Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Accession in phenotype download for trial replaced by crossids #5293

Closed
ch728 opened this issue Feb 2, 2025 · 4 comments
Closed

Accession in phenotype download for trial replaced by crossids #5293

ch728 opened this issue Feb 2, 2025 · 4 comments
Assignees

Comments

@ch728
Copy link

ch728 commented Feb 2, 2025

When I download phenotypes for a trial some of the germplasm names are replaced by cross ids, but not all of them that are in crosses. See attached phenotypic download and crossing trial download. This behavior doesn't make sense to me.

24AcHC_phenotypes.csv

24AcHCX_layout.xlsx

@titima15
Copy link
Contributor

titima15 commented Feb 3, 2025

Do you have both accessions and cross unique ids in that trial? For trial using cross unique ids, you can have accessions as controls.

@titima15 titima15 self-assigned this Feb 3, 2025
@ch728
Copy link
Author

ch728 commented Feb 3, 2025

The trial was created only with accessions. Once we added a crossing trial that used plants from the trial as parents the plant names were replaced with cross ids. The accession name (germplasm name) was changed, which seems like a bug to me.

@titima15
Copy link
Contributor

titima15 commented Feb 3, 2025

@ch728 I will check the query.

@titima15
Copy link
Contributor

titima15 commented Feb 4, 2025

Done via #5297

@titima15 titima15 closed this as completed Feb 4, 2025
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants