diff --git a/bio/sra-tools/fasterq-dump/environment.linux-64.pin.txt b/bio/sra-tools/fasterq-dump/environment.linux-64.pin.txt
index 2d5ff03cbe4..d304f1a8594 100644
--- a/bio/sra-tools/fasterq-dump/environment.linux-64.pin.txt
+++ b/bio/sra-tools/fasterq-dump/environment.linux-64.pin.txt
@@ -1,45 +1,51 @@
 # This file may be used to create an environment using:
 # $ conda create --name <env> --file <this file>
 # platform: linux-64
+# created-by: conda 24.9.2
 @EXPLICIT
 https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
-https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2024.2.2-hbcca054_0.conda#2f4327a1cbe7f022401b236e915a5fef
-https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.40-hf3520f5_1.conda#33b7851c39c25da14f6a233a8ccbeeca
-https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-13.2.0-hc0a3c3a_7.conda#53ebd4c833fa01cb2c6353e99f905406
-https://conda.anaconda.org/conda-forge/noarch/tzdata-2024a-h0c530f3_0.conda#161081fc7cec0bfda0d86d7cb595f8d8
-https://conda.anaconda.org/conda-forge/linux-64/libgomp-13.2.0-h77fa898_7.conda#abf3fec87c2563697defa759dec3d639
+https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2025.1.31-hbcca054_0.conda#19f3a56f68d2fd06c516076bff482c52
+https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.43-h712a8e2_3.conda#5d5839b8df5d356d701bdd3450af6955
+https://conda.anaconda.org/conda-forge/linux-64/python_abi-3.13-5_cp313.conda#381bbd2a92c863f640a55b6ff3c35161
+https://conda.anaconda.org/conda-forge/noarch/tzdata-2025a-h78e105d_0.conda#dbcace4706afdfb7eb891f7b37d07c04
+https://conda.anaconda.org/conda-forge/linux-64/libgomp-14.2.0-h77fa898_1.conda#cc3573974587f12dda90d96e3e55a702
 https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#73aaf86a425cc6e73fcf236a5a46396d
-https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-13.2.0-h77fa898_7.conda#72ec1b1b04c4d15d4204ece1ecea5978
-https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hd590300_5.conda#69b8b6202a07720f448be700e300ccf4
-https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.28.1-hd590300_0.conda#dcde58ff9a1f30b0037a2315d1846d1f
-https://conda.anaconda.org/conda-forge/linux-64/icu-70.1-h27087fc_0.tar.bz2#87473a15119779e021c314249d4b4aed
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-14.2.0-h77fa898_1.conda#3cb76c3f10d3bc7f1105b2fc9db984df
+https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.34.4-hb9d3cd8_0.conda#e2775acf57efd5af15b8e3d1d74d72d3
+https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.6.4-h5888daf_0.conda#db833e03127376d461e1e13e76f09b6c
+https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.6-h2dba641_0.conda#e3eb7806380bc8bcecba6d749ad5f026
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-14.2.0-h69a702a_1.conda#e39480b9ca41323497b05492a63bc35b
+https://conda.anaconda.org/conda-forge/linux-64/libiconv-1.18-h4ce23a2_0.conda#0743bcd51fc4e6e0367e0aaf41e9bebc
+https://conda.anaconda.org/conda-forge/linux-64/liblzma-5.6.4-hb9d3cd8_0.conda#42d5b6a0f30d3c10cd88cb8584fda1cb
