[BUG] jake ddt fails with ValueError: invalid literal for int() with base 10: 'noinfo' - both v2.1.1 and v3 #132

DavidGietka-NOAA · 2023-03-13T18:48:19Z

Hello,
Describe the bug
I am unable to run conda list | jake ddt because of the error below. I tried both with pip install and conda install -c conda-forge jake and jake=2.1.1 They all fail with the same error.
Traceback (most recent call last):
File "/ngs/projects/binaries/anaconda3/envs/basesec/bin/jake", line 10, in
sys.exit(main())
File "/ngs/projects/binaries/anaconda3/envs/basesec/lib/python3.8/site-packages/jake/app.py", line 122, in main
JakeCmd(args).execute()
File "/ngs/projects/binaries/anaconda3/envs/basesec/lib/python3.8/site-packages/jake/app.py", line 96, in execute
exit_code: int = command.execute(arguments=self._arguments)
File "/ngs/projects/binaries/anaconda3/envs/basesec/lib/python3.8/site-packages/jake/command/init.py", line 43, in execute
return self.handle_args()
File "/ngs/projects/binaries/anaconda3/envs/basesec/lib/python3.8/site-packages/jake/command/oss.py", line 170, in handle_args
cwes=[int(oic_vulnerability.cwe[4:])] if oic_vulnerability.cwe else None,
ValueError: invalid literal for int() with base 10: 'noinfo'

To Reproduce
Steps to reproduce the behavior:
conda list | jake ddt

Expected behavior
A report of vulnerabilities

Screenshots
No further information on screen besides traceback.
Desktop (please complete the following information):

OS: RHEL7
Python Version: 3.8.13
Version Jake version 2.1.1 (also tried with 3.0.0)

Additional context
None.

Thanks for your assistance. Please let me know if you need more information.

madpah · 2023-03-16T17:21:05Z

Hi @DavidGietka-NOAA - thanks for taking the time to report and issue with jake!

To provide a little more context, are you able to share the output of your specific conda list command so we can look to reproduce this issue?

Thanks in advance!

madpah · 2023-03-16T17:39:26Z

Same as #128...?

DavidGietka-NOAA · 2023-03-16T17:48:16Z

Hello,
Here is the output of conda list. Thanks.

