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Here is a list of some papers that have recently (as of mid-2016) used ASTRAL or ASTRAL-II. For complete citations, see one of these entries in google scholar: ASTRAL-I, ASTRAL-II, and Local pp.

  • Plants: Wickett, et al., 2014, PNAS [1]
  • Birds: Prum, et al., 2015, Nature [2]
  • Xenoturbella, Cannon et al., 2016, Nature [3]
  • Xenoturbella, Rouse et al., 2016, Nature [4]
  • Flatworms: Laumer, et al., 2015, eLife [5]
  • Shrews: Giarla, et al., 2015, Syst. Bio. [6]
  • Frogs: Yuan et al., 2016, Syst. Bio. [7]
  • Tomatoes: Pease, et al., 2016, PLoS Bio. [8]
  • Angiosperms: Huang et al., 2016, MBE [9]
  • Worms: Andrade, et al., 2015, MBE [10]
  • Fungi: Dutheil et al., 2016, Gen. Bio. Evo. [11]
  1. Wickett NJ, Mirarab S, Nguyen N, Warnow T, Carpenter EJ, Matasci N, Ayyampalayam S, Barker MS, Burleigh JG, Gitzendanner MA, Ruhfel BR, Wafula E, Der JP, Graham SW, Mathews S, Melkonian M, Soltis DE, Soltis PS, Miles NW, Rothfels CJ, Pokorny L, Shaw AJ, DeGironimo L, Stevenson DW, Surek B, Villarreal JC, Roure B, Philippe H, DePamphilis CW, Chen T, Deyholos MK, Baucom RS, Kutchan TM, Augustin MM, Wang J, Zhang Y, Tian Z, Yan Z, Wu X, Sun X, Wong GK-S, Leebens-Mack J. Phylotranscriptomic analysis of the origin and early diversification of land plants. Proc Natl Acad Sci. 2014 Oct 29;111(45):E4859–4868. PMCID: PMC4234587
  2. Prum RO, Berv JS, Dornburg A, Field DJ, Townsend JP, Lemmon EM, Lemmon AR. A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing. Nature. Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved.; 2015 Oct 7;
  3. Cannon JT, Vellutini BC, Smith J, Ronquist F, Jondelius U, Hejnol A. Xenacoelomorpha is the sister group to Nephrozoa. Nature. Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved.; 2016 Feb 4;530(7588):89–93.
  4. Rouse GW, Wilson NG, Carvajal JI, Vrijenhoek RC. New deep-sea species of Xenoturbella and the position of Xenacoelomorpha. Nature. Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved.; 2016 Feb 4;530(7588):94–97.
  5. Laumer CE, Hejnol A, Giribet G. Nuclear genomic signals of the “microturbellarian” roots of platyhelminth evolutionary innovation. Elife. 2015 Mar 12;4. PMCID: PMC4398949
  6. Giarla TC, Esselstyn JA. The Challenges of Resolving a Rapid, Recent Radiation: Empirical and Simulated Phylogenomics of Philippine Shrews. Syst Biol. Oxford University Press; 2015;syv029.
  7. Yuan Z-Y, Zhou W-W, Chen X, Poyarkov NA, Chen H-M, Jang-Liaw N-H, Chou W-H, Matzke NJ, Iizuka K, Min M-S, Kuzmin SL, Zhang Y-P, Cannatella DC, Hillis DM, Che J. Spatiotemporal Diversification of the True Frogs (Genus Rana): A Historical Framework for a Widely Studied Group of Model Organisms. Syst Biol . 2016 Jun 10;
  8. Pease JB, Haak DC, Hahn MW, Moyle LC. Phylogenomics Reveals Three Sources of Adaptive Variation during a Rapid Radiation. PLoS Biol. Public Library of Science; 2016 Feb 12;14(2):e1002379.
  9. Huang C-H, Sun R, Hu Y, Zeng L, Zhang N, Cai L, Zhang Q, Koch MA, Al-Shehbaz I, Edger PP. Resolution of Brassicaceae phylogeny using nuclear genes uncovers nested radiations and supports convergent morphological evolution. Mol Biol Evol. SMBE; 2016;33(2):394–412.
  10. Andrade SCS, Novo M, Kawauchi GY, Worsaae K, Pleijel F, Giribet G, Rouse GW. Articulating “archiannelids”: Phylogenomics and annelid relationships, with emphasis on meiofaunal taxa. Mol Biol Evol. 2015; 

  11. Dutheil JY, Mannhaupt G, Schweizer G, Sieber CMK, Münsterkötter M, Güldener U, Schirawski J, Kahmann R. A tale of genome compartmentalization: the evolution of virulence clusters in smut fungi. Genome Biol Evol. Oxford University Press; 2016;8(3):681–704.