+https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-14.2.0-hc0a3c3a_1.conda#234a5554c53625688d51062645337328
+https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.3.1-hb9d3cd8_2.conda#edb0dca6bc32e4f4789199455a1dbeb8
+https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-h2d0b736_3.conda#47e340acb35de30501a76c7c799c41d7
+https://conda.anaconda.org/conda-forge/linux-64/openssl-3.4.1-h7b32b05_0.conda#41adf927e746dc75ecf0ef841c454e48
+https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-h4bc722e_7.conda#62ee74e96c5ebb0af99386de58cf9553
 https://conda.anaconda.org/conda-forge/linux-64/keyutils-1.6.1-h166bdaf_0.tar.bz2#30186d27e2c9fa62b45fb1476b7200e3
+https://conda.anaconda.org/conda-forge/linux-64/libedit-3.1.20250104-pl5321h7949ede_0.conda#c277e0a4d549b03ac1e9d6cbbe3d017b
 https://conda.anaconda.org/conda-forge/linux-64/libev-4.33-hd590300_2.conda#172bf1cd1ff8629f2b1179945ed45055
-https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.6.2-h59595ed_0.conda#e7ba12deb7020dd080c6c70e7b6f6a3d
-https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.2-h7f98852_5.tar.bz2#d645c6d2ac96843a2bfaccd2d62b3ac3
-https://conda.anaconda.org/conda-forge/linux-64/libiconv-1.17-hd590300_2.conda#d66573916ffcf376178462f1b61c941e
-https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.1-hd590300_0.conda#30fd6e37fe21f86f4bd26d6ee73eeec7
+https://conda.anaconda.org/conda-forge/linux-64/libmpdec-4.0.0-h4bc722e_0.conda#aeb98fdeb2e8f25d43ef71fbacbeec80
+https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.49.1-hee588c1_1.conda#73cea06049cc4174578b432320a003b8
+https://conda.anaconda.org/conda-forge/linux-64/libssh2-1.11.1-hf672d98_0.conda#be2de152d8073ef1c01b7728475f2fe7
+https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-14.2.0-h4852527_1.conda#8371ac6457591af2cf6159439c1fd051
 https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.38.1-h0b41bf4_0.conda#40b61aab5c7ba9ff276c41cfffe6b80b
 https://conda.anaconda.org/conda-forge/linux-64/libxcrypt-4.4.36-hd590300_1.conda#5aa797f8787fe7a17d1b0821485b5adc
-https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.2.13-h4ab18f5_6.conda#27329162c0dc732bcf67a4e0cd488125
-https://conda.anaconda.org/bioconda/linux-64/ncbi-vdb-3.1.1-h4ac6f70_0.tar.bz2#4cbc542ee7db0710bdf07a4e55f5daaf
-https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-h59595ed_0.conda#fcea371545eda051b6deafb24889fc69
-https://conda.anaconda.org/conda-forge/linux-64/openssl-3.3.0-h4ab18f5_3.conda#12ea6d0d4ed54530eaed18e4835c1f7c
-https://conda.anaconda.org/conda-forge/linux-64/ossuuid-1.6.2-hf484d3e_1000.tar.bz2#0ca24876ead80a9290d3936aea5fefb1
-https://conda.anaconda.org/conda-forge/linux-64/xz-5.2.6-h166bdaf_0.tar.bz2#2161070d867d1b1204ea749c8eec4ef0
-https://conda.anaconda.org/conda-forge/linux-64/libedit-3.1.20191231-he28a2e2_2.tar.bz2#4d331e44109e3f0e19b4cb8f9b82f3e1
-https://conda.anaconda.org/conda-forge/linux-64/libnghttp2-1.58.0-h47da74e_1.conda#700ac6ea6d53d5510591c4344d5c989a
-https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.45.3-h2797004_0.conda#b3316cbe90249da4f8e84cd66e1cc55b