(basesec) [root@ngs-awu-tsapp envs]# conda list
# packages in environment at /ngs/projects/binaries/anaconda3/envs/basesec:
#
# Name                    Version                   Build  Channel
_anaconda_depends         2022.10                  py38_2    https://repo.anaconda.cloud/repo/main
_ipyw_jlab_nb_ext_conf    0.1.0            py38h06a4308_1    https://repo.anaconda.cloud/repo/main
_libgcc_mutex             0.1                        main    https://repo.anaconda.cloud/repo/main
_openmp_mutex             5.1                       1_gnu    https://repo.anaconda.cloud/repo/main
alabaster                 0.7.12             pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
anaconda                  custom                   py38_1    https://repo.anaconda.cloud/repo/main
anaconda-client           1.11.0           py38h06a4308_0    https://repo.anaconda.cloud/repo/main
anaconda-navigator        2.3.2            py38h06a4308_0    https://repo.anaconda.cloud/repo/main
anaconda-project          0.11.1           py38h06a4308_0    https://repo.anaconda.cloud/repo/main
anyio                     3.5.0            py38h06a4308_0    https://repo.anaconda.cloud/repo/main
appdirs                   1.4.4              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
argon2-cffi               21.3.0             pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
argon2-cffi-bindings      21.2.0           py38h7f8727e_0    https://repo.anaconda.cloud/repo/main
arrow                     1.2.2              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
astroid                   2.11.7           py38h06a4308_0    https://repo.anaconda.cloud/repo/main
astropy                   5.1              py38h7deecbd_0    https://repo.anaconda.cloud/repo/main
atomicwrites              1.4.0                      py_0    https://repo.anaconda.cloud/repo/main
attrs                     21.4.0             pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
automat                   20.2.0                     py_0    https://repo.anaconda.cloud/repo/main
autopep8                  1.6.0              pyhd3eb1b0_1    https://repo.anaconda.cloud/repo/main
awscli                    1.20.4                   pypi_0    pypi
babel                     2.9.1              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
backcall                  0.2.0              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
backports                 1.1                pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
backports.functools_lru_cache 1.6.4              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
backports.tempfile        1.0                pyhd3eb1b0_1    https://repo.anaconda.cloud/repo/main
backports.weakref         1.0.post1                  py_1    https://repo.anaconda.cloud/repo/main
bcrypt                    3.2.0            py38h5eee18b_1    https://repo.anaconda.cloud/repo/main
beautifulsoup4            4.11.1           py38h06a4308_0    https://repo.anaconda.cloud/repo/main
binaryornot               0.4.4              pyhd3eb1b0_1    https://repo.anaconda.cloud/repo/main
bitarray                  2.5.1            py38h5eee18b_0    https://repo.anaconda.cloud/repo/main
bkcharts                  0.2              py38h06a4308_1    https://repo.anaconda.cloud/repo/main
black                     22.6.0           py38h06a4308_0    https://repo.anaconda.cloud/repo/main
blas                      1.0                         mkl    https://repo.anaconda.cloud/repo/main
bleach                    4.1.0              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
blosc                     1.21.0               h4ff587b_1    https://repo.anaconda.cloud/repo/main
bokeh                     2.4.3            py38h06a4308_0    https://repo.anaconda.cloud/repo/main
boto3                     1.24.28          py38h06a4308_0    https://repo.anaconda.cloud/repo/main
botocore                  1.21.4                   pypi_0    pypi
bottleneck                1.3.5            py38h7deecbd_0    https://repo.anaconda.cloud/repo/main
branca                    0.6.0            py38h06a4308_0    https://repo.anaconda.cloud/repo/main
brotli                    1.0.9                h5eee18b_7    https://repo.anaconda.cloud/repo/main
brotli-bin                1.0.9                h5eee18b_7    https://repo.anaconda.cloud/repo/main
brotlipy                  0.7.0           py38h27cfd23_1003    https://repo.anaconda.cloud/repo/main
brunsli                   0.1                  h2531618_0    https://repo.anaconda.cloud/repo/main
bzip2                     1.0.8                h7b6447c_0    https://repo.anaconda.cloud/repo/main
c-ares                    1.18.1               h7f8727e_0    https://repo.anaconda.cloud/repo/main
ca-certificates           2022.12.7            ha878542_0    conda-forge
cairo                     1.16.0               h19f5f5c_2    https://repo.anaconda.cloud/repo/main
certifi                   2022.12.7          pyhd8ed1ab_0    conda-forge
cffi                      1.15.1           py38h74dc2b5_0    https://repo.anaconda.cloud/repo/main
cfitsio                   3.470                hf0d0db6_6    https://repo.anaconda.cloud/repo/main
chardet                   4.0.0           py38h06a4308_1003    https://repo.anaconda.cloud/repo/main
charls                    2.2.0                h2531618_0    https://repo.anaconda.cloud/repo/main
charset-normalizer        2.0.4              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
click                     8.0.4            py38h06a4308_0    https://repo.anaconda.cloud/repo/main
click-plugins             1.1.1              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
cligj                     0.7.2            py38h06a4308_0    https://repo.anaconda.cloud/repo/main
cloudpickle               2.0.0              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
clyent                    1.2.2                    py38_1    https://repo.anaconda.cloud/repo/main
colorama                  0.4.3                    pypi_0    pypi
colorcet                  3.0.0            py38h06a4308_0    https://repo.anaconda.cloud/repo/main
commonmark                0.9.1                      py_0    conda-forge
conda                     23.1.0           py38h06a4308_0    https://repo.anaconda.cloud/repo/main
conda-build               3.23.1           py38h06a4308_0    https://repo.anaconda.cloud/repo/main
conda-content-trust       0.1.3            py38h06a4308_0    https://repo.anaconda.cloud/repo/main
conda-env                 2.6.0                         1    https://repo.anaconda.cloud/repo/main
conda-pack                0.6.0              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
conda-package-handling    1.9.0            py38h5eee18b_1    https://repo.anaconda.cloud/repo/main
conda-repo-cli            1.0.24           py38h06a4308_0    https://repo.anaconda.cloud/repo/main
conda-token               0.4.0              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
conda-verify              3.4.2                      py_1    https://repo.anaconda.cloud/repo/main
constantly                15.1.0             pyh2b92418_0    https://repo.anaconda.cloud/repo/main
cookiecutter              1.7.3              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
cryptography              37.0.1           py38h9ce1e76_0    https://repo.anaconda.cloud/repo/main
cssselect                 1.1.0              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
curl                      7.84.0               h5eee18b_0    https://repo.anaconda.cloud/repo/main
cx-oracle                 8.1.0                    pypi_0    pypi
cycler                    0.11.0             pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
cyclonedx-bom             3.11.0             pyhd8ed1ab_0    conda-forge
cyclonedx-python-lib      3.1.5              pyhd8ed1ab_0    conda-forge
cython                    0.29.32          py38h6a678d5_0    https://repo.anaconda.cloud/repo/main
cytoolz                   0.11.0           py38h7b6447c_0    https://repo.anaconda.cloud/repo/main
daal4py                   2021.6.0         py38h79cecc1_1    https://repo.anaconda.cloud/repo/main
dal                       2021.6.0           hdb19cb5_916    https://repo.anaconda.cloud/repo/main
dask                      2022.7.0         py38h06a4308_0    https://repo.anaconda.cloud/repo/main
dask-core                 2022.7.0         py38h06a4308_0    https://repo.anaconda.cloud/repo/main
dataclasses               0.8                pyh6d0b6a4_7    https://repo.anaconda.cloud/repo/main
datashader                0.14.1           py38h06a4308_0    https://repo.anaconda.cloud/repo/main
datashape                 0.5.4            py38h06a4308_1    https://repo.anaconda.cloud/repo/main
dbus                      1.13.18              hb2f20db_0    https://repo.anaconda.cloud/repo/main
debugpy                   1.5.1            py38h295c915_0    https://repo.anaconda.cloud/repo/main
