From 9c40d60e0eb381439e4155e8117641f4b4104ac6 Mon Sep 17 00:00:00 2001 From: spiros Date: Sun, 11 Aug 2019 11:29:15 +0800 Subject: [PATCH] Removed Read codes for possible diagnoses that were not used in phenotype algorithms for B12 deficiency anaemia, iron deficiency anaemia and folate deficiency anaemia --- README.md | 78 ++++++++++++++++++++++-- primary_care/CPRD_B12def.csv | 83 ++++++++++--------------- primary_care/CPRD_IDA.csv | 52 ++++++---------- primary_care/CPRD_folatedef.csv | 104 ++++---------------------------- 4 files changed, 137 insertions(+), 180 deletions(-) diff --git a/README.md b/README.md index 6d736f1..3b540cf 100644 --- a/README.md +++ b/README.md @@ -1525,8 +1525,21 @@ OR Secondary care (ICD10) 1. ALL diagnoses of Folate deficiency anaemia or history of diagnosis during a hospitalization -

Primary care (Clinical Practice Research Datalink)

-
Read codeRead term
C262000Folic acid deficiency
D01..00Other deficiency anaemias
D01..11Megaloblastic anaemia
D012100Folate-deficiency anaemia due to dietary causes
D012111Goat's milk anaemia
D012112Megaloblastic anaemia due to dietary causes
D012200Folate-deficiency anaemia, drug induced
D012300Folate-deficiency anaemia due to malabsorption
D012400Folate-deficiency anaemia due to liver disorders
D012500Macrocytic anaemia unspecified cause
D012.00Folate-deficiency anaemia
D012.11Folic acid deficiency anaemia
D012z00Folate-deficiency anaemia NOS
D013000Combined B12 and folate deficiency anaemia
D013.00Other specified megaloblastic anaemia NEC
D013z00Other specified megaloblastic anaemia NEC NOS
D01y.00Other specified nutritional deficiency anaemia
D01yy00Other specified other nutritional deficiency anaemia
D01yz00Other specified nutritional deficiency anaemia NOS
D01z000[X]Megaloblastic anaemia NOS
D01z.00Other deficiency anaemias NOS
D01z.11Megaloblastic anaemia NOS
D0...00Deficiency anaemias
D0y..00Other specified deficiency anaemias
D0z..00Deficiency anaemias NOS
D21z.13Macrocytic anaemia of unspecified cause
Dyu0300[X]Other folate deficiency anaemias
Dyu0.00[X]Nutritional anaemias

Secondary care diagnoses (Hospital Episode Statistics)

+

Primary care (Clinical Practice Research Datalink)

+ + + + + + + + + + + + +
ReadcodeReadterm
C262000Folic acid deficiency
D012100Folate-deficiency anaemia due to dietary causes
D012111Goat's milk anaemia
D012200"Folate-deficiency anaemia
D012300Folate-deficiency anaemia due to malabsorption
D012400Folate-deficiency anaemia due to liver disorders
D012.00Folate-deficiency anaemia
D012.11Folic acid deficiency anaemia
D012z00Folate-deficiency anaemia NOS
D013000Combined B12 and folate deficiency anaemia
Dyu0300[X]Other folate deficiency anaemias
+

Secondary care diagnoses (Hospital Episode Statistics)

ICD10 codeICD10 term
D52Folate deficiency anaemia
@@ -2158,8 +2171,28 @@ OR Secondary care (ICD10) 1. ALL diagnoses of Iron deficiency anaemia or history of diagnosis during a hospitalization -

Primary care (Clinical Practice Research Datalink)

