From 14c6729e030571c2d4f824c128a8bce21f623c28 Mon Sep 17 00:00:00 2001
From: Hatice Karatay <66814693+haticekaratay@users.noreply.github.com>
Date: Tue, 12 Sep 2023 14:07:53 -0400
Subject: [PATCH] Address dependency issues on transit spectrosc nb (#146)

---
 .../Exoplanet_Transmission_Spectra_JWST.ipynb    |  8 ++++----
 .../requirements.txt                             | 16 ++++++++--------
 2 files changed, 12 insertions(+), 12 deletions(-)

diff --git a/notebooks/transit_spectroscopy_notebook/Exoplanet_Transmission_Spectra_JWST.ipynb b/notebooks/transit_spectroscopy_notebook/Exoplanet_Transmission_Spectra_JWST.ipynb
index 2e7c28876..29ae67c92 100644
--- a/notebooks/transit_spectroscopy_notebook/Exoplanet_Transmission_Spectra_JWST.ipynb
+++ b/notebooks/transit_spectroscopy_notebook/Exoplanet_Transmission_Spectra_JWST.ipynb
@@ -293,13 +293,13 @@
     "plt.cmap = plt.cm.magma\n",
     "plt.cmap.set_bad('k',1.)\n",
     "plt.rcParams['image.cmap'] = 'magma'                   # Colormap.\n",
-    "plt.rcParams['image.interpolation'] = None\n",
+    "plt.rcParams['image.interpolation'] = 'none'\n",
     "plt.rcParams['image.origin'] = 'lower'\n",
     "plt.rcParams['font.family'] = \"monospace\"\n",
     "plt.rcParams['font.monospace'] = 'DejaVu Sans Mono'\n",
     "\n",
     "img=all_spec[:,:,expnum]\n",
-    "zeros=np.where(img <= 0)     #Plot on a log scale, so set zero or negitive values to a small number \n",
+    "zeros=np.where(img <= 0)     #Plot on a log scale, so set zero or negative values to a small number \n",
     "img[zeros]=1E-10\n",
     "fig,axs = plt.subplots()\n",
     "f=axs.imshow(np.log10(img),vmin=0) #Plot image\n",
@@ -357,7 +357,7 @@
     "plt.cmap = plt.cm.magma\n",
     "plt.cmap.set_bad('k',1.)\n",
     "plt.rcParams['image.cmap'] = 'magma'                   # Colormap.\n",
-    "plt.rcParams['image.interpolation'] = None\n",
+    "plt.rcParams['image.interpolation'] = 'none'\n",
     "plt.rcParams['image.origin'] = 'lower'\n",
     "plt.rcParams['font.family'] = \"monospace\"\n",
     "plt.rcParams['font.monospace'] = 'DejaVu Sans Mono'\n",
@@ -1696,7 +1696,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.8.10"
+   "version": "3.11.5"
   }
  },
  "nbformat": 4,
diff --git a/notebooks/transit_spectroscopy_notebook/requirements.txt b/notebooks/transit_spectroscopy_notebook/requirements.txt
index 49b370a6d..243d0e235 100644
--- a/notebooks/transit_spectroscopy_notebook/requirements.txt
+++ b/notebooks/transit_spectroscopy_notebook/requirements.txt
@@ -1,8 +1,8 @@
-lmfit==1.0.0
-scikit-learn==0.22.1
-numpy==1.18.1
-scipy==1.4.1
-joblib==0.14.1
-matplotlib==3.3.1
-astropy==4.0.1.post1
-pandas==1.1.2
+lmfit==1.2.2
+scikit-learn==1.3.0
+numpy==1.25.2
+scipy==1.11.2
+joblib==1.3.2
+matplotlib==3.7.3
+astropy==5.3.3
+pandas==2.1.0