decorator                 5.1.1              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
defusedxml                0.7.1              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
diff-match-patch          20200713           pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
dill                      0.3.4              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
distributed               2022.7.0         py38h06a4308_0    https://repo.anaconda.cloud/repo/main
docutils                  0.15.2                   pypi_0    pypi
dparse                    0.6.2                    pypi_0    pypi
earthscope-cli            0.7.0                    pypi_0    pypi
earthscope-sdk            0.1.0                    pypi_0    pypi
entrypoints               0.4              py38h06a4308_0    https://repo.anaconda.cloud/repo/main
et_xmlfile                1.1.0            py38h06a4308_0    https://repo.anaconda.cloud/repo/main
expat                     2.4.9                h6a678d5_0    https://repo.anaconda.cloud/repo/main
filelock                  3.6.0              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
fiona                     1.8.22           py38h417a72b_0    https://repo.anaconda.cloud/repo/main
flake8                    4.0.1              pyhd3eb1b0_1    https://repo.anaconda.cloud/repo/main
flask                     1.1.2              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
folium                    0.14.0           py38h06a4308_0    https://repo.anaconda.cloud/repo/main
fontconfig                2.13.1               h6c09931_0    https://repo.anaconda.cloud/repo/main
fonttools                 4.25.0             pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
freetype                  2.11.0               h70c0345_0    https://repo.anaconda.cloud/repo/main
freexl                    1.0.6                h27cfd23_0    https://repo.anaconda.cloud/repo/main
fsspec                    2022.7.1         py38h06a4308_0    https://repo.anaconda.cloud/repo/main
future                    0.18.2                   py38_1    https://repo.anaconda.cloud/repo/main
gdal                      3.0.2            py38h40f10ac_3    https://repo.anaconda.cloud/repo/main
gensim                    4.1.2            py38h295c915_0    https://repo.anaconda.cloud/repo/main
geopandas                 0.12.2           py38h06a4308_0    https://repo.anaconda.cloud/repo/main
geopandas-base            0.12.2           py38h06a4308_0    https://repo.anaconda.cloud/repo/main
geos                      3.8.0                he6710b0_0    https://repo.anaconda.cloud/repo/main
geotiff                   1.7.0                hd69d5b1_0    https://repo.anaconda.cloud/repo/main
giflib                    5.2.1                h7b6447c_0    https://repo.anaconda.cloud/repo/main
glib                      2.69.1               h4ff587b_1    https://repo.anaconda.cloud/repo/main
glob2                     0.7                pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
gmp                       6.2.1                h295c915_3    https://repo.anaconda.cloud/repo/main
gmpy2                     2.1.2            py38heeb90bb_0    https://repo.anaconda.cloud/repo/main
greenlet                  1.1.1            py38h295c915_0    https://repo.anaconda.cloud/repo/main
gst-plugins-base          1.14.0               h8213a91_2    https://repo.anaconda.cloud/repo/main
gstreamer                 1.14.0               h28cd5cc_2    https://repo.anaconda.cloud/repo/main
h5py                      3.7.0            py38h737f45e_0    https://repo.anaconda.cloud/repo/main
hdf4                      4.2.13               h3ca952b_2    https://repo.anaconda.cloud/repo/main
hdf5                      1.10.6               hb1b8bf9_0    https://repo.anaconda.cloud/repo/main
heapdict                  1.0.1              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
holoviews                 1.15.0           py38h06a4308_0    https://repo.anaconda.cloud/repo/main
hvplot                    0.8.0            py38h06a4308_0    https://repo.anaconda.cloud/repo/main
hyperlink                 21.0.0             pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
icu                       58.2                 he6710b0_3    https://repo.anaconda.cloud/repo/main
idna                      3.3                pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
imagecodecs               2021.8.26        py38hf0132c2_1    https://repo.anaconda.cloud/repo/main
imageio                   2.19.3           py38h06a4308_0    https://repo.anaconda.cloud/repo/main
imagesize                 1.4.1            py38h06a4308_0    https://repo.anaconda.cloud/repo/main
importlib-metadata        4.11.3           py38h06a4308_0    https://repo.anaconda.cloud/repo/main
importlib_metadata        4.11.3               hd3eb1b0_0    https://repo.anaconda.cloud/repo/main
importlib_resources       5.2.0              pyhd3eb1b0_1    https://repo.anaconda.cloud/repo/main
incremental               21.3.0             pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
inflection                0.5.1            py38h06a4308_0    https://repo.anaconda.cloud/repo/main
iniconfig                 1.1.1              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
intake                    0.6.5              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
intel-openmp              2021.4.0          h06a4308_3561    https://repo.anaconda.cloud/repo/main
intervaltree              3.1.0              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
ipykernel                 6.15.2           py38h06a4308_0    https://repo.anaconda.cloud/repo/main
ipython                   7.31.1           py38h06a4308_1    https://repo.anaconda.cloud/repo/main
ipython_genutils          0.2.0              pyhd3eb1b0_1    https://repo.anaconda.cloud/repo/main
ipywidgets                7.6.5              pyhd3eb1b0_1    https://repo.anaconda.cloud/repo/main
isort                     5.9.3              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
itemadapter               0.3.0              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
itemloaders               1.0.4              pyhd3eb1b0_1    https://repo.anaconda.cloud/repo/main
itsdangerous              2.0.1              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
jake                      2.1.1              pyhd8ed1ab_0    conda-forge
jdcal                     1.4.1              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
jedi                      0.18.1           py38h06a4308_1    https://repo.anaconda.cloud/repo/main
jeepney                   0.7.1              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
jellyfish                 0.9.0            py38h7f8727e_0    https://repo.anaconda.cloud/repo/main
jinja2                    2.11.3             pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
jinja2-time               0.2.0              pyhd3eb1b0_3    https://repo.anaconda.cloud/repo/main
jmespath                  0.10.0             pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
joblib                    1.1.0              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
jpeg                      9e                   h7f8727e_0    https://repo.anaconda.cloud/repo/main
jq                        1.6               h27cfd23_1000    https://repo.anaconda.cloud/repo/main
json-c                    0.13.1               h1bed415_0    https://repo.anaconda.cloud/repo/main
json5                     0.9.6              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
jsonschema                4.16.0           py38h06a4308_0    https://repo.anaconda.cloud/repo/main
jupyter                   1.0.0            py38h06a4308_8    https://repo.anaconda.cloud/repo/main
jupyter_client            7.3.4            py38h06a4308_0    https://repo.anaconda.cloud/repo/main
jupyter_console           6.4.3              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
jupyter_core              4.11.1           py38h06a4308_0    https://repo.anaconda.cloud/repo/main
jupyter_server            1.18.1           py38h06a4308_0    https://repo.anaconda.cloud/repo/main
jupyterlab                3.4.4            py38h06a4308_0    https://repo.anaconda.cloud/repo/main
jupyterlab_pygments       0.1.2                      py_0    https://repo.anaconda.cloud/repo/main
jupyterlab_server         2.10.3             pyhd3eb1b0_1    https://repo.anaconda.cloud/repo/main
jupyterlab_widgets        1.0.0              pyhd3eb1b0_1    https://repo.anaconda.cloud/repo/main
jxrlib                    1.1                  h7b6447c_2    https://repo.anaconda.cloud/repo/main
kealib                    1.4.14               hb50703a_1    https://repo.anaconda.cloud/repo/main
keyring                   23.4.0           py38h06a4308_0    https://repo.anaconda.cloud/repo/main
kiwisolver                1.4.2            py38h295c915_0    https://repo.anaconda.cloud/repo/main
krb5                      1.19.2               hac12032_0    https://repo.anaconda.cloud/repo/main
lazy-object-proxy         1.6.0            py38h27cfd23_0    https://repo.anaconda.cloud/repo/main
lcms2                     2.12                 h3be6417_0    https://repo.anaconda.cloud/repo/main
ld_impl_linux-64          2.38                 h1181459_1    https://repo.anaconda.cloud/repo/main
lerc                      3.0                  h295c915_0    https://repo.anaconda.cloud/repo/main
libaec                    1.0.4                he6710b0_1    https://repo.anaconda.cloud/repo/main
libarchive                3.6.1                hab531cd_0    https://repo.anaconda.cloud/repo/main
libboost                  1.73.0              h28710b8_12    https://repo.anaconda.cloud/repo/main
libbrotlicommon           1.0.9                h5eee18b_7    https://repo.anaconda.cloud/repo/main
libbrotlidec              1.0.9                h5eee18b_7    https://repo.anaconda.cloud/repo/main
libbrotlienc              1.0.9                h5eee18b_7    https://repo.anaconda.cloud/repo/main
libclang                  10.0.1          default_hb85057a_2    https://repo.anaconda.cloud/repo/main
libcurl                   7.84.0               h91b91d3_0    https://repo.anaconda.cloud/repo/main
libdap4                   3.19.1               h6ec2957_0    https://repo.anaconda.cloud/repo/main
libdeflate                1.8                  h7f8727e_5    https://repo.anaconda.cloud/repo/main
libedit                   3.1.20210910         h7f8727e_0    https://repo.anaconda.cloud/repo/main
libev                     4.33                 h7f8727e_1    https://repo.anaconda.cloud/repo/main
libevent                  2.1.12               h8f2d780_0    https://repo.anaconda.cloud/repo/main
libffi                    3.3                  he6710b0_2    https://repo.anaconda.cloud/repo/main
libgcc-ng                 11.2.0               h1234567_1    https://repo.anaconda.cloud/repo/main
libgdal                   3.0.2                h1d2d1f6_3    https://repo.anaconda.cloud/repo/main
libgfortran-ng            7.5.0               ha8ba4b0_17    https://repo.anaconda.cloud/repo/main
libgfortran4              7.5.0               ha8ba4b0_17    https://repo.anaconda.cloud/repo/main
libgomp                   11.2.0               h1234567_1    https://repo.anaconda.cloud/repo/main
libidn2                   2.3.2                h7f8727e_0    https://repo.anaconda.cloud/repo/main
libkml                    1.3.0                h7ecb851_5    https://repo.anaconda.cloud/repo/main
liblief                   0.11.5               h295c915_1    https://repo.anaconda.cloud/repo/main
libllvm10                 10.0.1               hbcb73fb_5    https://repo.anaconda.cloud/repo/main
libllvm11                 11.1.0               h9e868ea_5    https://repo.anaconda.cloud/repo/main
libnetcdf                 4.8.1                h42ceab0_1    https://repo.anaconda.cloud/repo/main
libnghttp2                1.46.0               hce63b2e_0    https://repo.anaconda.cloud/repo/main
libpng                    1.6.37               hbc83047_0    https://repo.anaconda.cloud/repo/main
libpq                     12.9                 h16c4e8d_3    https://repo.anaconda.cloud/repo/main
libsodium                 1.0.18               h7b6447c_0    https://repo.anaconda.cloud/repo/main
libspatialindex           1.9.3                h2531618_0    https://repo.anaconda.cloud/repo/main
libspatialite             4.3.0a              hbedb2dc_20    https://repo.anaconda.cloud/repo/main
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qstylizer                 0.1.10             pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
qt                        5.15.9               h06a4308_0    https://repo.anaconda.cloud/repo/main
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qt-webengine              5.15.9               hd2b0992_4    https://repo.anaconda.cloud/repo/main
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sqlite                    3.39.3               h5082296_0    https://repo.anaconda.cloud/repo/main
statsmodels               0.13.2           py38h7f8727e_0    https://repo.anaconda.cloud/repo/main
sympy                     1.10.1           py38h06a4308_0    https://repo.anaconda.cloud/repo/main
tabulate                  0.8.10           py38h06a4308_0    https://repo.anaconda.cloud/repo/main
tbb                       2021.6.0             hdb19cb5_0    https://repo.anaconda.cloud/repo/main
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tblib                     1.7.0              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
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terminado                 0.13.1           py38h06a4308_0    https://repo.anaconda.cloud/repo/main
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text-unidecode            1.3                pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
textdistance              4.2.1              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
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tifffile                  2021.7.2           pyhd3eb1b0_2    https://repo.anaconda.cloud/repo/main
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tinydb                    4.7.1              pyhd8ed1ab_0    conda-forge
tk                        8.6.12               h1ccaba5_0    https://repo.anaconda.cloud/repo/main
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toml                      0.10.2             pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
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types-urllib3             1.26.25.8          pyhd8ed1ab_0    conda-forge
typing-extensions         4.3.0            py38h06a4308_0    https://repo.anaconda.cloud/repo/main
typing_extensions         4.3.0            py38h06a4308_0    https://repo.anaconda.cloud/repo/main
ujson                     5.4.0            py38h6a678d5_0    https://repo.anaconda.cloud/repo/main
unidecode                 1.2.0              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
unixodbc                  2.3.11               h5eee18b_0    https://repo.anaconda.cloud/repo/main
urllib3                   1.26.11          py38h06a4308_0    https://repo.anaconda.cloud/repo/main
w3lib                     1.21.0             pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
watchdog                  2.1.6            py38h06a4308_0    https://repo.anaconda.cloud/repo/main
wcwidth                   0.2.5              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
webencodings              0.5.1                    py38_1    https://repo.anaconda.cloud/repo/main
websocket-client          0.58.0           py38h06a4308_4    https://repo.anaconda.cloud/repo/main
werkzeug                  2.0.3              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
wget                      1.21.3               h0b77cf5_0    https://repo.anaconda.cloud/repo/main
whatthepatch              1.0.2            py38h06a4308_0    https://repo.anaconda.cloud/repo/main
wheel                     0.37.1             pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
widgetsnbextension        3.5.2            py38h06a4308_0    https://repo.anaconda.cloud/repo/main
wrapt                     1.14.1           py38h5eee18b_0    https://repo.anaconda.cloud/repo/main
wurlitzer                 3.0.2            py38h06a4308_0    https://repo.anaconda.cloud/repo/main
xarray                    0.20.1             pyhd3eb1b0_1    https://repo.anaconda.cloud/repo/main
xerces-c                  3.2.4                h94c2ce2_0    https://repo.anaconda.cloud/repo/main
xlrd                      2.0.1              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
xlsxwriter                3.0.3              pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
xyzservices               2022.9.0         py38h06a4308_1    https://repo.anaconda.cloud/repo/main
xz                        5.2.6                h5eee18b_0    https://repo.anaconda.cloud/repo/main
yaml                      0.2.5                h7b6447c_0    https://repo.anaconda.cloud/repo/main
yapf                      0.31.0             pyhd3eb1b0_0    https://repo.anaconda.cloud/repo/main
zeromq                    4.3.4                h2531618_0    https://repo.anaconda.cloud/repo/main
zfp                       0.5.5                h295c915_6    https://repo.anaconda.cloud/repo/main
zict                      2.1.0            py38h06a4308_0    https://repo.anaconda.cloud/repo/main
zipp                      3.8.0            py38h06a4308_0    https://repo.anaconda.cloud/repo/main
zlib                      1.2.12               h5eee18b_3    https://repo.anaconda.cloud/repo/main
zope                      1.0                      py38_1    https://repo.anaconda.cloud/repo/main
zope.interface            5.4.0            py38h7f8727e_0    https://repo.anaconda.cloud/repo/main
zstd                      1.5.2                ha4553b6_0    https://repo.anaconda.cloud/repo/main

DavidGietka-NOAA · 2023-03-16T17:50:32Z

Hello,
It could be the same as #128. The error comes from a similar module. I am not sure.

madpah · 2023-03-16T18:19:37Z

@DavidGietka-NOAA - just want to be clear on the command you are running...

jake==2.1.1 does not support ingestion from CONDA (either file or piping). jake < 3.0.0 only supports reading dependencies installed in the active (current) Python environment.

jake==3.0.0 does support input from CONDA when run as conda list --explicit | jake ddt -t CONDA -f OR conda list --json | jake ddt -t CONDA_JSON

Are you able to try the above commands with jake==3.0.0 and report back?

madpah · 2023-03-16T18:20:41Z

As an aside, the original error you report will be due to a package that is installed in your current Python environment (which I'd been keen to track down as it's getting a CWE-noinfo from OSS Index - can you provide output of pip freeze to aid triage?

DavidGietka-NOAA · 2023-03-16T18:24:27Z

Hello,
Here is the output of pip freeze.
(basesec) [root@ngs-awu-tsapp ~]# pip freeze
alabaster @ file:///home/ktietz/src/ci/alabaster_1611921544520/work
anaconda-client==1.11.0
anaconda-navigator==2.3.2
anaconda-project @ file:///opt/conda/conda-bld/anaconda-project_1660339890420/work
anyio @ file:///tmp/build/80754af9/anyio_1644481698350/work/dist
appdirs==1.4.4
argon2-cffi @ file:///opt/conda/conda-bld/argon2-cffi_1645000214183/work
argon2-cffi-bindings @ file:///tmp/build/80754af9/argon2-cffi-bindings_1644569684262/work
arrow @ file:///opt/conda/conda-bld/arrow_1649166651673/work
astroid @ file:///tmp/abs_e5wkt48jiz/croots/recipe/astroid_1659023120113/work
astropy @ file:///opt/conda/conda-bld/astropy_1657786094003/work
atomicwrites==1.4.0
attrs @ file:///opt/conda/conda-bld/attrs_1642510447205/work
Automat @ file:///tmp/build/80754af9/automat_1600298431173/work
autopep8 @ file:///opt/conda/conda-bld/autopep8_1650463822033/work
awscli==1.20.4
Babel @ file:///tmp/build/80754af9/babel_1620871417480/work
backcall @ file:///home/ktietz/src/ci/backcall_1611930011877/work
backports.functools-lru-cache @ file:///tmp/build/80754af9/backports.functools_lru_cache_1618170165463/work
backports.tempfile @ file:///home/linux1/recipes/ci/backports.tempfile_1610991236607/work
backports.weakref==1.0.post1
bcrypt @ file:///tmp/abs_6fpe92qzzo/croots/recipe/bcrypt_1659554336150/work
beautifulsoup4 @ file:///opt/conda/conda-bld/beautifulsoup4_1650462163268/work
binaryornot @ file:///tmp/build/80754af9/binaryornot_1617751525010/work
bitarray @ file:///opt/conda/conda-bld/bitarray_1657739645104/work
bkcharts==0.2
black @ file:///opt/conda/conda-bld/black_1660237809219/work
bleach @ file:///opt/conda/conda-bld/bleach_1641577558959/work
bokeh @ file:///tmp/abs_34854e1f-d7d3-4f22-85d9-1075588e4ecdga64o0qg/croots/recipe/bokeh_1658136654619/work
boto3 @ file:///tmp/abs_ae3c72db-af47-4298-baea-7270430e2c96scbpg1_h/croots/recipe/boto3_1657820109150/work
botocore @ file:///croot/botocore_1667494008919/work
Bottleneck @ file:///opt/conda/conda-bld/bottleneck_1657175564434/work
branca @ file:///croot/branca_1675157607453/work
brotlipy==0.7.0
certifi==2022.12.7
cffi @ file:///tmp/abs_98z5h56wf8/croots/recipe/cffi_1659598650955/work
chardet @ file:///tmp/build/80754af9/chardet_1607706746162/work
charset-normalizer @ file:///tmp/build/80754af9/charset-normalizer_1630003229654/work
click @ file:///tmp/build/80754af9/click_1646038465422/work
click-plugins @ file:///Users/ktietz/demo/mc3/conda-bld/click-plugins_1630665883852/work
cligj==0.7.2
cloudpickle @ file:///tmp/build/80754af9/cloudpickle_1632508026186/work
clyent==1.2.2
colorama @ file:///croot/colorama_1672386526460/work
colorcet @ file:///tmp/build/80754af9/colorcet_1651851437012/work
commonmark==0.9.1
conda==23.1.0
conda-build==3.23.1
conda-content-trust @ file:///tmp/abs_5952f1c8-355c-4855-ad2e-538535021ba5h26t22e5/croots/recipe/conda-content-trust_1658126371814/work
conda-pack @ file:///tmp/build/80754af9/conda-pack_1611163042455/work
conda-package-handling @ file:///croot/conda-package-handling_1666940373510/work
conda-repo-cli==1.0.24
conda-token @ file:///Users/paulyim/miniconda3/envs/c3i/conda-bld/conda-token_1662660369760/work
conda-verify==3.4.2
constantly==15.1.0
cookiecutter @ file:///opt/conda/conda-bld/cookiecutter_1649151442564/work
cryptography @ file:///tmp/build/80754af9/cryptography_1652083738073/work
cssselect==1.1.0
cx-Oracle==8.1.0
cycler @ file:///tmp/build/80754af9/cycler_1637851556182/work
cyclonedx-bom @ file:///home/conda/feedstock_root/build_artifacts/cyclonedx-bom_1676140471111/work/dist
cyclonedx-python-lib @ file:///home/conda/feedstock_root/build_artifacts/cyclonedx-python-lib_1673573852148/work
Cython @ file:///opt/conda/conda-bld/cython_1663692770955/work
cytoolz==0.11.0
daal4py==2021.6.0
dask @ file:///tmp/abs_994957d9-ec12-411f-b953-c010f9d489d10hj3gz4k/croots/recipe/dask-core_1658513209934/work
datashader @ file:///tmp/abs_aa58dfo4_s/croots/recipe/datashader_1659349033064/work
datashape==0.5.4
debugpy @ file:///tmp/build/80754af9/debugpy_1637091796427/work
decorator @ file:///opt/conda/conda-bld/decorator_1643638310831/work
defusedxml @ file:///tmp/build/80754af9/defusedxml_1615228127516/work
diff-match-patch @ file:///Users/ktietz/demo/mc3/conda-bld/diff-match-patch_1630511840874/work
dill @ file:///tmp/build/80754af9/dill_1623919422540/work
distributed @ file:///tmp/abs_593da390-bd12-4acc-ba49-4c9993cbe8abgqg_w3rb/croots/recipe/distributed_1658520746481/work
docutils @ file:///opt/conda/conda-bld/docutils_1657175430858/work
dparse==0.6.2
earthscope-cli==0.7.0
earthscope-sdk==0.1.0
entrypoints @ file:///tmp/build/80754af9/entrypoints_1649926445639/work
et-xmlfile==1.1.0
fastjsonschema @ file:///opt/conda/conda-bld/python-fastjsonschema_1661371079312/work
filelock @ file:///opt/conda/conda-bld/filelock_1647002191454/work
Fiona==1.8.22
flake8 @ file:///opt/conda/conda-bld/flake8_1648129545443/work
Flask @ file:///home/ktietz/src/ci/flask_1611932660458/work
folium @ file:///croot/folium_1675353398721/work
fonttools==4.25.0
fsspec @ file:///opt/conda/conda-bld/fsspec_1659972197723/work
future==0.18.2
GDAL==3.0.2
gensim @ file:///tmp/build/80754af9/gensim_1646824935317/work
geopandas @ file:///croot/geopandas_1675672011738/work
glob2 @ file:///home/linux1/recipes/ci/glob2_1610991677669/work
gmpy2 @ file:///tmp/build/80754af9/gmpy2_1645455532332/work
greenlet @ file:///tmp/build/80754af9/greenlet_1628887725296/work
h5py @ file:///tmp/abs_4aewd3wzey/croots/recipe/h5py_1659091371897/work
HeapDict @ file:///Users/ktietz/demo/mc3/conda-bld/heapdict_1630598515714/work
holoviews @ file:///tmp/abs_eecc808c-455e-4be4-9911-ecf8341b3a34jfwskiqe/croots/recipe/holoviews_1658171506757/work
hvplot @ file:///tmp/abs_6fcys5jcv1/croots/recipe/hvplot_1659026496554/work
hyperlink @ file:///tmp/build/80754af9/hyperlink_1610130746837/work
idna @ file:///tmp/build/80754af9/idna_1637925883363/work
imagecodecs @ file:///opt/conda/conda-bld/imagecodecs_1664561985385/work
imageio @ file:///tmp/abs_cd920173-f360-47c5-97b0-bf4d1076d5d4dvic0oys/croots/recipe/imageio_1658785036907/work
imagesize @ file:///opt/conda/conda-bld/imagesize_1657179498843/work
importlib-metadata @ file:///tmp/build/80754af9/importlib-metadata_1648562408398/work
importlib-resources @ file:///tmp/build/80754af9/importlib_resources_1625135880749/work
incremental @ file:///tmp/build/80754af9/incremental_1636629750599/work
inflection==0.5.1
iniconfig @ file:///home/linux1/recipes/ci/iniconfig_1610983019677/work
intake @ file:///opt/conda/conda-bld/intake_1647436631684/work
intervaltree @ file:///Users/ktietz/demo/mc3/conda-bld/intervaltree_1630511889664/work
ipykernel @ file:///opt/conda/conda-bld/ipykernel_1662361798230/work
ipython @ file:///tmp/abs_94gruux8u8/croots/recipe/ipython_1659529858706/work
ipython-genutils @ file:///tmp/build/80754af9/ipython_genutils_1606773439826/work
ipywidgets @ file:///tmp/build/80754af9/ipywidgets_1634143127070/work
isort @ file:///tmp/build/80754af9/isort_1628603791788/work
itemadapter @ file:///tmp/build/80754af9/itemadapter_1626442940632/work
itemloaders @ file:///opt/conda/conda-bld/itemloaders_1646805235997/work
itsdangerous @ file:///tmp/build/80754af9/itsdangerous_1621432558163/work
jake @ file:///home/conda/feedstock_root/build_artifacts/jake_1654798945638/work
jdcal @ file:///Users/ktietz/demo/mc3/conda-bld/jdcal_1630584345063/work
jedi @ file:///tmp/build/80754af9/jedi_1644315233700/work
jeepney @ file:///tmp/build/80754af9/jeepney_1627537048313/work
jellyfish @ file:///tmp/build/80754af9/jellyfish_1647962548397/work
Jinja2 @ file:///tmp/build/80754af9/jinja2_1612213139570/work
jinja2-time @ file:///opt/conda/conda-bld/jinja2-time_1649251842261/work
jmespath @ file:///Users/ktietz/demo/mc3/conda-bld/jmespath_1630583964805/work
joblib @ file:///tmp/build/80754af9/joblib_1635411271373/work
json5 @ file:///tmp/build/80754af9/json5_1624432770122/work
jsonschema @ file:///opt/conda/conda-bld/jsonschema_1663375472438/work
jupyter @ file:///tmp/abs_33h4eoipez/croots/recipe/jupyter_1659349046347/work
jupyter-console @ file:///opt/conda/conda-bld/jupyter_console_1647002188872/work
jupyter-server @ file:///tmp/abs_b88b31b8-83b9-476d-a46d-e563c421f38fvsnyi1ur/croots/recipe/jupyter_server_1658754481507/work
jupyter_client @ file:///opt/conda/conda-bld/jupyter_client_1661848916004/work
jupyter_core @ file:///opt/conda/conda-bld/jupyter_core_1664917302524/work
jupyterlab @ file:///tmp/abs_12f3h01vmy/croots/recipe/jupyterlab_1658907535764/work
jupyterlab-pygments @ file:///tmp/build/80754af9/jupyterlab_pygments_1601490720602/work
jupyterlab-server @ file:///opt/conda/conda-bld/jupyterlab_server_1644500396812/work
jupyterlab-widgets @ file:///tmp/build/80754af9/jupyterlab_widgets_1609884341231/work
keyring @ file:///tmp/build/80754af9/keyring_1638531356231/work
kiwisolver @ file:///opt/conda/conda-bld/kiwisolver_1653292039266/work
lazy-object-proxy @ file:///tmp/build/80754af9/lazy-object-proxy_1616526917483/work
libarchive-c @ file:///tmp/build/80754af9/python-libarchive-c_1617780486945/work
llvmlite==0.38.0
locket @ file:///opt/conda/conda-bld/locket_1652903118915/work
lxml @ file:///opt/conda/conda-bld/lxml_1657545139709/work
lz4 @ file:///tmp/build/80754af9/lz4_1619516501300/work
mapclassify @ file:///croot/mapclassify_1675157730177/work
Markdown @ file:///tmp/build/80754af9/markdown_1614363528767/work
MarkupSafe @ file:///tmp/build/80754af9/markupsafe_1621528148836/work
matplotlib @ file:///opt/conda/conda-bld/matplotlib-suite_1660167928326/work
matplotlib-inline @ file:///opt/conda/conda-bld/matplotlib-inline_1662014470464/work
mccabe @ file:///opt/conda/conda-bld/mccabe_1644221741721/work
mistune==0.8.4
mkl-fft==1.3.1
mkl-random @ file:///tmp/build/80754af9/mkl_random_1626186064646/work
mkl-service==2.4.0
mock @ file:///tmp/build/80754af9/mock_1607622725907/work
mpmath==1.2.1
msgpack @ file:///opt/conda/conda-bld/msgpack-python_1652362659880/work
multipledispatch==0.6.0
munch @ file:///Users/ktietz/demo/mc3/conda-bld/munch_1630566382504/work
munkres==1.1.4
mypy-extensions==0.4.3
navigator-updater==0.3.0
nbclassic @ file:///opt/conda/conda-bld/nbclassic_1644943264176/work
nbclient @ file:///tmp/build/80754af9/nbclient_1650308366712/work
nbconvert @ file:///opt/conda/conda-bld/nbconvert_1649751911790/work
nbformat @ file:///opt/conda/conda-bld/nbformat_1663744952973/work
nest-asyncio @ file:///tmp/build/80754af9/nest-asyncio_1649847908682/work
networkx @ file:///opt/conda/conda-bld/networkx_1657784097507/work
nltk @ file:///opt/conda/conda-bld/nltk_1645628263994/work
nose @ file:///opt/conda/conda-bld/nose_1642704612149/work
notebook @ file:///tmp/abs_abf6xa6h6f/croots/recipe/notebook_1659083654985/work
numba @ file:///opt/conda/conda-bld/numba_1648040517072/work
numexpr @ file:///opt/conda/conda-bld/numexpr_1656940300424/work
numpy @ file:///opt/conda/conda-bld/numpy_and_numpy_base_1653915516269/work
numpydoc @ file:///opt/conda/conda-bld/numpydoc_1657529872251/work
olefile @ file:///Users/ktietz/demo/mc3/conda-bld/olefile_1629805411829/work
openpyxl==3.0.10
ossindex-lib @ file:///home/conda/feedstock_root/build_artifacts/ossindex-lib_1662989003282/work
packageurl-python @ file:///home/conda/feedstock_root/build_artifacts/packageurl-python_1644990561976/work
packaging @ file:///tmp/build/80754af9/packaging_1637314298585/work
pandas==1.4.4
pandocfilters @ file:///opt/conda/conda-bld/pandocfilters_1643405455980/work
panel @ file:///tmp/abs_bb3d3b2f-b3ea-41c0-a72e-8f54852d5cdfs70inytz/croots/recipe/panel_1658133826470/work
param @ file:///tmp/build/80754af9/param_1636647414893/work
parsel @ file:///tmp/build/80754af9/parsel_1646739961665/work
parso @ file:///opt/conda/conda-bld/parso_1641458642106/work
partd @ file:///opt/conda/conda-bld/partd_1647245470509/work
pathlib @ file:///Users/ktietz/demo/mc3/conda-bld/pathlib_1629713961906/work
pathspec @ file:///tmp/abs_1foqurpsov/croots/recipe/pathspec_1659627126545/work
patsy==0.5.2
pep8==1.7.1
pexpect @ file:///tmp/build/80754af9/pexpect_1605563209008/work
pickleshare @ file:///tmp/build/80754af9/pickleshare_1606932040724/work
Pillow==9.2.0
pip-requirements-parser @ file:///home/conda/feedstock_root/build_artifacts/pip-requirements-parser_1672265598496/work
pkginfo @ file:///tmp/build/80754af9/pkginfo_1643162084911/work
pkgutil_resolve_name @ file:///opt/conda/conda-bld/pkgutil-resolve-name_1661463321198/work
platformdirs @ file:///opt/conda/conda-bld/platformdirs_1662711380096/work
plotly @ file:///tmp/abs_7afcdfad-dbbb-49d2-adea-186abf525c45jbnd8p95/croots/recipe/plotly_1658160053621/work
pluggy @ file:///tmp/build/80754af9/pluggy_1648042571233/work
ply==3.11
polling2 @ file:///home/conda/feedstock_root/build_artifacts/polling2_1635787075008/work
poyo @ file:///tmp/build/80754af9/poyo_1617751526755/work
prometheus-client @ file:///tmp/abs_d3zeliano1/croots/recipe/prometheus_client_1659455100375/work
prompt-toolkit @ file:///tmp/build/80754af9/prompt-toolkit_1633440160888/work
Protego @ file:///tmp/build/80754af9/protego_1598657180827/work
psutil @ file:///opt/conda/conda-bld/psutil_1656431268089/work
ptyprocess @ file:///tmp/build/80754af9/ptyprocess_1609355006118/work/dist/ptyprocess-0.7.0-py2.py3-none-any.whl
py @ file:///opt/conda/conda-bld/py_1644396412707/work
pyasn1 @ file:///Users/ktietz/demo/mc3/conda-bld/pyasn1_1629708007385/work
pyasn1-modules==0.2.8
pycodestyle @ file:///tmp/build/80754af9/pycodestyle_1636635402688/work
pycosat==0.6.3
pycparser @ file:///tmp/build/80754af9/pycparser_1636541352034/work
pyct @ file:///tmp/abs_68a517ee-55fb-480e-82ab-1a8adb440a58x7qfc024/croots/recipe/pyct_1658500310800/work
pycurl==7.45.1
PyDispatcher==2.0.5
pydocstyle @ file:///tmp/build/80754af9/pydocstyle_1621600989141/work
pyerfa @ file:///tmp/build/80754af9/pyerfa_1621560806183/work
pyfiglet==0.8.post1
pyflakes @ file:///tmp/build/80754af9/pyflakes_1636644436481/work
Pygments @ file:///opt/conda/conda-bld/pygments_1644249106324/work
PyHamcrest @ file:///tmp/build/80754af9/pyhamcrest_1615748656804/work
PyJWT @ file:///opt/conda/conda-bld/pyjwt_1657544592787/work
pylint @ file:///tmp/abs_6fxmc66kyk/croots/recipe/pylint_1659110350161/work
pyls-spyder==0.4.0
pyodbc @ file:///tmp/abs_d365zrcsdp/croots/recipe/pyodbc_1659513794382/work
