Anatomy|T025|Cell
+ANAT|Anatomy|T026|Cell Component
+ANAT|Anatomy|T018|Embryonic Structure
+ANAT|Anatomy|T021|Fully Formed Anatomical Structure
+ANAT|Anatomy|T024|Tissue
+CHEM|Chemicals & Drugs|T116|Amino Acid, Peptide, or Protein
+CHEM|Chemicals & Drugs|T195|Antibiotic
+CHEM|Chemicals & Drugs|T123|Biologically Active Substance
+CHEM|Chemicals & Drugs|T122|Biomedical or Dental Material
+CHEM|Chemicals & Drugs|T103|Chemical
+CHEM|Chemicals & Drugs|T120|Chemical Viewed Functionally
+CHEM|Chemicals & Drugs|T104|Chemical Viewed Structurally
+CHEM|Chemicals & Drugs|T200|Clinical Drug
+CHEM|Chemicals & Drugs|T196|Element, Ion, or Isotope
+CHEM|Chemicals & Drugs|T126|Enzyme
+CHEM|Chemicals & Drugs|T131|Hazardous or Poisonous Substance
+CHEM|Chemicals & Drugs|T125|Hormone
+CHEM|Chemicals & Drugs|T129|Immunologic Factor
+CHEM|Chemicals & Drugs|T130|Indicator, Reagent, or Diagnostic Aid
+CHEM|Chemicals & Drugs|T197|Inorganic Chemical
+CHEM|Chemicals & Drugs|T114|Nucleic Acid, Nucleoside, or Nucleotide
+CHEM|Chemicals & Drugs|T109|Organic Chemical
+CHEM|Chemicals & Drugs|T121|Pharmacologic Substance
+CHEM|Chemicals & Drugs|T192|Receptor
+CHEM|Chemicals & Drugs|T127|Vitamin
+CONC|Concepts & Ideas|T185|Classification
+CONC|Concepts & Ideas|T077|Conceptual Entity
+CONC|Concepts & Ideas|T169|Functional Concept
+CONC|Concepts & Ideas|T102|Group Attribute
+CONC|Concepts & Ideas|T078|Idea or Concept
+CONC|Concepts & Ideas|T170|Intellectual Product
+CONC|Concepts & Ideas|T171|Language
+CONC|Concepts & Ideas|T080|Qualitative Concept
+CONC|Concepts & Ideas|T081|Quantitative Concept
+CONC|Concepts & Ideas|T089|Regulation or Law
+CONC|Concepts & Ideas|T082|Spatial Concept
+CONC|Concepts & Ideas|T079|Temporal Concept
+DEVI|Devices|T203|Drug Delivery Device
+DEVI|Devices|T074|Medical Device
+DEVI|Devices|T075|Research Device
+DISO|Disorders|T020|Acquired Abnormality
+DISO|Disorders|T190|Anatomical Abnormality
+DISO|Disorders|T049|Cell or Molecular Dysfunction
+DISO|Disorders|T019|Congenital Abnormality
+DISO|Disorders|T047|Disease or Syndrome
+DISO|Disorders|T050|Experimental Model of Disease
+DISO|Disorders|T033|Finding
+DISO|Disorders|T037|Injury or Poisoning
+DISO|Disorders|T048|Mental or Behavioral Dysfunction
+DISO|Disorders|T191|Neoplastic Process
+DISO|Disorders|T046|Pathologic Function
+DISO|Disorders|T184|Sign or Symptom
+GENE|Genes & Molecular Sequences|T087|Amino Acid Sequence
+GENE|Genes & Molecular Sequences|T088|Carbohydrate Sequence
+GENE|Genes & Molecular Sequences|T028|Gene or Genome
+GENE|Genes & Molecular Sequences|T085|Molecular Sequence
+GENE|Genes & Molecular Sequences|T086|Nucleotide Sequence
+GEOG|Geographic Areas|T083|Geographic Area
+LIVB|Living Beings|T100|Age Group
+LIVB|Living Beings|T011|Amphibian
+LIVB|Living Beings|T008|Animal
+LIVB|Living Beings|T194|Archaeon
+LIVB|Living Beings|T007|Bacterium
+LIVB|Living Beings|T012|Bird
+LIVB|Living Beings|T204|Eukaryote
+LIVB|Living Beings|T099|Family Group
+LIVB|Living Beings|T013|Fish
+LIVB|Living Beings|T004|Fungus
+LIVB|Living Beings|T096|Group
+LIVB|Living Beings|T016|Human
+LIVB|Living Beings|T015|Mammal
+LIVB|Living Beings|T001|Organism
+LIVB|Living Beings|T101|Patient or Disabled Group
+LIVB|Living Beings|T002|Plant
+LIVB|Living Beings|T098|Population Group
+LIVB|Living Beings|T097|Professional or Occupational Group
+LIVB|Living Beings|T014|Reptile
+LIVB|Living Beings|T010|Vertebrate
+LIVB|Living Beings|T005|Virus
+OBJC|Objects|T071|Entity
+OBJC|Objects|T168|Food
+OBJC|Objects|T073|Manufactured Object
+OBJC|Objects|T072|Physical Object
+OBJC|Objects|T167|Substance
+OCCU|Occupations|T091|Biomedical Occupation or Discipline
+OCCU|Occupations|T090|Occupation or Discipline
+ORGA|Organizations|T093|Health Care Related Organization
+ORGA|Organizations|T092|Organization
+ORGA|Organizations|T094|Professional Society
+ORGA|Organizations|T095|Self-help or Relief Organization
+PHEN|Phenomena|T038|Biologic Function
+PHEN|Phenomena|T069|Environmental Effect of Humans
+PHEN|Phenomena|T068|Human-caused Phenomenon or Process
+PHEN|Phenomena|T034|Laboratory or Test Result
+PHEN|Phenomena|T070|Natural Phenomenon or Process
+PHEN|Phenomena|T067|Phenomenon or Process
+PHYS|Physiology|T043|Cell Function
+PHYS|Physiology|T201|Clinical Attribute
+PHYS|Physiology|T045|Genetic Function
+PHYS|Physiology|T041|Mental Process
+PHYS|Physiology|T044|Molecular Function
+PHYS|Physiology|T032|Organism Attribute
+PHYS|Physiology|T040|Organism Function
+PHYS|Physiology|T042|Organ or Tissue Function
+PHYS|Physiology|T039|Physiologic Function
+PROC|Procedures|T060|Diagnostic Procedure
+PROC|Procedures|T065|Educational Activity
+PROC|Procedures|T058|Health Care Activity
+PROC|Procedures|T059|Laboratory Procedure
+PROC|Procedures|T063|Molecular Biology Research Technique
+PROC|Procedures|T062|Research Activity
+PROC|Procedures|T061|Therapeutic or Preventive Procedure
diff --git a/cumulus_library_umls/static_files/SemanticTypes_2018AB.txt b/cumulus_library_umls/static_files/SemanticTypes_2018AB.txt
new file mode 100644
index 0000000..d5d309e
--- /dev/null
+++ b/cumulus_library_umls/static_files/SemanticTypes_2018AB.txt
@@ -0,0 +1,127 @@
+aapp|T116|Amino Acid, Peptide, or Protein
+acab|T020|Acquired Abnormality
+acty|T052|Activity
+aggp|T100|Age Group
+amas|T087|Amino Acid Sequence
+amph|T011|Amphibian
+anab|T190|Anatomical Abnormality
+anim|T008|Animal
+anst|T017|Anatomical Structure
+antb|T195|Antibiotic
+arch|T194|Archaeon
+bacs|T123|Biologically Active Substance
+bact|T007|Bacterium
+bdsu|T031|Body Substance
+bdsy|T022|Body System
+bhvr|T053|Behavior
+biof|T038|Biologic Function
+bird|T012|Bird
+blor|T029|Body Location or Region
+bmod|T091|Biomedical Occupation or Discipline
+bodm|T122|Biomedical or Dental Material
+bpoc|T023|Body Part, Organ, or Organ Component
+bsoj|T030|Body Space or Junction
+celc|T026|Cell Component
+celf|T043|Cell Function
+cell|T025|Cell
+cgab|T019|Congenital Abnormality
+chem|T103|Chemical
+chvf|T120|Chemical Viewed Functionally
+chvs|T104|Chemical Viewed Structurally
+clas|T185|Classification
+clna|T201|Clinical Attribute
+clnd|T200|Clinical Drug
+cnce|T077|Conceptual Entity
+comd|T049|Cell or Molecular Dysfunction
+crbs|T088|Carbohydrate Sequence
+diap|T060|Diagnostic Procedure
+dora|T056|Daily or Recreational Activity
+drdd|T203|Drug Delivery Device
+dsyn|T047|Disease or Syndrome
+edac|T065|Educational Activity
+eehu|T069|Environmental Effect of Humans
+elii|T196|Element, Ion, or Isotope
+emod|T050|Experimental Model of Disease
+emst|T018|Embryonic Structure
+enty|T071|Entity
+enzy|T126|Enzyme
+euka|T204|Eukaryote
+evnt|T051|Event
+famg|T099|Family Group
+ffas|T021|Fully Formed Anatomical Structure
+fish|T013|Fish
+fndg|T033|Finding
+fngs|T004|Fungus
+food|T168|Food
+ftcn|T169|Functional Concept
+genf|T045|Genetic Function
+geoa|T083|Geographic Area
+gngm|T028|Gene or Genome
+gora|T064|Governmental or Regulatory Activity
+grpa|T102|Group Attribute
+grup|T096|Group
+hcpp|T068|Human-caused Phenomenon or Process
+hcro|T093|Health Care Related Organization
+hlca|T058|Health Care Activity
+hops|T131|Hazardous or Poisonous Substance
+horm|T125|Hormone
+humn|T016|Human
+idcn|T078|Idea or Concept
+imft|T129|Immunologic Factor
+inbe|T055|Individual Behavior
+inch|T197|Inorganic Chemical
+inpo|T037|Injury or Poisoning
+inpr|T170|Intellectual Product
+irda|T130|Indicator, Reagent, or Diagnostic Aid
+lang|T171|Language
+lbpr|T059|Laboratory Procedure
+lbtr|T034|Laboratory or Test Result
+mamm|T015|Mammal
+mbrt|T063|Molecular Biology Research Technique
+mcha|T066|Machine Activity
+medd|T074|Medical Device
+menp|T041|Mental Process
+mnob|T073|Manufactured Object
+mobd|T048|Mental or Behavioral Dysfunction
+moft|T044|Molecular Function
+mosq|T085|Molecular Sequence
+neop|T191|Neoplastic Process
+nnon|T114|Nucleic Acid, Nucleoside, or Nucleotide
+npop|T070|Natural Phenomenon or Process
+nusq|T086|Nucleotide Sequence
+ocac|T057|Occupational Activity
+ocdi|T090|Occupation or Discipline
+orch|T109|Organic Chemical
+orga|T032|Organism Attribute
+orgf|T040|Organism Function
+orgm|T001|Organism
+orgt|T092|Organization
+ortf|T042|Organ or Tissue Function
+patf|T046|Pathologic Function
+phob|T072|Physical Object
+phpr|T067|Phenomenon or Process
+phsf|T039|Physiologic Function
+phsu|T121|Pharmacologic Substance
+plnt|T002|Plant
+podg|T101|Patient or Disabled Group
+popg|T098|Population Group
+prog|T097|Professional or Occupational Group
+pros|T094|Professional Society
+qlco|T080|Qualitative Concept
+qnco|T081|Quantitative Concept
+rcpt|T192|Receptor
+rept|T014|Reptile
+resa|T062|Research Activity
+resd|T075|Research Device
+rnlw|T089|Regulation or Law
+sbst|T167|Substance
+shro|T095|Self-help or Relief Organization
+socb|T054|Social Behavior
+sosy|T184|Sign or Symptom
+spco|T082|Spatial Concept
+tisu|T024|Tissue
+tmco|T079|Temporal Concept
+topp|T061|Therapeutic or Preventive Procedure
+virs|T005|Virus
+vita|T127|Vitamin
+vtbt|T010|Vertebrate
diff --git a/cumulus_library_umls/static_files/umls_rel.tsv b/cumulus_library_umls/static_files/umls_rel.tsv
new file mode 100644
index 0000000..de81f12
--- /dev/null
+++ b/cumulus_library_umls/static_files/umls_rel.tsv
@@ -0,0 +1,14 @@
+#REL (Relationship)	REL Description
+AQ	Allowed qualifier
+CHD	has child relationship in a UMLS Metathesaurus
+DEL	Deleted concept
+PAR	has parent relationship in a UMLS Metathesaurus
+QB	can be qualified by.