-
Read codeRead term
D000.00Iron deficiency anaemia due to chronic blood loss
D000.11Normocytic anaemia due to chronic blood loss
D000.12Iron deficiency anaemia due to blood loss
D001.00Iron deficiency anaemia due to dietary causes
D00..00Iron deficiency anaemias
D00..11Hypochromic - microcytic anaemia
D00..12Microcytic - hypochromic anaemia
D00y000Sideropenic dysphagia
D00y011Kelly-Paterson syndrome
D00y012Plummer-Vinson syndrome
D00y100Microcytic hypochromic anaemia
D00y.00Other specified iron deficiency anaemia
D00y.11Kelly - Paterson syndrome
D00y.12Plummer - Vinson syndrome
D00yz00Other specified iron deficiency anaemia NOS
D00z000Achlorhydric anaemia
D00z100Chlorotic anaemia
D00z200Idiopathic hypochromic anaemia
D00z.00Unspecified iron deficiency anaemia
D00zz00Iron deficiency anaemia NOS
D01..00Other deficiency anaemias
D01z.00Other deficiency anaemias NOS
D0...11Asiderotic anaemia
D0...12Sideropenic anaemia
D0...00Deficiency anaemias
D0y..00Other specified deficiency anaemias
D0z..00Deficiency anaemias NOS
D01yy00Other specified other nutritional deficiency anaemia
D01yz00Other specified nutritional deficiency anaemia NOS
Dyu0000[X]Other iron deficiency anaemias
Dyu0.00[X]Nutritional anaemias

Secondary care diagnoses (Hospital Episode Statistics)

+

Primary care (Clinical Practice Research Datalink)

+ + + + + + + + + + + + + + + + + + + + +
ReadcodeReadterm
D000.00Iron deficiency anaemia due to chronic blood loss
D000.11Normocytic anaemia due to chronic blood loss
D000.12Iron deficiency anaemia due to blood loss
D001.00Iron deficiency anaemia due to dietary causes
D00..00Iron deficiency anaemias
D00y000Sideropenic dysphagia
D00y011Kelly-Paterson syndrome
D00y012Plummer-Vinson syndrome
D00y.00Other specified iron deficiency anaemia
D00y.11Kelly - Paterson syndrome
D00y.12Plummer - Vinson syndrome
D00yz00Other specified iron deficiency anaemia NOS
D00z000Achlorhydric anaemia
D00z100Chlorotic anaemia
D00z.00Unspecified iron deficiency anaemia
D00zz00Iron deficiency anaemia NOS
D0...11Asiderotic anaemia
D0...12Sideropenic anaemia
Dyu0000[X]Other iron deficiency anaemias

Secondary care diagnoses (Hospital Episode Statistics)

ICD10 codeICD10 term
D50Iron deficiency anaemia
@@ -4917,8 +4950,41 @@ OR Secondary care (ICD10) 1. ALL diagnoses of Vitamin B12 deficiency anaemia or history of diagnosis during a hospitalization -

Primary care (Clinical Practice Research Datalink)