pyOpenSSL @ file:///opt/conda/conda-bld/pyopenssl_1643788558760/work
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pyproj @ file:///tmp/build/80754af9/pyproj_1614277937369/work
PyQt5-sip==12.11.0
pyrsistent @ file:///tmp/build/80754af9/pyrsistent_1636110947380/work
PySocks @ file:///tmp/build/80754af9/pysocks_1605305779399/work
pytest==7.1.2
python-dateutil @ file:///tmp/build/80754af9/python-dateutil_1626374649649/work
python-lsp-black @ file:///opt/conda/conda-bld/python-lsp-black_1661852031497/work
python-lsp-jsonrpc==1.0.0
python-lsp-server @ file:///opt/conda/conda-bld/python-lsp-server_1661813814476/work
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pytz @ file:///opt/conda/conda-bld/pytz_1654762638606/work
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PyWavelets @ file:///tmp/build/80754af9/pywavelets_1648710120733/work
pyxdg @ file:///tmp/build/80754af9/pyxdg_1603822279816/work
PyYAML==6.0
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QDarkStyle @ file:///tmp/build/80754af9/qdarkstyle_1617386714626/work
qstylizer @ file:///tmp/build/80754af9/qstylizer_1617713584600/work/dist/qstylizer-0.1.10-py2.py3-none-any.whl
QtAwesome @ file:///tmp/build/80754af9/qtawesome_1637160816833/work
qtconsole @ file:///opt/conda/conda-bld/qtconsole_1662018252641/work
QtPy @ file:///opt/conda/conda-bld/qtpy_1662014892439/work
queuelib==1.5.0
regex @ file:///tmp/abs_41f5bce5-0a2e-45aa-b231-1fd2fbd57753gfpe6sjm/croots/recipe/regex_1658257178822/work
requests @ file:///opt/conda/conda-bld/requests_1657734628632/work
requests-file @ file:///Users/ktietz/demo/mc3/conda-bld/requests-file_1629455781986/work
rich @ file:///home/conda/feedstock_root/build_artifacts/rich_1641157475705/work
rope @ file:///opt/conda/conda-bld/rope_1643788605236/work
rsa==4.7.2
Rtree @ file:///tmp/build/80754af9/rtree_1618420845272/work
ruamel-yaml-conda @ file:///tmp/build/80754af9/ruamel_yaml_1616016699510/work
ruamel.yaml @ file:///croot/ruamel.yaml_1666304550667/work
ruamel.yaml.clib @ file:///croot/ruamel.yaml.clib_1666302247304/work
s3transfer @ file:///opt/conda/conda-bld/s3transfer_1654524197066/work
safety==2.3.5
scikit-image @ file:///tmp/build/80754af9/scikit-image_1648196304918/work
scikit-learn @ file:///tmp/build/80754af9/scikit-learn_1642617107864/work
scikit-learn-intelex==2021.20221004.171638
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Scrapy @ file:///tmp/abs_e3bmwi01y8/croots/recipe/scrapy_1659598696235/work
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SecretStorage @ file:///tmp/build/80754af9/secretstorage_1614022784285/work
Send2Trash @ file:///tmp/build/80754af9/send2trash_1632406701022/work
service-identity @ file:///Users/ktietz/demo/mc3/conda-bld/service_identity_1629460757137/work
Shapely @ file:///opt/conda/conda-bld/shapely_1664521582171/work
shellingham==1.5.0
sip @ file:///tmp/abs_44cd77b_pu/croots/recipe/sip_1659012365470/work
six @ file:///tmp/build/80754af9/six_1644875935023/work
smart-open @ file:///opt/conda/conda-bld/smart_open_1651563547610/work
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soupsieve @ file:///tmp/build/80754af9/soupsieve_1636706018808/work
Sphinx @ file:///opt/conda/conda-bld/sphinx_1657784123546/work
sphinxcontrib-applehelp @ file:///home/ktietz/src/ci/sphinxcontrib-applehelp_1611920841464/work
sphinxcontrib-devhelp @ file:///home/ktietz/src/ci/sphinxcontrib-devhelp_1611920923094/work
sphinxcontrib-htmlhelp @ file:///tmp/build/80754af9/sphinxcontrib-htmlhelp_1623945626792/work
sphinxcontrib-jsmath @ file:///home/ktietz/src/ci/sphinxcontrib-jsmath_1611920942228/work
sphinxcontrib-qthelp @ file:///home/ktietz/src/ci/sphinxcontrib-qthelp_1611921055322/work
sphinxcontrib-serializinghtml @ file:///tmp/build/80754af9/sphinxcontrib-serializinghtml_1624451540180/work
spyder @ file:///opt/conda/conda-bld/spyder_1663056818299/work
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SQLAlchemy @ file:///tmp/abs_18b3238f-9c23-4182-a392-63af30a93c1er8j_yw60/croots/recipe/sqlalchemy_1657867856580/work
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tables @ file:///croot/pytables_1673967643433/work
tabulate @ file:///opt/conda/conda-bld/tabulate_1657784105888/work
TBB==0.2
tblib @ file:///Users/ktietz/demo/mc3/conda-bld/tblib_1629402031467/work
tenacity @ file:///tmp/abs_9ca5cd06-f53b-4ea6-8eea-954e11157fddo5mhurpp/croots/recipe/tenacity_1657899103026/work
terminado @ file:///tmp/build/80754af9/terminado_1644322581811/work
testpath @ file:///opt/conda/conda-bld/testpath_1655908557405/work
text-unidecode @ file:///Users/ktietz/demo/mc3/conda-bld/text-unidecode_1629401354553/work
textdistance @ file:///tmp/build/80754af9/textdistance_1612461398012/work
threadpoolctl @ file:///Users/ktietz/demo/mc3/conda-bld/threadpoolctl_1629802263681/work
three-merge @ file:///tmp/build/80754af9/three-merge_1607553261110/work
tifffile @ file:///tmp/build/80754af9/tifffile_1627275862826/work
tinycss @ file:///tmp/build/80754af9/tinycss_1617713798712/work
tinydb @ file:///home/conda/feedstock_root/build_artifacts/tinydb_1673719807865/work
tldextract @ file:///opt/conda/conda-bld/tldextract_1646638314385/work
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tomli @ file:///opt/conda/conda-bld/tomli_1657175507142/work
tomlkit @ file:///tmp/abs_56_0lnnq5x/croots/recipe/tomlkit_1658946880479/work
toolz @ file:///tmp/build/80754af9/toolz_1636545406491/work
tornado @ file:///tmp/build/80754af9/tornado_1606942300299/work
tqdm @ file:///opt/conda/conda-bld/tqdm_1664392687731/work
traitlets @ file:///tmp/build/80754af9/traitlets_1636710298902/work
Twisted @ file:///tmp/abs_82802zpkox/croots/recipe/twisted_1659592759417/work
typer==0.6.1
types-docutils @ file:///home/conda/feedstock_root/build_artifacts/types-docutils_1677064729166/work
types-PyYAML @ file:///home/conda/feedstock_root/build_artifacts/types-pyyaml_1634271688778/work
types-requests @ file:///home/conda/feedstock_root/build_artifacts/types-requests_1677395061251/work
types-setuptools @ file:///home/conda/feedstock_root/build_artifacts/types-setuptools_1678332944948/work
types-urllib3 @ file:///home/conda/feedstock_root/build_artifacts/types-urllib3_1677450168143/work
typing_extensions @ file:///tmp/abs_ben9emwtky/croots/recipe/typing_extensions_1659638822008/work
ujson @ file:///opt/conda/conda-bld/ujson_1657544923770/work
Unidecode @ file:///tmp/build/80754af9/unidecode_1614712377438/work
urllib3 @ file:///tmp/abs_5dhwnz6atv/croots/recipe/urllib3_1659110457909/work
w3lib @ file:///Users/ktietz/demo/mc3/conda-bld/w3lib_1629359764703/work
watchdog @ file:///tmp/build/80754af9/watchdog_1638366565112/work
wcwidth @ file:///Users/ktietz/demo/mc3/conda-bld/wcwidth_1629357192024/work
webencodings==0.5.1
websocket-client @ file:///tmp/build/80754af9/websocket-client_1614804261064/work
Werkzeug @ file:///opt/conda/conda-bld/werkzeug_1645628268370/work
whatthepatch @ file:///opt/conda/conda-bld/whatthepatch_1661795988879/work
widgetsnbextension @ file:///tmp/build/80754af9/widgetsnbextension_1645009353553/work
wrapt @ file:///tmp/abs_c335821b-6e43-4504-9816-b1a52d3d3e1eel6uae8l/croots/recipe/wrapt_1657814400492/work
wurlitzer @ file:///tmp/build/80754af9/wurlitzer_1638354972036/work
xarray @ file:///opt/conda/conda-bld/xarray_1639166117697/work
xlrd @ file:///tmp/build/80754af9/xlrd_1608072521494/work
XlsxWriter @ file:///opt/conda/conda-bld/xlsxwriter_1649073856329/work
xyzservices @ file:///croot/xyzservices_1675159059961/work
yapf @ file:///tmp/build/80754af9/yapf_1615749224965/work
zict==2.1.0
zipp @ file:///opt/conda/conda-bld/zipp_1652341764480/work
zope.interface @ file:///tmp/build/80754af9/zope.interface_1625035545636/work