+RB	has a broader relationship
+RL	similar or alike or synonymous or self-referential CUI1 = CUI2
+RN	has a narrower relationship
+RO	has relationship other than synonymous, narrower, or broader
+RQ	related and possibly synonymous
+RU	Related, unspecified
+SY	source asserted synonymy.
+XR	Not related, no mapping
diff --git a/cumulus_library_umls/static_files/umls_rela.tsv b/cumulus_library_umls/static_files/umls_rela.tsv
new file mode 100644
index 0000000..e38de61
--- /dev/null
+++ b/cumulus_library_umls/static_files/umls_rela.tsv
@@ -0,0 +1,1024 @@
+#RELA  (Relationship Attribute)	RELA Description
+abnormal_cell_affected_by_chemical_or_drug	abnormal cell affected by chemical or drug
+abnormality_associated_with_allele	abnormality associated with allele
+absorbability_of	Absorbability of
+access_device_used_by	Access device used by
+access_instrument_of	Access instrument of
+access_of	Access of
+acted_on_by_process	Acted on by process
+active_ingredient_of	Active ingredient of
+active_metabolites_of	Active metabolites of
+active_moiety_of	Active Moiety of
+activity_of_allele	activity of allele
+actual_outcome_of	Actual outcome of
+add_on_code_for	Add on code for (Report with)
+adheres_to	Adheres to
+adjacent_to	Adjacent to
+adjectival_form_of	Adjectival form of
+adjustment_of	Adjustment of
+afferent_to	Afferent to
+after	After
+alias_of	Alias_of
+allele_absent_from_wild-type_chromosomal_location	allele absent from wild-type chromosomal location
+allele_has_abnormality	allele has abnormality
+allele_has_activity	allele has activity
+allele_in_chromosomal_location	allele in chromosomal location
+allele_plays_altered_role_in_process	allele plays altered role in process
+allele_plays_role_in_metabolism_of_chemical_or_drug	allele plays role in metabolism of chemical or drug
+allelic_variant_of	Allelic Variant of
+alternative_of	Alternative of
+analyzed_by	Analyzed by
+analyzes	Analyzes
+anatomic_structure_has_location	anatomic structure has location
+anatomic_structure_is_physical_part_of	anatomic structure is physical part of
+anatomical_entity_observed_in	anatomical entity observed in
+anatomy_originated_from_biological_process	anatomy originated from biological process
+answer_to_is_sterile	Answer to is sterile
+answer_to	answer to
+anterior_to	anterior to
+anteroinferior_to	anteroinferior to
+anterolateral_to	anterolateral to
+anteromedial_to	anteromedial to
+anterosuperior_to	anterosuperior to
+approach_of_excluded	Approach of excluded
+approach_of_possibly_included	Approach of possibly included
+approach_of	Approach of
+archetype_of	Archetype of
+arterial_supply_of	Arterial supply of
+articulates_with	Articulates with
+associated_condition_of	Associated condition of
+associated_disease	Associated disease
+associated_etiologic_finding_of	Associated etiologic finding of
+associated_finding_of_excluded	Associated finding of excluded
+associated_finding_of_possibly_included	Associated finding of possibly included
+associated_finding_of	Associated finding of
+associated_function_of	Associated function of
+associated_genetic_condition	Associated genetic condition
+associated_morphology_of	Associated morphology of
+associated_observation_of	Associated observation of
+associated_procedure_of_excluded	Associated procedure of excluded
+associated_procedure_of_possibly_included	Associated procedure of possibly included
+associated_procedure_of	Associated procedure of
+associated_with_malfunction_of_gene_product	associated with malfunction of gene product
+associated_with	Associated with
+attaches_to	Attaches to
+away_from	Away from
+basic_dose_form_of	Basic dose form of
+basis_of_strength_substance_of	Basis of strength substance of
+before	Before
+biological_process_has_associated_location	biological process has associated location
+biological_process_has_initiator_chemical_or_drug	biological process has initiator chemical or drug
+biological_process_has_initiator_process	biological process has initiator process
+biological_process_has_result_anatomy	biological process has result anatomy
+biological_process_has_result_biological_process	biological process has result biological process
+biological_process_has_result_chemical_or_drug	biological process has result chemical or drug
+biological_process_involves_chemical_or_drug	biological process involves chemical or drug
+biological_process_involves_gene_product	biological process involves gene product
+biological_process_is_part_of_process	biological process is part of process
+biological_process_results_from_biological_process	biological process results from biological process
+biomarker_type_includes_gene_product	biomarker type includes gene product
+biomarker_type_includes_gene	biomarker type includes gene
+boss_of	Basis of strength substance of
+bounded_by	Bounded by
+bounds	Bounds
+branch_of	Branch of
+british_form_of	British form of
+causative_agent_of	Causative agent of
+cause_of	Cause of
+cell_type_is_associated_with_eo_disease	cell type is associated with eo disease
+cell_type_or_tissue_affected_by_chemical_or_drug	cell type or tissue affected by chemical or drug
+challenge_of	Challenge of
+characterized_by	Characterized by
+characterizes	Characterizes
+chemical_or_drug_affects_abnormal_cell	chemical or drug affects abnormal cell
+chemical_or_drug_affects_cell_type_or_tissue	chemical or drug affects cell type or tissue
+chemical_or_drug_affects_gene_product	chemical or drug affects gene product
+chemical_or_drug_has_mechanism_of_action	chemical or drug has mechanism of action
+chemical_or_drug_has_physiologic_effect	chemical or drug has physiologic effect
+chemical_or_drug_initiates_biological_process	chemical or drug initiates biological process
+chemical_or_drug_is_metabolized_by_enzyme	chemical or drug is metabolized by enzyme
+chemical_or_drug_is_product_of_biological_process	chemical or drug is product of biological process
+chemical_or_drug_metabolism_is_associated_with_allele	chemical or drug metabolism is associated with allele
+chemical_or_drug_plays_role_in_biological_process	chemical or drug plays role in biological process
+chemotherapy_regimen_has_component	chemotherapy regimen has component
+chromosomal_location_of_allele	chromosomal location of allele
+chromosomal_location_of_wild-type_gene	chromosomal location of wild-type gene
+chromosome_involved_in_cytogenetic_abnormality	chromosome involved in cytogenetic abnormality
+chromosome_mapped_to_disease	chromosome mapped to disease
+class_code_classified_by	Class code classified by
+class_of	Class of
+classified_as	Classified as
+classifies_class_code	Classifies class code
+classifies	Classifies
+clinical_course_of	Clinical course of
+clinically_associated_with	Clinically associated with
+clinically_similar	Clinically similar
+clinician_form_of	Clinician form of
+co-occurs_with	Co-ocurrs with
+coating_material_of	Coating material of
+common_name_of	common name of
+completely_excised_anatomy_has_procedure	completely excised anatomy has procedure
+completely_excised_anatomy_may_have_procedure	Completely excised anatomy may have procedure
+complex_has_physical_part	complex has physical part
+component_of_excluded	Component of excluded
+component_of_possibly_included	Component of possibly included
+component_of	Component of
+compositional_material_of	Compositional material of
+concentration_strength_denominator_unit_of	Concentration strength denominator unit of
+concentration_strength_denominator_value_of	Concentration strength denominator value of
+concentration_strength_numerator_unit_of	Concentration strength numerator unit of
+concentration_strength_numerator_value_of	Concentration strength numerator value of
+concept_in_subset	concept in subset
+conceptual_part_of	Conceptual part of
+connected_to	connected to
+connection_type_of	connection type of
+consider_from	Consider from
+consider	Consider
+consists_of	Consists of
+constitutes	Constitutes
+constitutional_part_of	Constitutional part of
+consumer_friendly_form_of	Consumer friendly form of
+contained_in	Contained in
+contains	Contains
+context_binding_of	Context binding of
+continuation_branch_of	Continuation branch of
+continuous_distally_with	continuous distally with
+continuous_proximally_with	continuous proximally with
+continuous_with	Continuous with
+contraindicated_class_of	Contraindicated class of
+contraindicated_mechanism_of_action_of	Contraindicated mechanism of action of
+contraindicated_physiologic_effect_of	Contraindicated physiologic effect of
+contraindicated_with_disease	Contraindicated with disease
+corresponds_to	corresponds to
+count_of_active_ingredient_of	Count of active ingredient of
+count_of_base_of_active_ingredient_of	Count of base of active ingredient of
+count_of	count_of
+course_of	Course of
+ctcae_5_parent_of	ctcae_5 parent of
+cytogenetic_abnormality_involves_chromosome	cytogenetic abnormality involves chromosome
+data_element_of	data element of
+ddx	dxx
+default_inpatient_classification_of	Default inpatient classification of
+default_mapped_from	Default mapped from
+default_mapped_to	Default mapped to
+default_outpatient_classification_of	Default outpatient classification of
+defining_characteristic_of	Defining characteristic of
+definitional_manifestation_of	Definitional manifestation of
+degree_of	Degree of
+dependent_of	Dependent of
+derives_from	derives from
+derives	derives
+development_type_of	development type of
+developmental_stage_of	developmental stage of
+develops_from	Develops from
+develops_into	develops into
+device_characteristic_of	Device characteristic of
+device_intended_site_of	Device intended site of
+device_used_by	Device used by
+diagnosed_by	Diagnosed by
+diagnoses	Diagnoses
+diagnostic_criteria_of	DSM-5 diagnostic criteria for ICD code
+direct_cell_shape_of	direct cell shape of
+direct_device_of	Direct device of
+direct_left_of	direct left of
+direct_morphology_of	Direct morphology of
+direct_procedure_site_of	Direct procedure site of
+direct_right_of	direct right of
+direct_site_of	Direct site of
+direct_substance_of	Direct substance of
+disease_excludes_abnormal_cell	disease excludes abnormal cell
+disease_excludes_cytogenetic_abnormality	disease excludes cytogenetic abnormality
+disease_excludes_finding	disease excludes finding
+disease_excludes_metastatic_anatomic_site	disease excludes metastatic anatomic site
+disease_excludes_molecular_abnormality	disease excludes molecular abnormality
+disease_excludes_normal_cell_origin	disease excludes normal cell origin
+disease_excludes_normal_tissue_origin	disease excludes normal tissue origin
+disease_excludes_primary_anatomic_site	disease excludes primary anatomic site
+disease_has_abnormal_cell	disease has abnormal cell
+disease_has_accepted_treatment_with_regimen	Disease Has Accepted Treatment With Regimen
+disease_has_associated_anatomic_site	disease has associated anatomic site
+disease_has_associated_disease	disease has associated disease
+disease_has_associated_gene	disease has associated gene
+disease_has_cytogenetic_abnormality	disease has cytogenetic abnormality
+disease_has_finding	disease has finding
+disease_has_metastatic_anatomic_site	disease has metastatic anatomic site
+disease_has_molecular_abnormality	disease has molecular abnormality
+disease_has_normal_cell_origin	disease has normal cell origin
+disease_has_normal_tissue_origin	disease has normal tissue origin
+disease_has_primary_anatomic_site	disease has primary anatomic site
+disease_is_grade	disease is grade
+disease_is_marked_by_gene	disease is marked by gene
+disease_is_stage	disease is stage
+disease_mapped_to_chromosome	disease mapped to chromosome
+disease_mapped_to_gene	Disease mapped to gene
+disease_may_have_abnormal_cell	disease may have abnormal cell
+disease_may_have_associated_disease	disease may have associated disease
+disease_may_have_cytogenetic_abnormality	disease may have cytogenetic abnormality
+disease_may_have_finding	disease may have finding
+disease_may_have_molecular_abnormality	disease may have molecular abnormality
+disease_may_have_normal_cell_origin	disease may have normal cell origin
+disease_may_have_normal_tissue_origin	disease may have normal tissue origin
+disposition_of	Disposition of
+distal_to	distal to
+divisor_of	Divisor of
+do_not_code_with	Do not code with (excludes)
+dose_form_administration_method_of	Dose form administration method of
+dose_form_intended_site_of	Dose form intended site of
+dose_form_of	Dose form of
+dose_form_release_characteristic_of	Dose form release characteristic of
+dose_form_transformation_of	Dose form transformation of
+doseformgroup_of	Dose form group of
+drains_into	drains into
+due_to	Due to
+during	During
+effect_may_be_inhibited_by	Effect may be inhibited by
+efferent_to	Efferent to
+endogenous_product_related_to	Endogenous Product Related To
+ends_during	Ends during
+energy_used_by	Energy used by
+entire_anatomy_structure_of	Entire anatomy structure of
+entry_combination_of	Entry Combination of
+entry_term_of	Entry term of
+entry_version_of	Entry version of
+enzyme_metabolizes_chemical_or_drug	enzyme metabolizes chemical or drug
+eo_anatomy_is_associated_with_eo_disease	eo anatomy is associated with eo disease
+eo_disease_has_associated_cell_type	eo disease has associated cell type
+eo_disease_has_associated_eo_anatomy	eo disease has associated eo anatomy
+eo_disease_has_property_or_attribute	eo disease has property or attribute
+eo_disease_maps_to_human_disease	eo disease maps to human disease
+episodicity_of	Episodicity of
+evaluation_of	Evaluation of
+excised_anatomy_has_procedure	excised anatomy has procedure
+excised_anatomy_may_have_procedure	excised anatomy may have procedure
+exhibited_by	Exhibited by
+exhibits	Exhibits
+expanded_form_of	Expanded form of
+expected_outcome_of	Expected outcome of
+extended_to_by_process	Extended to by process
+extent_of	Extent of
+external_to	external to
+filling_of	Filling of
+finding_context_of	Finding context of
+finding_informer_of	Finding informer of
+finding_method_of	Finding method of
+finding_site_of	Finding site of
+focus_of	Focus of
+form_of	Form of
+formed_by	formed by
+forms	forms
+full_grown_phenotype_of	full grown phenotype of
+fuses_with	fuses with
+fusion_of	fusion of
+gene_associated_with_disease	gene associated with disease
+gene_encodes_gene_product	gene encodes gene product
+gene_found_in_organism	gene found in organism
+gene_has_abnormality	gene has abnormality
+gene_has_physical_location	gene has physical location
+gene_in_chromosomal_location	gene in chromosomal location
+gene_involved_in_molecular_abnormality	gene involved in molecular abnormality
+gene_involved_in_pathogenesis_of_disease	gene involved in pathogenesis of disease
+gene_is_biomarker_of	gene is biomarker of
+gene_is_biomarker_type	gene is biomarker type
+gene_is_element_in_pathway	gene is element in pathway
+gene_mapped_to_disease	gene mapped to disease
+gene_mutant_encodes_gene_product_sequence_variation	gene mutant encodes gene product sequence variation
+gene_plays_role_in_process	gene plays role in process
+gene_product_affected_by_chemical_or_drug	gene product affected by chemical or drug
+gene_product_encoded_by_gene	gene product encoded by gene
+gene_product_expressed_in_tissue	gene product expressed in tissue
+gene_product_has_abnormality	gene product has abnormality
+gene_product_has_associated_anatomy	gene product has associated anatomy
+gene_product_has_biochemical_function	gene product has biochemical function
+gene_product_has_chemical_classification	gene product has chemical classification
+gene_product_has_gene_product_variant	gene product has gene product variant
+gene_product_has_organism_source	gene product has organism source
+gene_product_has_structural_domain_or_motif	gene product has structural domain or motif
+gene_product_is_biomarker_of	gene product is biomarker of
+gene_product_is_biomarker_type	gene product is biomarker type
+gene_product_is_element_in_pathway	gene product is element in pathway
+gene_product_is_physical_part_of	gene product is physical part of
+gene_product_malfunction_associated_with_disease	gene product malfunction associated with disease
+gene_product_plays_role_in_biological_process	gene product plays role in biological process
+gene_product_sequence_variation_encoded_by_gene_mutant	gene product sequence variation encoded by gene mutant
+gene_product_variant_of_gene_product	gene product variant of gene product
+genetic_biomarker_related_to	genetic biomarker related to
+germ_origin_of	Germ origin of
+grade_of	grade of
+happens_during	Happens during
+has_absorbability	Has absorbability
+has_acc-aha_sars2_authorized_value	has ACC-AHA SARS2 authorized value
+has_access_instrument	Has access instrument
+has_access	Has access
+has_action_guidance	Has action guidance
+has_active_ingredient	Has active ingredient
+has_active_metabolites	Has active metabolites
+has_active_moiety	Has Active Moiety
+has_actual_outcome	Has actual outcome
+has_add_on_code	Has add on code (Report with)
+has_adherent	Has adherent
+has_adjustment	Has adjustment
+has_aggregation_view	Has aggregation view
+has_alias	Has alias
+has_allelic_variant	Has allelic variant
+has_alternative	Has alternative
+has_answer	has answer
+has_approach_guidance	Has approach guidance
+has_approach	Has approach
+has_archetype	Has archetype
+has_arterial_supply	Has arterial supply
+has_associated_condition	has_associated_condition
+has_associated_etiologic_finding	Has associated etiologic finding
+has_associated_finding	Has associated finding
+has_associated_function	Has associated function
+has_associated_morphology	Has associated morphology
+has_associated_observation	Has associated observation
+has_associated_procedure	Has associated procedure
+has_at_risk_population	Has at risk population
+has_basic_dose_form	Has basic dose form
+has_basis_of_strength_substance	Has basis of strength substance
+has_boss	Has basis of strength substance
+has_branch	Has branch
+has_british_form	Has British form
+has_causative_agent	Has causative agent
+has_challenge	Has challenge
+has_class	Has class
+has_clinical_course	Has clinical course
+has_clinician_form	Has clinician form
+has_coating_material	Has coating material
+has_common_name	Has common name
+has_communication_with_wound	Has communication with wound
+has_component	Has component
+has_compositional_material	Has compositional material
+has_concentration_strength_denominator_unit	Has concentration strength denominator unit
+has_concentration_strength_denominator_value	Has concentration strength denominator value
+has_concentration_strength_numerator_unit	Has concentration strength numerator unit
+has_concentration_strength_numerator_value	Has concentration strength numerator value
+has_conceptual_part	Has conceptual part
+has_connection_type	has connection type
+has_constitutional_part	Has constitutional part
+has_consumer_friendly_form	Has consumer friendly form
+has_context_binding	Has context binding
+has_continuation_branch	Has continuation branch
+has_contraindicated_class	Has contraindicated class
+has_contraindicated_drug	Has contraindicated drug
+has_contraindicated_mechanism_of_action	Has contraindicated mechanism of action
+has_contraindicated_physiologic_effect	Has contraindicated physiologic effect
+has_count_of_active_ingredient	Has count of active ingredient
+has_count_of_base_of_active_ingredient	Has count of base of active ingredient
+has_count	Has count
+has_course	Has course
+has_ctcae_5_parent	has ctcae_5 parent
+has_ctdc_value	has ctdc value
+has_data_element	has data element
+has_default_inpatient_classification	Has default inpatient classification
+has_default_outpatient_classification	Has default outpatient classification
+has_defining_characteristic	Has defining characteristic
+has_definitional_manifestation	Has definitional manifestation
+has_degree	Has degree
+has_dependent	Has dependent
+has_development_type	has development type
+has_developmental_stage	has developmental stage
+has_device_characteristic	Has device characteristic
+has_device_intended_site	Has device intended site
+has_diagnostic_criteria	ICD has DSM-5 diagnostic criteria
+has_dipg_dmg_authorized_value	has DIPG DMG authorized value
+has_direct_cell_shape	has direct cell shape
+has_direct_device	Has direct device
+has_direct_morphology	Has direct morphology
+has_direct_procedure_site	Has direct procedure site
+has_direct_site	Has direct site
+has_direct_substance	Has direct substance
+has_disposition	Has disposition
+has_divisor	Has divisor
+has_dose_form_administration_method	Has dose form administration method
+has_dose_form_intended_site	Has dose form intended site
+has_dose_form_release_characteristic	Has dose form release characteristic
+has_dose_form_transformation	Has dose form transformation
+has_dose_form	Has dose form
+has_doseformgroup	Has dose form group
+has_entire_anatomy_structure	Has entire anatomy structure
+has_entry_combination	Has Entry Combination
+has_entry_term	Has entry term
+has_entry_version	Has entry version
+has_episodicity	Has episodicity
+has_evaluation	Has evaluation
+has_exam	Has exam
+has_excluded_approach	Has excluded approach
+has_excluded_associated_finding	Has excluded associated finding
+has_excluded_associated_procedure	Has excluded associated procedure
+has_excluded_component	Has excluded component
+has_excluded_locale	Has excluded locale
+has_excluded_method	Has excluded method
+has_excluded_pathology	Has excluded pathology
+has_excluded_patient_type	Has excluded patient type
+has_excluded_procedure_device	Has excluded procedure device
+has_excluded_procedure_site	Has excluded procedure site
+has_excluded_route_of_administration	Has excluded route of administration
+has_excluded_specimen	Has excluded specimen
+has_excluded_surgical_extent	Has excluded surgical extent
+has_expanded_form	Has expanded form
+has_expected_outcome	Has expected outcome
+has_extent	Has extent
+has_filling	Has filling
+has_finding_context	Has finding context
+has_finding_informer	Has finding informer
+has_finding_method	Has finding method
+has_finding_site	Has finding site
+has_focus	Has focus
+has_form	Has form
+has_free_acid_or_base_form	has free acid or base form
+has_full_grown_phenotype	has full grown phenotype
+has_fusion	has fusion
+has_gdc_value	has gdc value
+has_gene_product_element	has gene product element
+has_germ_origin	Has germ origin
+has_given_pharmaceutical_substance	Has given pharmaceutical substance
+has_grade	has grade
+has_icdc_value	has icdc value
+has_imaged_location	Has imaged location
+has_imaging_focus	Has imaging focus
+has_inactive_ingredient	Has Inactive Ingredient
+has_inc_parent	has inc parent
+has_indirect_device	Has indirect device
+has_indirect_morphology	Has indirect morphology
+has_indirect_procedure_site	Has indirect procedure site
+has_ingredient_characteristic	Has ingredient characteristic
+has_ingredient_qualitative_strength	Has ingredient qualitative strength
+has_ingredients	Has ingredients
+has_ingredient	Has ingredient
+has_inherent_3d_shape	Has inherent 3-D shape
+has_inherent_attribute	Has inherent attribute
+has_inherent_location	Has inherent location
+has_inheritance_type	Has inheritance type
+has_insertion	has insertion
+has_instrumentation	Has instrumentation
+has_intent	Has intent
+has_interpretation	Has interpretation
+has_lab_number	Has lab number
+has_lateral_anatomic_location	Has lateral anatomic location
+has_lateral_location_presence	Has lateral location presence
+has_laterality	Has laterality
+has_life_circumstance	Has life circumstance
+has_locale	Has locale
+has_location	Has location
+has_loinc_number	Has Loinc number
+has_lymphatic_drainage	Has lymphatic drainage
+has_maneuver_type	has maneuver type
+has_manifestation	Has manifestation
+has_mapping_qualifier	Has mapping qualifier
+has_measured_component	Has measured component
+has_measurement_method	Has measurement method
+has_mechanism_of_action	Has mechanism of action
+has_member	Has member
+has_method	Has method
+has_modality_subtype	Has modality subtype
+has_modality_type	has modality type
+has_modification	Has modification
+has_multi_level_category	Has multi-level category
+has_nerve_supply	Has nerve supply
+has_object_guidance	Has object guidance
+has_observed_anatomical_entity	has observed anatomical entity
+has_occurrence	Has occurrence
+has_onset	Has onset
+has_ooro_pc_value	has OORO PC value
+has_origin	Has origin
+has_owning_affiliate	Has owning affiliate
+has_owning_section	Has owning section
+has_owning_subsection	Has owning subsection
+has_panel_element	CPT laboratory panel code has laboratory panel test member
+has_parent_group	Has parent group
+has_parent	Has parent
+has_part_anatomy_structure	Has part anatomy structure
+has_part	Has part
+has_pathological_process	Has pathological process
+has_pathology	Has pathology
+has_patient_type	Has patient type
+has_pcdc_all_authorized_value	has PCDC ALL authorized value
+has_pcdc_aml_authorized_value	has PCDC AML authorized value
+has_pcdc_data_type	has pcdc data type
+has_pcdc_ews_authorized_value	has PCDC EWS authorized value
+has_pcdc_gct_authorized_value	has PCDC GCT authorized value
+has_pcdc_hl_authorized_value	has PCDC HL authorized value
+has_pcdc_os_authorized_value	has PCDC OS authorized value
+has_permuted_term	Has permuted term
+has_pharmaceutical_administration_method	has pharmaceutical administration method
+has_pharmaceutical_basic_dose_form	has pharmaceutical basic dose form
+has_pharmaceutical_intended_site	has pharmaceutical intended site
+has_pharmaceutical_release_characteristics	has pharmaceutical release characteristics
+has_pharmaceutical_route	Has_pharmaceutical_route
+has_pharmaceutical_state_of_matter	has pharmaceutical state of matter
+has_pharmaceutical_transformation	has pharmaceutical transformation
+has_pharmacokinetics	Has pharmacokinetics
+has_phenotype	Has phenotype
+has_physical_part_of_anatomic_structure	has physical part of anatomic structure
+has_physiologic_effect	Has physiologic effect
+has_physiologic_state	Has physiologic state
+has_possibly_included_approach	Has possibly included approach
+has_possibly_included_associated_finding	Has possibly included associated finding
+has_possibly_included_associated_procedure	Has possibly included associated procedure
+has_possibly_included_component	Has possibly included component
+has_possibly_included_method	Has possibly included method
+has_possibly_included_panel_element	CPT laboratory panel code has possibly included laboratory panel test member
+has_possibly_included_pathology	Has possibly included pathology
+has_possibly_included_patient_type	Has possibly included patient type
+has_possibly_included_procedure_device	Has possibly included procedure device
+has_possibly_included_procedure_site	Has possibly included procedure site
+has_possibly_included_route_of_administration	Has possibly included route of administration
+has_possibly_included_surgical_extent	Has possibly included surgical extent
+has_precise_active_ingredient	Has precise active ingredient
+has_precise_ingredient	Has precise ingredient
+has_precondition	Has precondition
+has_presence_guidance	Has presence guidance
+has_presentation_strength_denominator_unit	Has presentation strength denominator unit
+has_presentation_strength_denominator_value	Has presentation strength denominator value
+has_presentation_strength_numerator_unit	Has presentation strength numerator unit
+has_presentation_strength_numerator_value	Has presentation strength numerator value
+has_prev_name	Has previous name
+has_prev_symbol	Has previous symbol
+has_primary_segmental_supply	Has primary segmental supply
+has_print_name	Has print name
+has_priority	Has priority
+has_procedure_context	Has procedure context
+has_procedure_device	Has procedure device
+has_procedure_morphology	Has procedure morphology
+has_procedure_site	Has procedure site
+has_process_duration	Has process duration
+has_process_output	Has process output
+has_product_characteristic	Has product characteristic
+has_product_monograph_title	has product monograph title
+has_projection	has projection
+has_property_type	Has property type
+has_property	Has property
+has_quantified_form	Has quantified form
+has_realization	Has realization
+has_recipient_category	Has recipient category
+has_regional_part	Has regional part
+has_related_developmental_entity	has related developmental entity
+has_related_factor	Has related factor
+has_result	Has result
+has_revision_status	Has revision status
+has_risk_factor	Has risk factor
+has_route_of_administration	Has route of administration
+has_salt_form	has salt form
+has_scale_type	Has scale type
+has_scale	Has scale
+has_secondary_segmental_supply	Has secondary segmental supply
+has_segmental_composition	Has segmental composition
+has_segmental_supply	Has segmental supply
+has_seronet_authorized_value	has seronet authorized value
+has_severity	Has severity
+has_sign_or_symptom	Has sign or symptom
+has_single_level_category	Has single level category
+has_sort_version	Has sort version
+has_specialty	Has specialty
+has_specimen_procedure	Has specimen procedure
+has_specimen_source_identity	Has specimen source identity
+has_specimen_source_morphology	Has specimen source morphology
+has_specimen_source_topography	Has specimen source topography
+has_specimen_substance	Has specimen substance
+has_specimen	Has specimen
+has_stage	Has stage
+has_state_of_matter	Has state of matter
+has_structural_class	Structural class of
+has_subject_of_information	Has subject of information
+has_subject_relationship_context	Has subject relationship context
+has_subject	Has subject
+has_suffix	Has suffix
+has_supersystem	Has supersystem
+has_supported_concept_property	Has supported concept property
+has_supported_concept_relationship	Has supported concept relationship
+has_surface_characteristic	Has surface characteristic
+has_surface_texture	Has surface texture
+has_surgical_approach	has surgical approach
+has_surgical_extent	Has surgical extent
+has_system	Has system
+has_target_population	Has target population
+has_target	has target
+has_technique	Has technique
+has_temporal_context	Has temporal context
+has_therapeutic_class	Has therapeutic class
+has_time_aspect	Has time aspect
+has_time_modifier	Has time modifier
+has_timing_of	Has timing of
+has_tradename	Has tradename
+has_translation	Has translation
+has_transliterated_form	Has transliterated form
+has_tributary	Has tributary
+has_unit_of_presentation	Has unit of presentation