-
Read codeRead term
1452.00H/O: Anaemia vit.B12 deficient
66E1.00B12 defic. initial assessment
66E2.00B12 defic.follow-up assessment
66E3.00B12 injections started
66E4.00B12 injections - at home
66E5.00B12 injections - at surgery
66E6.00Reticulcytosis after B12
66E..00B12 deficiency monitoring
66E7.00B12 def.-dubious diag.criteria
66E8.00B12 injections stopped
66EZ.00B12 defic. monitoring NOS
C262100Vitamin B12 deficiency
D010.00Pernicious anaemia
D010.11Addison's anaemia
D010.12Biermer's congenital pernicious anaemia
D010.13Congenital deficiency of intrinsic factor
D011000Vitamin B12 deficiency anaemia due to dietary causes
D011011Imerslund - Grasbeck syndrome
D011013Vegan's anaemia
D011100Vit B12 defic anaemia due to malabsorption with proteinuria
D011200Transcobalamin II deficiency
D011.00Other vitamin B12 deficiency anaemias
D011.11Vitamin B12 deficiency anaemia
D011X00Vitamin B12 deficiency anaemia, unspecified
D011z00Other vitamin B12 deficiency anaemia NOS
D01..00Other deficiency anaemias
D01..11Megaloblastic anaemia
D012112Megaloblastic anaemia due to dietary causes
D012500Macrocytic anaemia unspecified cause
D013000Combined B12 and folate deficiency anaemia
D013.00Other specified megaloblastic anaemia NEC
D013z00Other specified megaloblastic anaemia NEC NOS
D01y.00Other specified nutritional deficiency anaemia
D01yy00Other specified other nutritional deficiency anaemia
D01yz00Other specified nutritional deficiency anaemia NOS
D01z000[X]Megaloblastic anaemia NOS
D01z.00Other deficiency anaemias NOS
D01z.11Megaloblastic anaemia NOS
D0...00Deficiency anaemias
D0y..00Other specified deficiency anaemias
D0z..00Deficiency anaemias NOS
D21z.13Macrocytic anaemia of unspecified cause
Dyu0100[X]Other dietary vitamin B12 deficiency anaemia
Dyu0200[X]Other vitamin B12 deficiency anaemias
Dyu0600[X]Vitamin B12 deficiency anaemia, unspecified
Dyu0.00[X]Nutritional anaemias
F11x600Cerebral degeneration due to vitamin B12 deficiency
F162.00Subacute combined degeneration of spinal cord
F381500Myasthenic syndrome due to pernicious anaemia

Secondary care diagnoses (Hospital Episode Statistics)

+

Primary care (Clinical Practice Research Datalink)

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
ReadcodeReadterm
1452H/O: Anaemia vit.B12 deficient
66E1.00B12 defic. initial assessment
66E2.00B12 defic.follow-up assessment
66E3.00B12 injections started
66E4.00B12 injections - at home
66E5.00B12 injections - at surgery
66E6.00Reticulcytosis after B12
66E..00B12 deficiency monitoring
66E7.00B12 def.-dubious diag.criteria
66E8.00B12 injections stopped
66EZ.00B12 defic. monitoring NOS
C262100Vitamin B12 deficiency
D010.00Pernicious anaemia
D010.11Addison's anaemia
D010.12Biermer's congenital pernicious anaemia
D010.13Congenital deficiency of intrinsic factor
D011000Vitamin B12 deficiency anaemia due to dietary causes
D011011Imerslund - Grasbeck syndrome
D011013Vegan's anaemia
D011100Vit B12 defic anaemia due to malabsorption with proteinuria
D011200Transcobalamin II deficiency
D011.00Other vitamin B12 deficiency anaemias
D011.11Vitamin B12 deficiency anaemia
D011X00"Vitamin B12 deficiency anaemia
D011z00Other vitamin B12 deficiency anaemia NOS
D013000Combined B12 and folate deficiency anaemia
Dyu0100[X]Other dietary vitamin B12 deficiency anaemia
Dyu0200[X]Other vitamin B12 deficiency anaemias
Dyu0600"[X]Vitamin B12 deficiency anaemia
F11x600Cerebral degeneration due to vitamin B12 deficiency
F162.00Subacute combined degeneration of spinal cord
F381500Myasthenic syndrome due to pernicious anaemia

Secondary care diagnoses (Hospital Episode Statistics)

