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README.html
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body {
box-sizing: border-box;
min-width: 200px;
max-width: 980px;
margin: 0 auto;
padding: 45px;
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}
</style>
</head>
<body>
<p>Philipp Baumann ( <a href="mailto:[email protected]">[email protected]</a> | <a href="mailto:[email protected]">[email protected]</a>). Last update: 2022-07-12</p>
<h1 id="overview">Overview</h1>
<p>This repo shares the raw (binary), parsed and processed spectra used to develop the general models of the Swiss mid-infrared (mid-IR) soil spectral library (SSL) in version 1. The spectral measurements and modeling were done at the <a href="https://sae.ethz.ch/">Sustainable Agroecosystems Group</a> at ETH Zürich. The data and hands-on were compiled at the <a href="https://ccsols.ch/">Swiss Competence Center for Soils (KOBO)</a>. This work was done as a PhD project, in collaboration with the <a href="https://www.agroscope.admin.ch/agroscope/en/home/topics/environment-resources/soil-bodies-water-nutrients/nabo.html">Swiss Soil Monitoring group (NABO)</a> at Agroscope. The associated laboratory analytical reference data needs to be requested from NABO.This version comes along with this open-access publication:</p>
<p>Baumann, P., Helfenstein, A., Gubler, A., Keller, A., Meuli, R. G., Wächter, D., Lee, J., Viscarra Rossel, R., & Six, J. (2021). Developing the Swiss mid-infrared soil spectral library for local estimation and monitoring. SOIL, 7(2), 525–546. <a href="https://doi.org/10.5194/soil-7-525-2021">https://doi.org/10.5194/soil-7-525-2021</a></p>
<h1 id="how-to-fetch-and-use-the-data">How to fetch and use the data</h1>
<p>Because this repository contains both binaries (OPUS files with spectra), and large files (> 100MB), the relevant data are stored on GitHub via Large File Storage (LFS).</p>
<p>On Linux, either install git-lfs with your supported package manager, or follow the <a href="https://git-lfs.github.com/">instructions on the official Git Large File Storage page</a>. On Debian, you can just use:</p>
<div class="sourceCode" id="cb1"><pre class="sourceCode bash"><code class="sourceCode bash"><a class="sourceLine" id="cb1-1" title="1"><span class="fu">sudo</span> apt install git-lfs</a></code></pre></div>
<p>On MacOS, you can use <a href="https://formulae.brew.sh/formula/git-lfs">Homebrew</a>:</p>
<div class="sourceCode" id="cb2"><pre class="sourceCode bash"><code class="sourceCode bash"><a class="sourceLine" id="cb2-1" title="1"><span class="ex">brew</span> install git-lfs</a></code></pre></div>
<p>On Windows, you can follow the instructions <a href="https://docs.github.com/en/repositories/working-with-files/managing-large-files/installing-git-large-file-storage">here</a>, where you are referred to download and execute the <code>.exe</code> file provided <a href="https://git-lfs.github.com/">here</a> (installer).</p>
<p>To enable it for your local user, you need to only type once to activate LFS on your system:</p>
<div class="sourceCode" id="cb3"><pre class="sourceCode bash"><code class="sourceCode bash"><a class="sourceLine" id="cb3-1" title="1"><span class="fu">git</span> lfs install</a></code></pre></div>
<p>After this, you are ready to clone this repository, whereby git will resolve and download all large files via LFS.</p>
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