+has_units	Has units
+has_venous_drainage	Has venous drainage
+has_version	Has version
+has_view_type	Has view type
+homonym_for	Homonym for
+homonym_of	Homonym of
+human_disease_maps_to_eo_disease	human disease maps to eo disease
+icd_asterisk	ICD asterisk
+icd_dagger	ICD dagger
+icdc_value_of	icdc value of
+imaged_anatomy_has_procedure	imaged anatomy has procedure
+inactive_ingredient_of	Inactive Ingredient Of
+inc_parent_of	inc parent of
+included_in	included_in
+includes_sub_specimen	Includes sub specimen
+includes	includes
+indirect_device_of	Indirect device of
+indirect_morphology_of	Indirect morphology of
+indirect_procedure_site_of	Indirect procedure site of
+induced_by	Induced by
+induces	Induces
+inferior_to	inferior to
+inferolateral_to	inferolateral to
+inferomedial_to	inferomedial to
+ingredient_characteristic_of	Ingredient characteristic of
+ingredient_of	Ingredient of
+ingredient_qualitative_strength_of	Ingredient qualitative strength of
+ingredients_of	Ingredients of
+inherent_3d_shape_of	Inherent 3-D shape of
+inherent_location_of	Inherent location of
+inheres_in	Inheres in
+inheritance_type_of	Inheritance type of
+insertion_of	insertion of
+instrumentation_of	Instrumentation of
+intent_of	Intent of
+internal_to	internal to
+interpretation_of	Interpretation of
+interprets	Interprets
+inverse_during	Inverse during
+inverse_ends_during	Inverse ends during
+inverse_happens_during	Inverse happens during
+inverse_isa	Inverse is a
+inverse_relative_to	Inverse relative to
+inverse_was_a	Inverse was a
+is_abnormal_cell_of_disease	is abnormal cell of disease
+is_abnormality_of_gene_product	is abnormality of gene product
+is_abnormality_of_gene	is abnormality of gene
+is_acc-aha_sars2_authorized_value_for_variable	is ACC-AHA SARS2 authorized value for variable
+is_action_guidance_for	Is action guidance for
+is_aggregation_view_of	Is aggregation view of
+is_approach_guidance_for	Is approach guidance for
+is_associated_anatomic_site_of	is associated anatomic site of
+is_associated_anatomy_of_gene_product	is associated anatomy of gene product
+is_associated_disease_of	is associated disease of
+is_biochemical_function_of_gene_product	is biochemical function of gene product
+is_chemical_classification_of_gene_product	is chemical classification of gene product
+is_chromosomal_location_of_gene	is chromosomal location of gene
+is_component_of_chemotherapy_regimen	is component of chemotherapy regimen
+is_ctdc_value_of	is ctdc value of
+is_cytogenetic_abnormality_of_disease	is cytogenetic abnormality of disease
+is_dipg_dmg_authorized_value_for_variable	is DIPG DMG authorized value for variable
+is_exam_for	Is exam for
+is_finding_of_disease	is finding of disease
+is_given_pharmaceutical_substance_for	Is given pharmaceutical substance for
+is_grade_of_disease	is grade of disease
+is_imaged_location_for	Is imaged location for
+is_imaging_focus_of	Is imaging focus of
+is_interpreted_by	Is interpreted by
+is_lateral_anatomic_location_of	Is lateral anatomic location of
+is_location_of_anatomic_structure	is location of anatomic structure
+is_location_of_biological_process	is location of biological process
+is_maneuver_type_for	Is maneuver type for
+is_marked_by_gene_product	is marked by gene product
+is_mechanism_of_action_of_chemical_or_drug	is mechanism of action of chemical or drug
+is_metastatic_anatomic_site_of_disease	is metastatic anatomic site of disease
+is_modality_subtype_for	Is modality subtype for
+is_modality_type_for	Is modality type for
+is_modification_of	Is modification of
+is_molecular_abnormality_of_disease	is molecular abnormality of disease
+is_normal_cell_origin_of_disease	is normal cell origin of disease
+is_normal_tissue_origin_of_disease	is normal tissue origin of disease
+is_not_abnormal_cell_of_disease	is not abnormal cell of disease
+is_not_cytogenetic_abnormality_of_disease	is not cytogenetic abnormality of disease
+is_not_finding_of_disease	is not finding of disease
+is_not_metastatic_anatomic_site_of_disease	is not metastatic anatomic site of disease
+is_not_molecular_abnormality_of_disease	is not molecular abnormality of disease
+is_not_normal_cell_origin_of_disease	is not normal cell origin of disease
+is_not_normal_tissue_origin_of_disease	is not normal tissue origin of disease
+is_not_primary_anatomic_site_of_disease	is not primary anatomic site of disease
+is_object_guidance_for	Is object guidance for
+is_ooro_pc_value_of	is OORO PC value of
+is_organism_source_of_gene_product	is organism source of gene product
+is_paired_with_value_set	is paired with value set
+is_pcdc_all_authorized_value_for_variable	is PCDC ALL authorized value for variable
+is_pcdc_aml_authorized_value_for_variable	is PCDC AML authorized value for variable
+is_pcdc_ews_authorized_value_for_variable	is PCDC EWS authorized value for variable
+is_pcdc_gct_authorized_value_for_variable	is PCDC GCT authorized value for variable
+is_pcdc_hl_authorized_value_for_variable	is PCDC HL authorized value for variable
+is_pcdc_os_authorized_value_for_variable	is PCDC OS authorized value for variable
+is_pharmaceutical_route_for	Is pharmaceutical route for
+is_physical_location_of_gene	is physical location of gene
+is_physiologic_effect_of_chemical_or_drug	is physiologic effect of chemical or drug
+is_presence_guidance_for	Is presence guidance for
+is_presence_of_lateral_location	Is presence of lateral location
+is_primary_anatomic_site_of_disease	is primary anatomic site of disease
+is_property_or_attribute_of_eo_disease	is property or attribute of eo disease
+is_qualified_by	is qualified by
+is_related_to_endogenous_product	Is Related To Endogenous Product
+is_seronet_authorized_value_for_variable	is seronet authorized value for variable
+is_stage_of_disease	is stage of disease
+is_sterile	Is sterile
+is_structural_domain_or_motif_of_gene_product	is structural domain or motif of gene product
+is_subject_of	Is subject of
+is_target	is target
+is_timing_for	Is timing for
+is_value_for_gdc_property	is value for gdc property
+is_view_type_for	Is view type for
+isa	Is a
+kind_is_domain_of	kind is domain of
+kind_is_range_of	kind is range of
+lab_number_of	Lab number
+larger_than	Larger Than
+lateral_to	lateral to
+laterality_of	Laterality of
+left_lateral_to	left lateral to
+left_medial_to	left medial to
+life_circumstance_of	Life circumstance of
+locale_of_excluded	Locale of excluded
+locale_of	Locale of
+location_of	Location of
+loinc_number_of	Loinc number of
+lymphatic_drainage_of	Lymphatic drainage of
+manifestation_of	Manifestation of
+manufactured_by	manufactured by
+manufactures	manufactures
+mapped_from	Mapped from
+mapped_to	Mapped to
+mapping_qualifier_of	Mapping qualifier of
+matures_from	matures from
+matures_into	matures into
+may_be_abnormal_cell_of_disease	may be abnormal cell of disease
+may_be_associated_disease_of_disease	may be associated disease of disease
+may_be_cytogenetic_abnormality_of_disease	may be cytogenetic abnormality of disease
+may_be_diagnosed_by	May be diagnosed by
+may_be_finding_of_disease	may be finding of disease
+may_be_molecular_abnormality_of_disease	may be molecular abnormality of disease
+may_be_normal_cell_origin_of_disease	may be normal cell origin of disease
+may_be_normal_tissue_origin_of_disease	may be normal tissue origin of disease
+may_be_prevented_by	May be prevented by
+may_be_qualified_by	May be qualified by
+may_be_treated_by	May be treated by
+may_diagnose	May diagnose
+may_inhibit_effect_of	May inhibit effect of
+may_prevent	May prevent
+may_qualify	May qualify
+may_treat	May treat
+measured_by	Measured by
+measured_component_of	Measured component of
+measurement_method_of	Measurement method of
+measures	Measures
+mechanism_of_action_of	Mechanism of action of
+medial_to	medial to
+member_of	Member of
+merges_with	merges with
+metabolic_site_of	Metabolic site of
+method_of_excluded	Method of excluded
+method_of_possibly_included	Method of possibly included
+method_of	Method of
+modified_by	Modified by
+modifies	Modifies
+molecular_abnormality_involves_gene	molecular abnormality involves gene
+moved_from	Moved from
+moved_to	Moved to
+mth_british_form_of	MTH British form of
+mth_expanded_form_of	MTH expanded form of
+mth_has_british_form	MTH has British form
+mth_has_expanded_form	MTH has expanded form
+mth_has_plain_text_form	Has plain text form, Metathesaurus-asserted
+mth_has_xml_form	Has XML form, Metathesaurus-asserted
+mth_plain_text_form_of	Plain text form of, Metathesaurus-asserted
+mth_xml_form_of	XML form of, Metathesaurus-asserted
+multiply_mapped_from	Multiply mapped from
+multiply_mapped_to	Multiply mapped to
+negatively_regulated_by	Negatively regulated by
+negatively_regulates	Negatively regulates
+neoplasm_has_special_category	neoplasm has special category
+nerve_supply_of	Nerve supply of
+noun_form_of	Noun form of
+occurs_after	Occurs after
+occurs_before	Occurs before
+occurs_in	Occurs in
+onset_of	Onset of
+organism_has_gene	organism has gene
+origin_of	Origin of
+other_mapped_from	Other mapped from
+other_mapped_to	Other mapped to
+owning_affiliate_of	Owning affiliate of
+owning_section_of	Owning section of
+owning_subsection_of	Owning subsection of
+panel_element_of_possibly_included	CPT laboratory panel test member is possibly included element of laboratory code
+panel_element_of	CPT laboratory panel test member is element of laboratory code
+parent_group_of	Parent group of
+parent_of	Parent of
+part_anatomy_structure_of	Part anatomy structure of
+part_of	Part of
+part_referred_to_by	Part referred to by
+partially_equivalent_to	Partially equivalent to
+partially_excised_anatomy_has_procedure	partially excised anatomy has procedure
+partially_excised_anatomy_may_have_procedure	partially excised anatomy may have procedure
+pathogenesis_of_disease_involves_gene	pathogenesis of disease involves gene
+pathological_process_of	Pathological process of
+pathology_of_excluded	Pathology of excluded
+pathology_of_possibly_included	Pathology of possibly included
+pathology_of	Pathology of
+pathway_has_gene_element	pathway has gene element
+patient_type_of_excluded	Patient type of excluded
+patient_type_of_possibly_included	Patient type of possibly included
+patient_type_of	Patient type of
+pcdc_data_type_of	pcdc data type of
+permuted_term_of	Permuted term of
+pharmaceutical_administration_method_of	pharmaceutical administration method of
+pharmaceutical_basic_dose_form_of	pharmaceutical basic dose form of
+pharmaceutical_intended_site_of	pharmaceutical intended site of
+pharmaceutical_release_characteristics_of	pharmaceutical release characteristics of
+pharmaceutical_state_of_matter_of	pharmaceutical state of matter of
+pharmaceutical_transformation_of	pharmaceutical transformation_of
+pharmacokinetics_of	Pharmacokinetics of
+phenotype_of	Phenotype of
+physiologic_effect_of	Physiologic effect of
+physiologic_state_of	Physiologic state of
+place_traveled_from	Place traveled from
+place_traveled_to	Place traveled to or resided in
+plays_role	Plays role
+population_at_risk_for	Population at risk for
+positively_regulated_by	Positively regulated by
+positively_regulates	Positively regulates
+possibly_equivalent_to	Possibly equivalent to
+possibly_replaced_by	Possibly replaced by
+possibly_replaces	Possibly replaces
+posterior_to	posterior to
+posteroinferior_to	posteroinferior to
+posterolateral_to	posterolateral to
+posteromedial_to	posteromedial to
+posterosuperior_to	posterosuperior to
+precise_active_ingredient_of	Precise active ingredient of
+precise_ingredient_of	Precise ingredient of
+precondition_of	Precondition of
+presentation_strength_denominator_unit_of	Presentation strength denominator unit of
+presentation_strength_denominator_value_of	Presentation strength denominator value of
+presentation_strength_numerator_unit_of	Presentation strength numerator unit of
+presentation_strength_numerator_value_of	Presentation strength numerator value of
+prev_name_of	Previous name of
+prev_symbol_of	Previous symbol of
+primary_mapped_from	Primary mapped from
+primary_mapped_to	Primary mapped to
+primary_segmental_supply_of	Primary segmental supply of
+print_name_of	Print name of
+priority_of	Priority of
+procedure_context_of	Procedure context of
+procedure_device_of_excluded	Procedure device of excluded
+procedure_device_of_possibly_included	Procedure device of possibly included
+procedure_device_of	Procedure device of
+procedure_has_completely_excised_anatomy	procedure has completely excised anatomy
+procedure_has_excised_anatomy	procedure has excised anatomy
+procedure_has_imaged_anatomy	procedure has imaged anatomy
+procedure_has_partially_excised_anatomy	procedure has partially excised anatomy
+procedure_has_target_anatomy	procedure has target anatomy
+procedure_may_have_completely_excised_anatomy	procedure may have completely excised anatomy
+procedure_may_have_excised_anatomy	procedure may have excised anatomy
+procedure_may_have_partially_excised_anatomy	procedure may have partially excised anatomy
+procedure_morphology_of	Procedure morphology of
+procedure_site_of_excluded	Procedure site of excluded
+procedure_site_of_possibly_included	Procedure site of possibly included
+procedure_site_of	Procedure site of
+process_acts_on	Process acts on
+process_altered_by_allele	process altered by allele
+process_duration_of	Process duration of
+process_extends_to	Process extends to
+process_includes_biological_process	process includes biological process
+process_initiates_biological_process	process initiates biological process
+process_involves_gene	process involves gene
+process_output_of	Process output of
+product_characteristic_of	Product characteristic of
+product_monograph_title_of	product monograph title of
+projects_from	projects from
+projects_to	projects to
+property_of	Property of
+property_type_of	Property type of
+proximal_to	proximal to
+qualifier_applies_to	qualifier applies to
+quantified_form_of	Quantified form of
+realization_of	Realization of
+receives_attachment_from	receives attachment from
+receives_drainage_from	receives drainage from
+receives_input_from	Receives input from
+receives_projection	receives projection
+recipient_category_of	Recipient category of
+referred_to_by	referred to by
+refers_to	refers to
+reformulated_to	Reformulated to
+reformulation_of	Reformulation of
+regimen_has_accepted_use_for_disease	Regimen Has Accepted Use For Disease
+regional_part_of	Regional part of
+regulated_by	Regulated by
+regulates	Regulates
+related_developmental_entity_of	related developmental entity of
+related_factor_of	Related factor of
+related_object	related object
+related_part	related part
+related_to_genetic_biomarker	related to genetic biomarker
+related_to	Is Related to
+relative_to_part_of	Relative to part of
+relative_to	Relative to
+replaced_by	Replaced by
+replaces	Replaces
+result_of	Result of
+revision_status_of	Revision status of
+right_lateral_to	right lateral to
+right_medial_to	right medial to
+risk_factor_of	Risk factor of
+role_has_domain	role has domain
+role_has_parent	role has parent
+role_has_range	role has range
+role_is_parent_of	role is parent of
+role_played_by	Role played by
+route_of_administration_of_excluded	Route of administration of excluded
+route_of_administration_of_possibly_included	Route of administration of possibly included
+route_of_administration_of	Route of administration of
+same_as	Same as
+scale_of	Scale of
+scale_type_of	Scale type of
+secondary_segmental_supply_of	Secondary segmental supply of
+see_from	See from
+see	See
+segmental_composition_of	Segmental composition of
+segmental_supply_of	Segmental supply of
+sends_output_to	Sends output to
+severity_of	Severity of
+sign_or_symptom_of	Sign or symptom of
+site_of_metabolism	Site of metabolism
+smaller_than	Smaller Than
+sort_version_of	Sort version of
+special_category_includes_neoplasm	special category includes neoplasm
+specialty_of	Specialty of
+specimen_of_excluded	Specimen of excluded
+specimen_of	Specimen of
+specimen_procedure_of	Specimen procedure of
+specimen_source_identity_of	Specimen source identity of
+specimen_source_morphology_of	Specimen source morphology of
+specimen_source_topography_of	specimen source topography of
+specimen_substance_of	Specimen substance of
+ssc	scc
+stage_of	Stage of
+state_of_matter_of	State of matter of
+structural_class_of	Has structural class
+sub_specimen_included_by	Sub specimen included by
+subject_of_information_of	Subject of information of
+subject_relationship_context_of	Subject relationship context of
+subset_includes_concept	subset includes concept
+substance_used_by_excluded	Substance used by excluded
+substance_used_by_possibly_included	Substance used by possibly included
+substance_used_by	Substance used by
+suffix_of	Suffix of
+superior_to	superior to
+superolateral_to	superolateral to
+superomedial_to	superomedial to
+supersystem_of	Supersystem of
+supported_concept_property_in	Supported concept property in
+supported_concept_relationship_in	Supported concept relationship in
+surface_characteristic_of	Surface characteristic of
+surface_texture_of	Surface texture of
+surgical_approach_of	surgical approach of
+surgical_extent_of_excluded	Surgical extent of excluded
+surgical_extent_of_possibly_included	Surgical extent of possibly included
+surgical_extent_of	Surgical extent of
+surrounded_by	Surrounded by
+surrounds	Surrounds
+system_of	System of
+target_anatomy_has_procedure	target anatomy has procedure
+target_population_of	Target population of
+technique_of	Technique of
+temporal_context_of	Temporal context of
+temporally_followed_by	Temporally followed by
+temporally_follows	Temporally follows
+temporally_related_to	Temporally related to
+therapeutic_class_of	Therapeutic class of
+time_aspect_of	Time aspect of
+time_modifier_of	Time modifier of
+tissue_is_expression_site_of_gene_product	tissue is expression site of gene product
+towards	Towards
+tradename_of	Tradename of
+transforms_from	transforms from
+transforms_into	transforms into
+translation_of	Translation of
+transliterated_form_of	transliterated_form_of
+treated_by	Treated by
+treats	Treats
+tributary_of	Tributary of
+uniquely_mapped_from	Uniquely mapped from
+uniquely_mapped_to	Uniquely mapped to
+unit_of_presentation_of	Unit of presentation of
+units_of	Units of
+used_by	Used by
+used_for	Used for
+uses_access_device	Uses access device
+uses_device	Uses device
+uses_energy	Uses energy
+uses_excluded_substance	Uses excluded substance
+uses_possibly_included_substance	Uses possibly included substance
+uses_substance	Uses substance
+uses	Uses
+use	Use
+value_set_is_paired_with	value set is paired with
+venous_drainage_of	Venous drainage of
+version_of	Version of
+was_a	Was a
+wound_has_communication_with	Wound has communication with
diff --git a/cumulus_library_umls/static_files/umls_tty.tsv b/cumulus_library_umls/static_files/umls_tty.tsv
new file mode 100644
index 0000000..596b676
--- /dev/null
+++ b/cumulus_library_umls/static_files/umls_tty.tsv
@@ -0,0 +1,243 @@
+TTY	TTY_STR
+AA	Attribute type abbreviation
+AB	Abbreviation in any source vocabulary
+ACR	Acronym
+AC	Activities
+AD	Adjective
+AM	Short form of modifier
+AS	Attribute type synonym
+AT	Attribute type
+BD	Fully-specified drug brand name that can be prescribed
+BN	Fully-specified drug brand name that can not be prescribed
+BPCK	Branded Drug Delivery Device
+BR	Binding realm
+CA2	ISO 3166-1 standard country code in alpha-2 (two-letter) format
+CA3	ISO 3166-1 standard country code in alpha-3 (three-letter) format
+CCN	Chemical code name
+CCS	FIPS 10-4 country code
+CC	Trimmed ICPC component process
+CDA	Clinical drug name in abbreviated format
+CDC	Clinical drug name in concatenated format (NDDF)
+CDD	Clinical drug name in delimited format
+CDO	Concept domain
+CD	Clinical Drug
+CE	Entry term for a Supplementary Concept
+CHN	Chemical structure name
+CL	Class
+CMN	Common name
+CN	LOINC official component name
+CO	Component name (hierarchical terms, not LOINC analytes)
+CPR	Concept property
+CP	ICPC component process (in original form)
+CR	Concept relationship
+CSN	Chemical Structure Name
+CSY	Code system
+CS	Short component process in ICPC, i.e. include some abbreviations
+CU	Common usage
+CV	Content view
+CX	Component, with abbreviations expanded.