DavidGietka-NOAA · 2023-03-16T18:54:20Z

Hello,
conda list --explicit | jake ddt -t CONDA returns 0 findings which I am sure is not true.
Summary
┏━━━━━━━━━━━━━━━━━━━━━━┳━━━━━━━━━━━━━━━━━━━━━━━┓
┃ Audited Dependencies ┃ Vulnerabilities Found ┃
┡━━━━━━━━━━━━━━━━━━━━━━╇━━━━━━━━━━━━━━━━━━━━━━━┩
│ 486 │ 0 │
└──────────────────────┴───────────────────────┘

DavidGietka-NOAA · 2023-03-16T18:55:44Z

The second commands returns an error:
conda list --json | jake ddt -t CONDA_JSON

Traceback (most recent call last):
File "/ngs/projects/binaries/anaconda3/envs/basesec/bin/jake", line 10, in
sys.exit(main())
File "/ngs/projects/binaries/anaconda3/envs/basesec/lib/python3.8/site-packages/jake/app.py", line 122, in main
JakeCmd(args).execute()
File "/ngs/projects/binaries/anaconda3/envs/basesec/lib/python3.8/site-packages/jake/app.py", line 96, in execute
exit_code: int = command.execute(arguments=self._arguments)
File "/ngs/projects/binaries/anaconda3/envs/basesec/lib/python3.8/site-packages/jake/command/init.py", line 43, in execute
return self.handle_args()
File "/ngs/projects/binaries/anaconda3/envs/basesec/lib/python3.8/site-packages/jake/command/oss.py", line 173, in handle_args
cwes=[int(oic_vulnerability.cwe[4:a])] if oic_vulnerability.cwe else None,
NameError: name 'a' is not defined

madpah · 2023-03-16T23:29:13Z

Hi @DavidGietka-NOAA - sorry - that has helped less :-(

The error you have seen in your last message is super weird - NameError: name 'a' is not defined as this IS NOT in the jake codebase for version 2.1.1 or 3.0.0??

For 2.1.1, the line is actually line 170 and does not refer to the variable a?

Did you install jake from PyPi or from somewhere else?

DavidGietka-NOAA · 2023-03-16T23:46:08Z

Hello
I installed jake 3.0.0 and I installed it with
conda install -c conda-forge jake

1-some · 2023-03-23T09:06:46Z

FYI: I also get the error when using the jake ddt command: "ValueError: invalid literal for int() with base 10: 'noinfo'"

It seems related to the Python version in the environment. In my case the error is given when using Python 3.9.7. When using Python 3.11.0, it does not give the error and works (apart from the problem described in issue #139).

I'm using Windows 10 and conda 23.1.0.

bijuli74 · 2023-05-07T20:56:47Z

Hi have encountered this exact same error using both jake 2.1.1 and jake 3.0.0 version in a python venv for a lab in coursera. Just trying to check a simple webapp for vulnerabilities.

May be one can try here:
https://www.coursera.org/learn/application-security-and-monitoring/ungradedLti/ojqC8/hands-on-lab-evaluating-vulnerability-analysis

pip freeze output:
aniso8601==9.0.1
astroid==2.6.6
attrs==22.2.0
certifi==2023.5.7
charset-normalizer==2.0.12
click==7.1.2
colorama==0.4.5
commonmark==0.9.1
coverage==5.5
cyclonedx-bom==3.11.0
cyclonedx-python-lib==3.1.5
dataclasses==0.8
Flask==1.1.4
flask-restx==0.5.1
idna==3.4
importlib-metadata==4.8.3
isort==5.10.1
itsdangerous==1.1.0
jake==3.0.0
Jinja2==2.11.3
jsonschema==4.0.0
lazy-object-proxy==1.7.1
MarkupSafe==2.0.1
mccabe==0.6.1
nose==1.3.7
ossindex-lib==1.1.1
packageurl-python==0.10.4
packaging==21.3
pinocchio==0.4.2
pip-requirements-parser==32.0.1
pkg-resources==0.0.0
polling2==0.5.0
pyfiglet==0.8.post1
Pygments==2.14.0
pylint==2.8.2
pyparsing==3.0.9
pyrsistent==0.18.0
python-dotenv==0.20.0
pytz==2023.3
PyYAML==6.0
requests==2.27.1
rich==10.16.2
six==1.16.0
sortedcontainers==2.4.0
tinydb==4.7.0
toml==0.10.2
typed-ast==1.4.3
types-PyYAML==5.4.12
types-requests==2.30.0.0
types-setuptools==67.7.0.1
types-urllib3==1.26.25.12
typing-extensions==4.1.1
urllib3==1.26.15
Werkzeug==1.0.1
wrapt==1.12.1
zipp==3.6.0

ddowling · 2023-06-04T01:28:59Z

I am also seeing this issue this morning. Putting in some debug printing the issue appears to be due to CVE-2023032881 which is reporting a CWE or "CWE-noinfo". I added a simple patch to test for CWE-noinfo and set it back to None and jake completes the scan. This was the only oic_vulnerability with cwe equal to 'CWE-noinfo'

*** oss.py.orig	2023-06-04 11:25:28.877393202 +1000
--- oss.py	2023-06-04 11:23:14.243068690 +1000
***************
*** 143,148 ****
--- 143,155 ----
  
                  if oss_index_component.vulnerabilities:
                      for oic_vulnerability in oss_index_component.vulnerabilities:
+ 
+                         # FIXME dpd
+                         if oic_vulnerability.cwe == 'CWE-noinfo':
+                             print(f'oci_vulnerability {oic_vulnerability}')
+                             print(f'cwe {oic_vulnerability.cwe}')
+                             oic_vulnerability.cwe = None
+ 
                          ratings: List[VulnerabilityRating] = []
                          if oic_vulnerability.cvss_score:
                              ratings.append(

Relevant output

oci_vulnerability <Vulnerability id=CVE-2023-32681, name=CVE-2023-32681, cvss_score=6.1>
cwe CWE-noinfo

bhamail · 2023-06-05T14:53:31Z

@ddowling Does this still occur when using Jake 3.0.1?

ddowling · 2023-06-05T23:48:52Z

@bhamail I checked again this morning and the problem has fixed itself for Jake 3.0.0 and CVE-2023-31047. It seems over night the CWE-ID on this vulnerability was changed from "CWE-noinfo" to "CWE-20". That had me scratching my head for a while. The changing CWE values could explain why this issue was difficult to reproduce.
Jake 3.0.1 is also working fine. Looking at the code changes I suspect catching the ValueError exception when converting CWE to an integer will stop this problem from occurring again.

jkaewprateep · 2023-07-09T05:54:51Z

I have the same problem in the training lab from Cousera, the pip upgrade manual ( -m ) in Python 3.8 in the Python directory fixed it.

DavidGietka-NOAA added the bug Something isn't working label Mar 13, 2023

madpah added the triage Under triage label Mar 16, 2023

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[BUG] jake ddt fails with ValueError: invalid literal for int() with base 10: 'noinfo' - both v2.1.1 and v3 #132

[BUG] jake ddt fails with ValueError: invalid literal for int() with base 10: 'noinfo' - both v2.1.1 and v3 #132

DavidGietka-NOAA commented Mar 13, 2023

madpah commented Mar 16, 2023

madpah commented Mar 16, 2023

DavidGietka-NOAA commented Mar 16, 2023 •

edited by madpah

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DavidGietka-NOAA commented Mar 16, 2023

1-some commented Mar 23, 2023

bijuli74 commented May 7, 2023

ddowling commented Jun 4, 2023

bhamail commented Jun 5, 2023

ddowling commented Jun 5, 2023

jkaewprateep commented Jul 9, 2023

[BUG] jake ddt fails with ValueError: invalid literal for int() with base 10: 'noinfo' - both v2.1.1 and v3 #132

[BUG] jake ddt fails with ValueError: invalid literal for int() with base 10: 'noinfo' - both v2.1.1 and v3 #132

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