From 156e9184170f550def8ccd1cb1cf89f176c7072d Mon Sep 17 00:00:00 2001
From: SKernchen <sophie.kernchen@web.de>
Date: Mon, 4 Mar 2024 01:25:15 +0100
Subject: [PATCH] Adds a bit more structure, but still needs data (structures)

---
 src/hermes/commands/deposit/base.py    | 18 +++++++++++++-----
 src/hermes/commands/deposit/invenio.py | 10 +++++-----
 src/hermes/commands/process/base.py    | 11 ++++++++++-
 3 files changed, 28 insertions(+), 11 deletions(-)

diff --git a/src/hermes/commands/deposit/base.py b/src/hermes/commands/deposit/base.py
index dfbb7e3a..bdcb82ee 100644
--- a/src/hermes/commands/deposit/base.py
+++ b/src/hermes/commands/deposit/base.py
@@ -8,11 +8,9 @@
 import abc
 import argparse
 
-import click
 from pydantic import BaseModel
 
 from hermes.commands.base import HermesCommand, HermesPlugin
-from hermes.model.context import CodeMetaContext
 
 
 class BaseDepositPlugin(HermesPlugin):
@@ -21,8 +19,7 @@ class BaseDepositPlugin(HermesPlugin):
     TODO: describe workflow... needs refactoring to be less stateful!
     """
 
-    def __init__(self, click_ctx: click.Context, ctx: CodeMetaContext) -> None:
-        self.click_ctx = click_ctx
+    def __init__(self, ctx):
         self.ctx = ctx
 
     def __call__(self, command: HermesCommand) -> None:
@@ -110,4 +107,15 @@ class HermesDepositCommand(HermesCommand):
     settings_class = DepositSettings
 
     def __call__(self, args: argparse.Namespace) -> None:
-        pass
+        self.args = args
+        plugin_name = self.settings.target
+        '''try:
+            plugin_func = self.plugins[plugin_name](ctx)
+            deposited_data = plugin_func(self)
+
+
+        except KeyError:
+            self.log.error("Plugin '%s' not found.", plugin_name)
+
+        except HermesValidationError as e:
+            self.log.error("Error while executing %s: %s", plugin_name, e)'''
diff --git a/src/hermes/commands/deposit/invenio.py b/src/hermes/commands/deposit/invenio.py
index f9a14938..c11194b8 100644
--- a/src/hermes/commands/deposit/invenio.py
+++ b/src/hermes/commands/deposit/invenio.py
@@ -252,14 +252,14 @@ class InvenioDepositPlugin(BaseDepositPlugin):
     invenio_resolver_class = InvenioResolver
     settings_class = InvenioDepositSettings
 
-    def __init__(self, click_ctx: click.Context, ctx: CodeMetaContext, client=None, resolver=None) -> None:
-        super().__init__(click_ctx, ctx)
+    def __init__(self, ctx: CodeMetaContext, client=None, resolver=None) -> None:
+        super().__init__(ctx)
 
         self.invenio_context_path = ContextPath.parse(f"deposit.{self.platform_name}")
         self.invenio_ctx = None
 
         if client is None:
-            auth_token = self.click_ctx.params.get("auth_token")
+            auth_token = self.ctx.params.get("auth_token")
             if auth_token is None:
                 raise DepositionUnauthorizedError("No auth token given for deposition platform")
             self.client = self.invenio_client_class(auth_token=auth_token, platform_name=self.platform_name)
@@ -334,7 +334,7 @@ def is_initial_publication(self) -> bool:
     def create_initial_version(self) -> None:
         """Create an initial version of a publication."""
 
-        if not self.click_ctx.params['initial']:
+        if not self.ctx.params['initial']:
             raise RuntimeError("Please use `--initial` to make an initial deposition.")
 
         response = self.client.new_deposit()
@@ -412,7 +412,7 @@ def upload_artifacts(self) -> None:
 
         bucket_url = self.links["bucket"]
 
-        files: list[click.Path] = self.click_ctx.params["file"]
+        files: list[click.Path] = self.ctx.params["file"]
         for path_arg in files:
             path = Path(path_arg)
 
diff --git a/src/hermes/commands/process/base.py b/src/hermes/commands/process/base.py
index 3aabb37f..37e4009e 100644
--- a/src/hermes/commands/process/base.py
+++ b/src/hermes/commands/process/base.py
@@ -6,7 +6,11 @@
 
 import argparse
 
+from pydantic import BaseModel
+
 from hermes.commands.base import HermesCommand, HermesPlugin
+from hermes.model.errors import HermesValidationError
+from hermes.model.context import HermesContext, CodeMetaContext
 
 
 class HermesProcessPlugin(HermesPlugin):
@@ -17,6 +21,11 @@ class HermesProcessCommand(HermesCommand):
     """ Process the collected metadata into a common dataset. """
 
     command_name = "process"
+    settings_class = None
 
     def __call__(self, args: argparse.Namespace) -> None:
-        pass
+        self.args = args
+        # TODO: get harvested data
+        # TODO: Merge Datasets
+
+