+DC10	Diagnostic criteria for ICD10 code
+DC9	Diagnostic criteria for ICD9 code
+DEV	Descriptor entry version
+DE	Descriptor
+DFG	Dose Form Group
+DF	Dose Form
+DI	Disease name
+DN	Display Name
+DO	Domain
+DP	Drug Product
+DSV	Descriptor sort version
+DS	Short form of descriptor
+DT	Definitional term
+EP	Print entry term
+EQ	Equivalent name
+ES	Short form of entry term
+ETAL	Entry Term Alias
+ETCF	Entry term, consumer friendly description
+ETCLIN	Entry term, clinician description
+ET	Entry term
+EX	Expanded form of entry term
+FBD	Foreign brand name
+FI	Finding name
+FN	Full form of descriptor
+FSY	Foreign Synonym
+GLP	Global period
+GN	Generic drug name
+GO	Goal
+GPCK	Generic Drug Delivery Device
+GT	Glossary term
+HC	Hierarchical class
+HD	Hierarchical descriptor
+HGJKN1	Japanese High Level Group Term (kana1)
+HGJKN	Japanese High Level Group Term (kana)
+HG	High Level Group Term
+HS	Short or alternate version of hierarchical term
+HTJKN1	Japanese Hierarchical term (kana1)
+HTJKN	Japanese Hierarchical term (kana)
+HTN	HL7 Table Name
+HT	Hierarchical term
+HX	Expanded version of short hierarchical term
+ID	Nursing indicator
+IN	Name for an ingredient
+IS	Obsolete Synonym
+IT	Index term
+IVC	Intervention categories
+IV	Intervention
+LA	LOINC answer
+LC	Long common name
+LG	LOINC group
+LLTJKN1	Japanese Lower Level Term (kana1)
+LLTJKN	Japanese Lower Level Term (kana)
+LLT	Lower Level Term
+LN	LOINC official fully specified name
+LO	Obsolete official fully specified name
+LPDN	LOINC parts display name
+LPN	LOINC parts name
+LS	Expanded system/sample type
+LVDN	Linguistic variant display name
+LV	Lexical variant
+MD	CCS multi-level diagnosis categories
+MH	Main heading
+MIN	name for a multi-ingredient
+MP	Preferred names of modifiers
+MS	Multum names of branded and generic supplies or supplements
+MTH_ACR	MTH acronym
+MTH_CN	MTH Component, with abbreviations expanded.
+MTH_ET	Metathesaurus entry term
+MTH_FN	MTH Full form of descriptor
+MTH_HG	MTH High Level Group Term
+MTH_HT	MTH Hierarchical term
+MTH_HX	MTH Hierarchical term expanded
+MTH_IS	Metathesaurus-supplied form of obsolete synonym
+MTH_LLT	MTH Lower Level Term
+MTH_LN	MTH Official fully specified name with expanded abbreviations
+MTH_LO	MTH Expanded LOINC obsolete fully specified name
+MTH_OAF	Metathesaurus-supplied form of obsolete active fully specified name
+MTH_OAP	Metathesaurus-supplied form of obsolete active preferred term
+MTH_OAS	Metathesaurus-supplied form of obsolete active synonym
+MTH_OET	Metathesaurus obsolete entry term
+MTH_OF	Metathesaurus-supplied form of obsolete fully specified name
+MTH_OL	MTH Non-current Lower Level Term
+MTH_OPN	Metathesaurus obsolete preferred term, natural language form
+MTH_OP	Metathesaurus obsolete preferred term
+MTH_OS	MTH System-organ class
+MTH_PTGB	Metathesaurus-supplied form of British preferred term
+MTH_PTN	Metathesaurus preferred term, natural language form
+MTH_PT	Metathesaurus preferred term
+MTH_RXN_BD	RxNorm Created BD
+MTH_RXN_CDC	RxNorm Created CDC
+MTH_RXN_CD	RxNorm Created CD
+MTH_RXN_DP	RxNorm Created DP
+MTH_SI	MTH Sign or symptom of
+MTH_SMQ	Metathesaurus version of Standardised MedDRA Query
+MTH_SYGB	Metathesaurus-supplied form of British synonym
+MTH_SY	MTH Designated synonym
+MV	Multi-level procedure category
+N1	Chemical Abstracts Service Type 1 name of a chemical
+NA	Name aliases
+NM	Name of Supplementary Concept
+NPT	HL7 non-preferred for language term
+NP	Non-preferred term
+NS	Short form of non-preferred term
+NX	Expanded form of non-preferred term
+OAF	Obsolete active fully specified name
+OAM	Obsolete Modifier Abbreviation
+OAP	Obsolete active preferred term
+OAS	Obsolete active synonym
+OA	Obsolete abbreviation
+OC	Nursing outcomes
+OET	Obsolete entry term
+OF	Obsolete fully specified name
+OLC	Obsolete Long common name
+OLG	Obsolete LOINC group name
+OLJKN1	Japanese Non-current Lower Level Term (kana1)
+OLJKN	Japanese Non-current Lower Level Term (kana)
+OL	Non-current Lower Level Term
+OM	Obsolete modifiers in HCPCS
+ONP	Obsolete non-preferred for language term
+OOSN	Obsolete official short name
+OPN	Obsolete preferred term, natural language form
+OP	Obsolete preferred name
+OR	Orders
+OSJKN1	Japanese System-organ class WHO Adverse Reaction Terminology (kana1)
+OSJKN	Japanese System-organ class WHO Adverse Reaction Terminology (kana)
+OSN	Official short name
+OS	System-organ class
+PCE	Preferred entry term for Supplementary Concept
+PC	Preferred "trimmed term" in ICPC
+PEP	Preferred entry term
+PHENO_ET	Phenotype entry term
+PHENO	Phenotype
+PIN	Name from a precise ingredient
+PM	Machine permutation
+PN	Metathesaurus preferred name
+POS	Place of service
+PQ	Qualifier for a problem
+PR	Name of a problem
+PSC	Protocol selection criteria
+PSN	Prescribable Names
+PS	Short forms that needed full specification
+PTAV	Preferred Allelic Variant
+PTCS	Preferred Clinical Synopsis
+PTGB	British preferred term
+PTJKN1	Japanese Designated preferred name (kana1)
+PTJKN	Japanese Designated preferred name (kana)
+PTN	Preferred term, natural language form
+PT	Designated preferred name
+PXQ	Preferred qualifier term
+PX	Expanded preferred terms (pair with PS)
+QAB	Qualifier abbreviation
+QEV	Qualifier entry version
+QSV	Qualifier sort version
+RAB	Root abbreviation
+RHT	Root hierarchical term
+RPT	Root preferred term
+RSY	Root synonym
+RS	Extracted related names in SNOMED2
+RT	Term is related to, but often non-synonymous with, the preferred term
+RXN_IN	Rxnorm Preferred Ingredient
+RXN_PT	Rxnorm Preferred
+SBDC	Semantic Branded Drug Component
+SBDFP	Semantic branded drug and form w/ precise ingredient as basis strength
+SBDF	Semantic branded drug and form
+SBDG	Semantic branded drug group
+SBD	Semantic branded drug
+SB	Named subset of a source
+SCALE	Scale
+SCDC	Semantic Drug Component
+SCDFP	Semantic clinical drug and form w/ precise ingredient as basis strength
+SCDF	Semantic clinical drug and form
+SCDGP	Semantic clinical drug group w/ precise ingredient as basis strength
+SCDG	Semantic clinical drug group
+SCD	Semantic Clinical Drug
+SCN	Scientific name
+SC	Special Category term
+SD	CCS diagnosis categories
+SI	Name of a sign or symptom of a problem
+SMQ	Standardised MedDRA Query
+SP	CCS procedure categories
+SSN	Source short name, used in the UMLS Knowledge Source Server
+SS	Synonymous "short" forms
+ST	Step
+SU	Active Substance
+SX	Mixed-case component synonym with expanded abbreviations
+SYGB	British synonym
+SYN	Designated alias
+SY	Designated synonym
+TA	Task
+TC	Term class
+TG	Name of the target of an intervention
+TMSY	Tall Man synonym
+TQ	Topical qualifier
+TX	CCPSS synthesized problems for TC termgroup
+UCN	Unique common name
+UE	Unique equivalent name
+USN	Unique scientific name
+USY	Unique synonym
+VAB	Versioned abbreviation
+VPT	Versioned preferred term
+VSY	Versioned synonym
+VS	Value Set
+XD	Expanded descriptor in AOD
+XM	Cross mapping set
+XQ	Alternate name for a qualifier
\ No newline at end of file
diff --git a/cumulus_library_umls/static_files/umls_tui.tsv b/cumulus_library_umls/static_files/umls_tui.tsv
new file mode 100644
index 0000000..d2f6f8c
--- /dev/null
+++ b/cumulus_library_umls/static_files/umls_tui.tsv
@@ -0,0 +1,128 @@
+aabr	TUI	STY
+aapp	T116	Amino Acid, Peptide, or Protein
+acab	T020	Acquired Abnormality
+acty	T052	Activity
+aggp	T100	Age Group
+amas	T087	Amino Acid Sequence
+amph	T011	Amphibian
+anab	T190	Anatomical Abnormality
+anim	T008	Animal
+anst	T017	Anatomical Structure
+antb	T195	Antibiotic
+arch	T194	Archaeon
+bacs	T123	Biologically Active Substance
+bact	T007	Bacterium
+bdsu	T031	Body Substance
+bdsy	T022	Body System
+bhvr	T053	Behavior
+biof	T038	Biologic Function
+bird	T012	Bird
+blor	T029	Body Location or Region
+bmod	T091	Biomedical Occupation or Discipline
+bodm	T122	Biomedical or Dental Material
+bpoc	T023	Body Part, Organ, or Organ Component
+bsoj	T030	Body Space or Junction
+celc	T026	Cell Component
+celf	T043	Cell Function
+cell	T025	Cell
+cgab	T019	Congenital Abnormality
+chem	T103	Chemical
+chvf	T120	Chemical Viewed Functionally
+chvs	T104	Chemical Viewed Structurally
+clas	T185	Classification
+clna	T201	Clinical Attribute
+clnd	T200	Clinical Drug
+cnce	T077	Conceptual Entity
+comd	T049	Cell or Molecular Dysfunction
+crbs	T088	Carbohydrate Sequence
+diap	T060	Diagnostic Procedure
+dora	T056	Daily or Recreational Activity
+drdd	T203	Drug Delivery Device
+dsyn	T047	Disease or Syndrome
+edac	T065	Educational Activity
+eehu	T069	Environmental Effect of Humans
+elii	T196	Element, Ion, or Isotope
+emod	T050	Experimental Model of Disease
+emst	T018	Embryonic Structure
+enty	T071	Entity
+enzy	T126	Enzyme
+euka	T204	Eukaryote
+evnt	T051	Event
+famg	T099	Family Group
+ffas	T021	Fully Formed Anatomical Structure
+fish	T013	Fish
+fndg	T033	Finding
+fngs	T004	Fungus
+food	T168	Food
+ftcn	T169	Functional Concept
+genf	T045	Genetic Function
+geoa	T083	Geographic Area
+gngm	T028	Gene or Genome
+gora	T064	Governmental or Regulatory Activity
+grpa	T102	Group Attribute
+grup	T096	Group
+hcpp	T068	Human-caused Phenomenon or Process
+hcro	T093	Health Care Related Organization
+hlca	T058	Health Care Activity
+hops	T131	Hazardous or Poisonous Substance
+horm	T125	Hormone
+humn	T016	Human
+idcn	T078	Idea or Concept
+imft	T129	Immunologic Factor
+inbe	T055	Individual Behavior
+inch	T197	Inorganic Chemical
+inpo	T037	Injury or Poisoning
+inpr	T170	Intellectual Product
+irda	T130	Indicator, Reagent, or Diagnostic Aid
+lang	T171	Language
+lbpr	T059	Laboratory Procedure
+lbtr	T034	Laboratory or Test Result
+mamm	T015	Mammal
+mbrt	T063	Molecular Biology Research Technique
+mcha	T066	Machine Activity
+medd	T074	Medical Device
+menp	T041	Mental Process
+mnob	T073	Manufactured Object
+mobd	T048	Mental or Behavioral Dysfunction
+moft	T044	Molecular Function
+mosq	T085	Molecular Sequence
+neop	T191	Neoplastic Process
+nnon	T114	Nucleic Acid, Nucleoside, or Nucleotide
+npop	T070	Natural Phenomenon or Process
+nusq	T086	Nucleotide Sequence
+ocac	T057	Occupational Activity
+ocdi	T090	Occupation or Discipline
+orch	T109	Organic Chemical
+orga	T032	Organism Attribute
+orgf	T040	Organism Function
+orgm	T001	Organism
+orgt	T092	Organization
+ortf	T042	Organ or Tissue Function
+patf	T046	Pathologic Function
+phob	T072	Physical Object
+phpr	T067	Phenomenon or Process
+phsf	T039	Physiologic Function
+phsu	T121	Pharmacologic Substance
+plnt	T002	Plant
+podg	T101	Patient or Disabled Group
+popg	T098	Population Group
+prog	T097	Professional or Occupational Group
+pros	T094	Professional Society
+qlco	T080	Qualitative Concept
+qnco	T081	Quantitative Concept
+rcpt	T192	Receptor
+rept	T014	Reptile
+resa	T062	Research Activity
+resd	T075	Research Device
+rnlw	T089	Regulation or Law
+sbst	T167	Substance
+shro	T095	Self-help or Relief Organization
+socb	T054	Social Behavior
+sosy	T184	Sign or Symptom
+spco	T082	Spatial Concept
+tisu	T024	Tissue
+tmco	T079	Temporal Concept
+topp	T061	Therapeutic or Preventive Procedure
+virs	T005	Virus
+vita	T127	Vitamin
+vtbt	T010	Vertebrate
diff --git a/cumulus_library_umls/umls/umls_builder.py b/cumulus_library_umls/umls_builder.py
similarity index 100%
rename from cumulus_library_umls/umls/umls_builder.py
rename to cumulus_library_umls/umls_builder.py
diff --git a/tests/test_static_builder.py b/tests/test_static_builder.py
new file mode 100644
index 0000000..7829022
--- /dev/null
+++ b/tests/test_static_builder.py
@@ -0,0 +1,73 @@
+from cumulus_library import base_utils, databases, db_config, study_manifest
+
+from cumulus_library_umls import static_builder
+
+
+def test_static_tables(tmp_path):
+    db_config.db_type = "duckdb"
+    config = base_utils.StudyConfig(
+        db=databases.DuckDatabaseBackend(f"{tmp_path}/duckdb"),
+        umls_key="123",
+        schema="main",
+    )
+    cursor = config.db.cursor()
+    cursor.execute("CREATE SCHEMA umls")
+    manifest = study_manifest.StudyManifest()
+    manifest._study_config = {
+        "study_prefix": "umls",
+        "advanced_options": {"dedicated_schema": "umls"},
+    }
+    manifest._advanced_config = {}
+    builder = static_builder.StaticBuilder()
+    builder.execute_queries(config=config, manifest=manifest)
+
+    for table_conf in [
+        {
+            "name": "semantic_types",
+            "size": 127,
+            "first": ("aapp", "T116", "Amino Acid, Peptide, or Protein"),
+            "last": ("vtbt", "T010", "Vertebrate"),
+        },
+        {
+            "name": "semantic_groups",
+            "size": 127,
+            "first": ("ACTI", "Activities & Behaviors", "T052", "Activity"),
+            "last": (
+                "PROC",
+                "Procedures",
+                "T061",
+                "Therapeutic or Preventive Procedure",
+            ),
+        },
+        {
+            "name": "rel_description",
+            "size": 13,
+            "first": ("AQ", "Allowed qualifier"),
+            "last": ("XR", "Not related, no mapping"),
+        },
+        {
+            "name": "rela_description",
+            "size": 1023,
+            "first": (
+                "abnormal_cell_affected_by_chemical_or_drug",
+                "abnormal cell affected by chemical or drug",
+            ),
+            "last": ("wound_has_communication_with", "Wound has communication with"),
+        },
+        {
+            "name": "tty_description",
+            "size": 242,
+            "first": ("AA", "Attribute type abbreviation"),
+            "last": ("XQ", "Alternate name for a qualifier"),
+        },
+        {
+            "name": "tui_description",
+            "size": 127,
+            "first": ("aapp", "T116", "Amino Acid, Peptide, or Protein"),
+            "last": ("vtbt", "T010", "Vertebrate"),
+        },
+    ]:
+        res = cursor.execute(f"SELECT * from umls.{table_conf['name']}").fetchall()
+        assert len(res) == table_conf["size"]
+        assert res[0] == table_conf["first"]
+        assert res[-1] == table_conf["last"]
diff --git a/tests/test_umls_builder.py b/tests/test_umls_builder.py
index f71c004..607babe 100644
--- a/tests/test_umls_builder.py
+++ b/tests/test_umls_builder.py
@@ -5,7 +5,7 @@
 import responses
 from cumulus_library import base_utils, databases, db_config, study_manifest
 
-from cumulus_library_umls.umls import umls_builder
+from cumulus_library_umls import umls_builder
 
 AUTH_URL = "https://utslogin.nlm.nih.gov/validateUser"
 RELEASE_URL = "https://uts-ws.nlm.nih.gov/releases"

From dbd122dad6a0ca5f003c5ef9c6abad1a1b13a8c3 Mon Sep 17 00:00:00 2001
From: Matt Garber <matthew.garber@childrens.harvard.edu>
Date: Fri, 30 Aug 2024 15:12:31 -0400
Subject: [PATCH 2/2] mac proofing

---
 .gitignore                                  |   1 +
 cumulus_library_umls/static_files/.DS_Store | Bin 6148 -> 0 bytes
 2 files changed, 1 insertion(+)
 delete mode 100644 cumulus_library_umls/static_files/.DS_Store

diff --git a/.gitignore b/.gitignore
index 47d9100..162165d 100644
--- a/.gitignore
+++ b/.gitignore
@@ -5,6 +5,7 @@ generated_parquet/
 downloads/
 generated_parquet/
 output.sql
+.DS_Store
 
 # Byte-compiled / optimized / DLL files
 __pycache__/
diff --git a/cumulus_library_umls/static_files/.DS_Store b/cumulus_library_umls/static_files/.DS_Store
deleted file mode 100644
index 5008ddfcf53c02e82d7eee2e57c38e5672ef89f6..0000000000000000000000000000000000000000
GIT binary patch
literal 0
HcmV?d00001

literal 6148
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