diff --git a/.github/workflows/docker.yml b/.github/workflows/docker.yml index 059744f0..4f97ec32 100644 --- a/.github/workflows/docker.yml +++ b/.github/workflows/docker.yml @@ -7,7 +7,7 @@ on: description: 'ColabFold Conda version' required: true type: string - default: '1.5.4' + default: '1.5.5' env: REGISTRY: ghcr.io diff --git a/AlphaFold2.ipynb b/AlphaFold2.ipynb index 7234afc4..ff37ebdc 100644 --- a/AlphaFold2.ipynb +++ b/AlphaFold2.ipynb @@ -46,7 +46,7 @@ "source": [ "\n", "\n", - "##ColabFold v1.5.4: AlphaFold2 using MMseqs2\n", + "##ColabFold v1.5.5: AlphaFold2 using MMseqs2\n", "\n", "Easy to use protein structure and complex prediction using [AlphaFold2](https://www.nature.com/articles/s41586-021-03819-2) and [Alphafold2-multimer](https://www.biorxiv.org/content/10.1101/2021.10.04.463034v1). Sequence alignments/templates are generated through [MMseqs2](mmseqs.com) and [HHsearch](https://github.com/soedinglab/hh-suite). For more details, see bottom of the notebook, checkout the [ColabFold GitHub](https://github.com/sokrypton/ColabFold) and read our manuscript.\n", "Old versions: [v1.4](https://colab.research.google.com/github/sokrypton/ColabFold/blob/v1.4.0/AlphaFold2.ipynb), [v1.5.1](https://colab.research.google.com/github/sokrypton/ColabFold/blob/v1.5.1/AlphaFold2.ipynb), [v1.5.2](https://colab.research.google.com/github/sokrypton/ColabFold/blob/v1.5.2/AlphaFold2.ipynb), [v1.5.3-patch](https://colab.research.google.com/github/sokrypton/ColabFold/blob/56c72044c7d51a311ca99b953a71e552fdc042e1/AlphaFold2.ipynb)\n", diff --git a/Dockerfile b/Dockerfile index 1bf3a71b..20ff7c18 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,5 +1,5 @@ ARG CUDA_VERSION=11.8.0 -ARG COLABFOLD_VERSION=1.5.4 +ARG COLABFOLD_VERSION=1.5.5 FROM nvidia/cuda:${CUDA_VERSION}-base-ubuntu22.04 RUN apt-get update && apt-get install -y wget cuda-nvcc-$(echo $CUDA_VERSION | cut -d'.' -f1,2 | tr '.' '-') --no-install-recommends --no-install-suggests && rm -rf /var/lib/apt/lists/* && \ diff --git a/README.md b/README.md index a90a51f3..eb478f11 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,4 @@ -# ColabFold - v1.5.4 +# ColabFold - v1.5.5 For details of what was changed in v1.5, see [change log](https://github.com/sokrypton/ColabFold/wiki/v1.5.0)! diff --git a/batch/AlphaFold2_batch.ipynb b/batch/AlphaFold2_batch.ipynb index 94f1dc65..aefc6aae 100644 --- a/batch/AlphaFold2_batch.ipynb +++ b/batch/AlphaFold2_batch.ipynb @@ -34,7 +34,7 @@ "id": "G4yBrceuFbf3" }, "source": [ - "#ColabFold v1.5.4: AlphaFold2 w/ MMseqs2 BATCH\n", + "#ColabFold v1.5.5: AlphaFold2 w/ MMseqs2 BATCH\n", "\n", "\n", "\n", diff --git a/pyproject.toml b/pyproject.toml index 684e7fa9..de9f10a9 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "colabfold" -version = "1.5.4" +version = "1.5.5" description = "Making protein folding accessible to all. Predict proteins structures both in google colab and on your machine" authors = [ "Milot Mirdita ",