-https://conda.anaconda.org/conda-forge/linux-64/libssh2-1.11.0-h0841786_0.conda#1f5a58e686b13bcfde88b93f547d23fe
-https://conda.anaconda.org/conda-forge/linux-64/libxml2-2.9.14-h22db469_4.tar.bz2#aced7c1f4b4dbfea08e033c6ae97c53e
-https://conda.anaconda.org/conda-forge/linux-64/pbzip2-1.1.13-h1fcc475_2.conda#e1bf3c0868789f3ddf5d1aeb47bc60a6
-https://conda.anaconda.org/conda-forge/linux-64/perl-5.32.1-7_hd590300_perl5.conda#f2cfec9406850991f4e3d960cc9e3321
-https://conda.anaconda.org/conda-forge/linux-64/pigz-2.8-h2797004_0.conda#1832561770273ca7cf52b989dd83e6c3
+https://conda.anaconda.org/bioconda/linux-64/ncbi-vdb-3.2.0-h9948957_0.tar.bz2#8f8905dfc76520846c386c84ba8489dd
+https://conda.anaconda.org/conda-forge/linux-64/ossuuid-1.6.2-h5888daf_1001.conda#6cc16cf6cd2fd0b22844735f52468a98
+https://conda.anaconda.org/conda-forge/linux-64/pigz-2.8-hadc24fc_1.conda#b7f0995c7c10a80015668a62f2b608e7
 https://conda.anaconda.org/conda-forge/linux-64/readline-8.2-h8228510_1.conda#47d31b792659ce70f470b5c82fdfb7a4
 https://conda.anaconda.org/conda-forge/linux-64/tk-8.6.13-noxft_h4845f30_101.conda#d453b98d9c83e71da0741bb0ff4d76bc
-https://conda.anaconda.org/conda-forge/linux-64/zlib-1.2.13-h4ab18f5_6.conda#559d338a4234c2ad6e676f460a093e67
-https://conda.anaconda.org/conda-forge/linux-64/zstd-1.5.6-ha6fb4c9_0.conda#4d056880988120e29d75bfff282e0f45
-https://conda.anaconda.org/conda-forge/linux-64/krb5-1.21.2-h659d440_0.conda#cd95826dbd331ed1be26bdf401432844
+https://conda.anaconda.org/conda-forge/linux-64/zlib-1.3.1-hb9d3cd8_2.conda#c9f075ab2f33b3bbee9e62d4ad0a6cd8
+https://conda.anaconda.org/conda-forge/linux-64/zstd-1.5.7-hb8e6e7a_0.conda#3fe5420e4da42d8110c28f21de6cc127
+https://conda.anaconda.org/conda-forge/linux-64/icu-75.1-he02047a_0.conda#8b189310083baabfb622af68fd9d3ae3
+https://conda.anaconda.org/conda-forge/linux-64/krb5-1.21.3-h659f571_0.conda#3f43953b7d3fb3aaa1d0d0723d91e368
+https://conda.anaconda.org/conda-forge/linux-64/libnghttp2-1.64.0-h161d5f1_0.conda#19e57602824042dfd0446292ef90488b
+https://conda.anaconda.org/conda-forge/linux-64/pbzip2-1.1.13-h1fcc475_2.conda#e1bf3c0868789f3ddf5d1aeb47bc60a6
+https://conda.anaconda.org/conda-forge/linux-64/perl-5.32.1-7_hd590300_perl5.conda#f2cfec9406850991f4e3d960cc9e3321
+https://conda.anaconda.org/conda-forge/linux-64/python-3.13.2-hf636f53_101_cp313.conda#a7902a3611fe773da3921cbbf7bc2c5c
+https://conda.anaconda.org/conda-forge/linux-64/libcurl-8.12.1-h332b0f4_0.conda#45e9dc4e7b25e2841deb392be085500e
+https://conda.anaconda.org/conda-forge/linux-64/libxml2-2.13.6-h8d12d68_0.conda#328382c0e0ca648e5c189d5ec336c604
 https://conda.anaconda.org/conda-forge/linux-64/perl-capture-tiny-0.48-pl5321ha770c72_1.tar.bz2#4859b3d284090166394875e68184dc9c
 https://conda.anaconda.org/conda-forge/noarch/perl-constant-1.33-pl5321hd8ed1ab_0.tar.bz2#7f9fc9cfa08a3fe36ffcff820c65c3ac
 https://conda.anaconda.org/conda-forge/noarch/perl-exporter-5.74-pl5321hd8ed1ab_0.tar.bz2#fd2eac4e35f8c970870a3961c1df3e29
