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pixi.toml
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pixi.toml
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[project]
name = "branchwater"
channels = ["conda-forge", "bioconda"]
platforms = ["linux-64", "osx-64", "osx-arm64"]
[environments]
build = ["build"]
prepare = ["build", "prepare"]
deploy = ["deploy"]
test = ["test"]
[dependencies]
python = ">=3.12.2,<3.13"
[feature.build.dependencies]
rust = ">=1.80.1,<1.81"
compilers = ">=1.7.0,<1.8"
clangdev = ">=16.0.6,<17.1"
libclang = ">=16.0.6,<17.1"
[feature.build.tasks]
build-server = "cargo build --release -p branchwater-server"
[feature.prepare.tasks]
index = { cmd = ["snakemake"], cwd = "experiments" }
metadata = "docker compose exec mongodb python3 /docker-entrypoint-initdb.d/bqtomongo.py"
[feature.prepare.dependencies]
snakemake = ">=8.5.3,<8.6"
pandas = ">=2.2.1,<2.3"
sourmash = ">=4.8.6,<4.9"
[feature.deploy.dependencies]
podman-compose = ">=1.0.6,<1.1"
[feature.deploy.tasks]
deploy = "docker compose"
[feature.test.dependencies]
tox = ">=3.24.5,<4.14"
[feature.test.tasks]
docs = { cmd = ["tox", "-e", "docs"] }