From 8331c344a522efac6d35e9c96c7ee2a362938238 Mon Sep 17 00:00:00 2001
From: Snoopy Crime Cop <snoopycrimecop@gmail.com>
Date: Tue, 3 Oct 2023 23:05:08 +0000
Subject: [PATCH] merge master -Dnone -Ihotfix -Ssuccess-only

Repository: openmicroscopy/bioformats
Excluded PRs:
  - PR 4099 melissalinkert 'TIFF: check IFD entry offset before seeking' (user: melissalinkert)
  - PR 4097 melissalinkert 'DICOM writer: throw an exception if the provided tiles don't match the expected tile size' (user: melissalinkert)
  - PR 4092 NicoKiaru 'Commits an alternative Zeiss CZI Reader' (user: NicoKiaru)
  - PR 4090 CGDogan 'Throw error when cannot load library' (user: CGDogan)
  - PR 4085 melissalinkert 'CV7000 improvements' (user: melissalinkert)
  - PR 4081 melissalinkert 'SVS: fix a variety of small issues' (user: melissalinkert)
  - PR 4076 melissalinkert 'VSI: fix uncompressed BGR data' (user: melissalinkert)
  - PR 4075 melissalinkert 'Photoshop TIFF: fix plane reading with memoization' (user: melissalinkert)
  - PR 4073 melissalinkert 'OME-TIFF: optionally fail fast if an invalid file is encountered' (user: melissalinkert)
  - PR 4072 melissalinkert 'Ventana: fix tile arithmetic for smallest resolutions' (user: melissalinkert)
  - PR 4061 CGDogan 'Don't fail on non-4:4:4 JPEG' (user: CGDogan)
  - PR 4059 CGDogan 'TiffSaver: produce valid 4-channel RGBA images' (user: CGDogan)
  - PR 4057 melissalinkert 'Add CodecOptions.disableChromaSubsampling' (user: melissalinkert)
  - PR 4051 CGDogan 'fix aplreader throwing nullptrexception' (user: CGDogan)
  - PR 4016 melissalinkert 'Add API and DICOM-specific implementations for providing supplemental metadata during conversion' (user: melissalinkert)
  - PR 4000 XLEFReaderForBioformats 'Reworking LMSMetadata package and adding a new lif reader' (user: XLEFReaderForBioformats)
  - PR 3992 melissalinkert 'Allow reading and writing compressed tiles' (user: melissalinkert)
  - PR 3956 sbesson 'Bump sl4j-api to 2.x' (user: sbesson)
  - PR 3939 dgault 'ImagePlusReader: handle IndexColorModel' (user: dgault)
  - PR 3902 melissalinkert 'LSID validation' (user: melissalinkert)
  - PR 3898 melissalinkert 'InCell 1000/2000 field count and plane metadata fixes' (user: melissalinkert)
  - PR 3872 arvequina 'New codec integration Jetraw' (user: arvequina)
  - PR 3794 dgault 'Chunk API: Add new API and functionality for reading and writing chunks' (user: dgault)
  - PR 3680 iwbh15 'Performance increase in writeIFD' (user: iwbh15)
  - PR 3618 dgault 'Memoizer: Persist caching to sub readers' (user: dgault)
Updating bc1fcdd..1067aec
Previously merged:
  - PR 4088 melissalinkert 'CZI: unify channel color parsing'
  - PR 4083 melissalinkert 'NDPI: correct for potential integer overflow in stored restart marker tag'
  - PR 4074 melissalinkert 'Gel: check IFD count in isThisType'
  - PR 4078 melissalinkert 'OIR: fix off-by-one in XML block reading'
  - PR 4077 melissalinkert 'TillVision: fix some metadata parsing and .pst detection issues'
  - PR 4080 melissalinkert 'Exporter plugin: remove any extra Channel elements'
  - PR 4071 melissalinkert 'IVision: improve version and data type checks in isThisType'
  - PR 4094 sbesson 'File header update'
  - PR 4070 melissalinkert 'Gatan DM3: be more defensive in parsing acquisition mode'
  - PR 4098 melissalinkert 'TIFF: throw exception on 64-bit int data'

Generated by BIOFORMATS-push#1591 (https://latest-ci.openmicroscopy.org/jenkins/job/BIOFORMATS-push/1591/)