@@ -47,34 +53,30 @@ https://conda.anaconda.org/conda-forge/noarch/perl-extutils-makemaker-7.70-pl532
 https://conda.anaconda.org/bioconda/noarch/perl-ffi-checklib-0.28-pl5321hdfd78af_0.tar.bz2#05451eeb5e82ccf46831248c55c6218a
 https://conda.anaconda.org/conda-forge/noarch/perl-file-which-1.24-pl5321hd8ed1ab_0.tar.bz2#94e5b2c9d56ef7c4c70ddf51ac38ae3d
 https://conda.anaconda.org/conda-forge/noarch/perl-importer-0.026-pl5321hd8ed1ab_0.tar.bz2#66e17c342d13c39a12c1059f13f9b72c
-https://conda.anaconda.org/conda-forge/noarch/perl-parent-0.241-pl5321hd8ed1ab_0.conda#44ab631ed23c25c224ed4c849d713aac
+https://conda.anaconda.org/conda-forge/noarch/perl-parent-0.243-pl5321hd8ed1ab_0.conda#314caa3b72d65f8078d426c6721dcacc
 https://conda.anaconda.org/conda-forge/noarch/perl-path-tiny-0.124-pl5321hd8ed1ab_0.tar.bz2#456a8757a2e5272fb1dcb6435e037f3a
 https://conda.anaconda.org/conda-forge/noarch/perl-scope-guard-0.21-pl5321hd8ed1ab_0.tar.bz2#daea4e61dfdf06fef9a51dce492508f4
 https://conda.anaconda.org/conda-forge/linux-64/perl-test-warnings-0.031-pl5321ha770c72_0.conda#db0eb51272ea7af7213afaaf7e9967c3
 https://conda.anaconda.org/conda-forge/linux-64/perl-try-tiny-0.31-pl5321ha770c72_0.tar.bz2#cc23b14ed56bf51d84832d98ebd156af
 https://conda.anaconda.org/conda-forge/noarch/perl-xml-sax-base-1.09-pl5321hd8ed1ab_0.tar.bz2#a4d9b02cd61c478c9cb58064307a1414
-https://conda.anaconda.org/conda-forge/linux-64/python-3.12.3-hab00c5b_0_cpython.conda#2540b74d304f71d3e89c81209db4db84
-https://conda.anaconda.org/conda-forge/linux-64/libcurl-8.8.0-hca28451_0.conda#f21c27f076a07907e70c49bb57bd0f20
+https://conda.anaconda.org/conda-forge/noarch/pip-25.0.1-pyh145f28c_0.conda#9ba21d75dc722c29827988a575a65707
+https://conda.anaconda.org/bioconda/noarch/snakemake-wrapper-utils-0.6.2-pyhdfd78af_0.tar.bz2#fd8759bbd04116eace828c4fab906096
+https://conda.anaconda.org/conda-forge/linux-64/curl-8.12.1-h332b0f4_0.conda#2c36813e99b680af6c47b6cc19feca7b
 https://conda.anaconda.org/conda-forge/noarch/perl-carp-1.50-pl5321hd8ed1ab_0.tar.bz2#bdddc03e28019b902da71b722f2288d7
 https://conda.anaconda.org/conda-forge/noarch/perl-file-path-2.18-pl5321hd8ed1ab_0.tar.bz2#e13e456f61b8261ba074c0aa93086afe
 https://conda.anaconda.org/conda-forge/linux-64/perl-test-fatal-0.016-pl5321ha770c72_0.tar.bz2#5c397b1fd3095004f4ff149af1c0dd3c
 https://conda.anaconda.org/conda-forge/noarch/perl-xml-namespacesupport-1.12-pl5321hd8ed1ab_0.tar.bz2#f4ce684ba66b3228bfffb09892235930
-https://conda.anaconda.org/conda-forge/noarch/setuptools-70.0.0-pyhd8ed1ab_0.conda#c8ddb4f34a208df4dd42509a0f6a1c89
-https://conda.anaconda.org/bioconda/noarch/snakemake-wrapper-utils-0.6.2-pyhdfd78af_0.tar.bz2#fd8759bbd04116eace828c4fab906096
-https://conda.anaconda.org/conda-forge/noarch/wheel-0.43.0-pyhd8ed1ab_1.conda#0b5293a157c2b5cd513dd1b03d8d3aae
-https://conda.anaconda.org/conda-forge/linux-64/curl-8.8.0-he654da7_0.conda#042341d8b9ba4ee7f2722b81fae9f0ad
 https://conda.anaconda.org/conda-forge/noarch/perl-business-isbn-data-20210112.006-pl5321hd8ed1ab_0.tar.bz2#a70f08650ec3919ee5e599834f1349d3
