Remove deprecated notebooks (#225)

Author: haticekaratay

_toc.yml

@@ -49,22 +49,12 @@ parts:
       title: RGB images with Imviz
     - file: notebooks/specviz_notebookGUI_interaction/specviz_notebook_gui_interaction_redshift.ipynb
       title: Specviz Simple Demo
-    #- file: notebooks/cube_fitting/cube_fitting.ipynb
-    # title: IFU Cube Line Maps
   - caption: MIRI
     chapters:
-    #- file: notebooks/example_notebook
-    #  title: TEST SECTION
-    #  sections:
-    #    - file: notebooks/example_notebook/example_notebook.ipynb
-    #      title: Section 1
     - file: notebooks/MRS_Mstar_analysis/JWST_Mstar_dataAnalysis_runpipeline.ipynb
       title: MRS Mstar - Run Pipeline
     - file: notebooks/MRS_Mstar_analysis/JWST_Mstar_dataAnalysis_PointSourceDetectorBasedExtraction.ipynb
       title: MRS Mstar - Optimal Extraction
-      #sections:
-      #- file: notebooks/MRS_Mstar_analysis/JWST_Mstar_dataAnalysis_runpipeline.ipynb
-      #  title: Run Pipeline
     - file: notebooks/MRS_Mstar_analysis/JWST_Mstar_dataAnalysis_analysis.ipynb
       title: MRS Mstar - Data Analysis
     - file: notebooks/MIRI_IFU_YSOs_in_the_LMC/isha_nayak_ysos_in_the_lmc.ipynb
@@ -81,23 +71,10 @@ parts:
       title: Cross-Filter PSF Matching
     - file: notebooks/psf_photometry/NIRCam_PSF_Photometry_Example.ipynb
       title: PSF Photometry
-    #- file: https://github.com/spacetelescope/jdat_notebooks/tree/main/notebooks/preimaging
-    #  title: Preimaging - MIRAGE
-      #sections:
-    #- file: notebooks/preimaging/preimaging_01_mirage.ipynb
-    #  title: Preimaging - MIRAGE
-    #- file: notebooks/preimaging/preimaging_02_calwebb.ipynb
-    #  title: Preimaging - Pipeline Stages 1, 2
-    #- file: notebooks/preimaging/preimaging_03_association.ipynb
-    #  title: Preimaging - Pipeline Stage 3
   - caption: NIRISS
     chapters:
     - file: notebooks/NIRISS_WFSS_postpipeline/00_Optimal_extraction.ipynb
       title: WFSS Spectra - Optimal Extraction
-      #sections:
-      #- file: notebooks/NIRISS_WFSS_postpipeline/00. Optimal extraction.ipynb
-      #  title: WFSS Spectra - Optimal Extraction
-      #  00_Optimal_extraction.ipynb			01_Combine_and_normalize_1D_spectra.ipynb	02_Cross_correlation_template.ipynb		03_Spatially_resolved_emission_line_map.ipynb
     - file: notebooks/NIRISS_WFSS_postpipeline/01_Combine_and_normalize_1D_spectra.ipynb
       title: WFSS Spectra - Combine and Normalize 1D Spectra
     - file: notebooks/NIRISS_WFSS_postpipeline/02_Cross_correlation_template.ipynb 
@@ -106,15 +83,7 @@ parts:
       title: WFSS Spectra - Emission Line Map
     - file: notebooks/niriss_imaging/niriss-imaging-tutorial.ipynb
       title: NIRISS Imaging Tutorial
-    #- file: notebooks/niriss_ami_binary/1_niriss_ami_binary.ipynb
-    #  title: AMI - MIRAGE
-      #sections:
-      #- file: notebooks/niriss_ami_binary/1_niriss_ami_binary.ipynb
-      #  title: Notebook 1
-    #- file: notebooks/niriss_ami_binary/2_niriss_ami_binary.ipynb
-    #  title:  AMI - Pipeline
-    #- file: notebooks/soss-transit-spectroscopy/HAT-P-1b-PART3-data-analysis.ipynb
-    #  title: SOSS Transit Spectroscopy
+
   - caption: NIRSpec
     chapters:
     - file: notebooks/IFU_cube_continuum_fit/NGC4151_FeII_ContinuumFit.ipynb