 https://conda.anaconda.org/conda-forge/noarch/perl-file-temp-0.2304-pl5321hd8ed1ab_0.tar.bz2#0a039c4fc36748942287ee10d0431515
-https://conda.anaconda.org/conda-forge/linux-64/perl-pathtools-3.75-pl5321h166bdaf_0.tar.bz2#4e72abd06ec15cb28c14798dab2c10c8
+https://conda.anaconda.org/conda-forge/linux-64/perl-pathtools-3.75-pl5321hb9d3cd8_1.conda#f45662d4b9e9f16aef30702e463a9299
 https://conda.anaconda.org/conda-forge/noarch/perl-sub-info-0.002-pl5321hd8ed1ab_0.tar.bz2#5b48dcf7df9e4e01d45de2c1f494d830
-https://conda.anaconda.org/bioconda/noarch/perl-term-table-0.016-pl5321hdfd78af_0.tar.bz2#91a4c19686c0e1c8b34325664bd3eee4
-https://conda.anaconda.org/conda-forge/noarch/pip-24.0-pyhd8ed1ab_0.conda#f586ac1e56c8638b64f9c8122a7b8a67
+https://conda.anaconda.org/bioconda/noarch/perl-term-table-0.024-pl5321hdfd78af_0.tar.bz2#a1a7fa5cdba18a5409274e7b40f59c4f
 https://conda.anaconda.org/conda-forge/noarch/perl-business-isbn-3.007-pl5321hd8ed1ab_0.tar.bz2#a7a3d7614e1a73b8d9c20030651d6006
 https://conda.anaconda.org/conda-forge/noarch/perl-file-chdir-0.1011-pl5321hd8ed1ab_0.tar.bz2#c057570093f9298e9c5e4391877f2301
-https://conda.anaconda.org/bioconda/noarch/perl-test2-suite-0.000145-pl5321hdfd78af_0.tar.bz2#c07db9debdb82d45be8a2115f5eb952d
+https://conda.anaconda.org/bioconda/noarch/perl-test2-suite-0.000163-pl5321hdfd78af_0.tar.bz2#6a29ce25ffd66ecc495a62a77a4dc0c2
 https://conda.anaconda.org/conda-forge/noarch/perl-xml-sax-1.02-pl5321hd8ed1ab_0.tar.bz2#3e3fac6ffef3fcda271b5511aecacaa8
-https://conda.anaconda.org/bioconda/linux-64/perl-alien-build-2.48-pl5321hec16e2b_0.tar.bz2#8b1ea03a11ce6b27945962c47013f93e
+https://conda.anaconda.org/bioconda/linux-64/perl-alien-build-2.84-pl5321h7b50bb2_0.tar.bz2#e3609e4dbc445dd5d1d40a22a527f24a
 https://conda.anaconda.org/conda-forge/linux-64/perl-uri-5.17-pl5321ha770c72_0.conda#847c007d5f4a59b356a9cd577010b89c
-https://conda.anaconda.org/bioconda/linux-64/perl-alien-libxml2-0.17-pl5321hec16e2b_0.tar.bz2#4628ba7447031d6e4661732a2e7bdc64
-https://conda.anaconda.org/bioconda/linux-64/perl-xml-libxml-2.0207-pl5321h661654b_0.tar.bz2#1ce8ba66c656dbe547110201b1456797
-https://conda.anaconda.org/bioconda/linux-64/sra-tools-3.1.1-h4304569_0.tar.bz2#0abefb12a2345d4c74c0516800f8dbc2
+https://conda.anaconda.org/bioconda/linux-64/perl-alien-libxml2-0.17-pl5321h577a1d6_1.tar.bz2#f89f1fd0808f00264371a41186abbcef
+https://conda.anaconda.org/bioconda/linux-64/perl-xml-libxml-2.0210-pl5321hf886d80_0.tar.bz2#ee29e9d7e2f57fa48b6da8ea82ab9e61
+https://conda.anaconda.org/bioconda/linux-64/sra-tools-3.2.0-h4304569_0.tar.bz2#6070b41c12cdf6148c7f6e35f4bface9
diff --git a/bio/sra-tools/fasterq-dump/environment.yaml b/bio/sra-tools/fasterq-dump/environment.yaml
index ab01e94b4ce..9fe6265641e 100644
--- a/bio/sra-tools/fasterq-dump/environment.yaml
+++ b/bio/sra-tools/fasterq-dump/environment.yaml
@@ -3,7 +3,7 @@ channels:
   - bioconda
   - nodefaults
 dependencies:
-  - sra-tools =3.1.1
+  - sra-tools =3.2.0
   - pigz =2.8
   - pbzip2 =1.1.13
   - snakemake-wrapper-utils =0.6.2