ICD10 codeICD10 term
D51Vitamin B12 deficiency anaemia
diff --git a/primary_care/CPRD_B12def.csv b/primary_care/CPRD_B12def.csv index ba846b2..2971171 100644 --- a/primary_care/CPRD_B12def.csv +++ b/primary_care/CPRD_B12def.csv @@ -1,50 +1,33 @@ -"Disease","Read code","Medcode","Descr","Category" -"Vitamin B12 deficiency anaemia","1452.00","54738.0","H/O: Anaemia vit.B12 deficient","History of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","66E1.00","11126.0","B12 defic. initial assessment","Vitamin B12 deficiency" -"Vitamin B12 deficiency anaemia","66E2.00","8013.0","B12 defic.follow-up assessment","Vitamin B12 deficiency" -"Vitamin B12 deficiency anaemia","66E3.00","31126.0","B12 injections started","Vitamin B12 deficiency" -"Vitamin B12 deficiency anaemia","66E4.00","42928.0","B12 injections - at home","Vitamin B12 deficiency" -"Vitamin B12 deficiency anaemia","66E5.00","12329.0","B12 injections - at surgery","Vitamin B12 deficiency" -"Vitamin B12 deficiency anaemia","66E6.00","66935.0","Reticulcytosis after B12","Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","66E..00","7403.0","B12 deficiency monitoring","Vitamin B12 deficiency" -"Vitamin B12 deficiency anaemia","66E7.00","48714.0","B12 def.-dubious diag.criteria","Vitamin B12 deficiency" -"Vitamin B12 deficiency anaemia","66E8.00","58599.0","B12 injections stopped","Vitamin B12 deficiency" -"Vitamin B12 deficiency anaemia","66EZ.00","36840.0","B12 defic. monitoring NOS","Vitamin B12 deficiency" -"Vitamin B12 deficiency anaemia","C262100","2515.0","Vitamin B12 deficiency","Vitamin B12 deficiency" -"Vitamin B12 deficiency anaemia","D010.00","2464.0","Pernicious anaemia","Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","D010.11","2813.0","Addison's anaemia","Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","D010.12","55370.0","Biermer's congenital pernicious anaemia","Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","D010.13","46289.0","Congenital deficiency of intrinsic factor","Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","D011000","32953.0","Vitamin B12 deficiency anaemia due to dietary causes","Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","D011011","72895.0","Imerslund - Grasbeck syndrome","Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","D011013","69275.0","Vegan's anaemia","Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","D011100","2482.0","Vit B12 defic anaemia due to malabsorption with proteinuria","Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","D011200","62637.0","Transcobalamin II deficiency","Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","D011.00","29486.0","Other vitamin B12 deficiency anaemias","Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","D011.11","5271.0","Vitamin B12 deficiency anaemia","Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","D011X00","6028.0","Vitamin B12 deficiency anaemia, unspecified","Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","D011z00","31270.0","Other vitamin B12 deficiency anaemia NOS","Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","D01..00","11961.0","Other deficiency anaemias","Possible Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","D01..11","4475.0","Megaloblastic anaemia","Possible Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","D012112","59103.0","Megaloblastic anaemia due to dietary causes","Possible Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","D012500","3981.0","Macrocytic anaemia unspecified cause","Possible Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","D013000","22715.0","Combined B12 and folate deficiency anaemia","Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","D013.00","51489.0","Other specified megaloblastic anaemia NEC","Possible Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","D013z00","56348.0","Other specified megaloblastic anaemia NEC NOS","Possible Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","D01y.00","58136.0","Other specified nutritional deficiency anaemia","Possible Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","D01yy00","100576.0","Other specified other nutritional deficiency anaemia","Possible Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","D01yz00","92106.0","Other specified nutritional deficiency anaemia NOS","Possible Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","D01z000","10506.0","[X]Megaloblastic anaemia NOS","Possible Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","D01z.00","57274.0","Other deficiency anaemias NOS","Possible Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","D01z.11","53799.0","Megaloblastic anaemia NOS","Possible Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","D0...00","7841.0","Deficiency anaemias","Possible Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","D0y..00","26327.0","Other specified deficiency anaemias","Possible Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","D0z..00","8054.0","Deficiency anaemias NOS","Possible Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","D21z.13","797.0","Macrocytic anaemia of unspecified cause","Possible Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","Dyu0100","47952.0","[X]Other dietary vitamin B12 deficiency anaemia","Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","Dyu0200","35092.0","[X]Other vitamin B12 deficiency anaemias","Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","Dyu0600","53846.0","[X]Vitamin B12 deficiency anaemia, unspecified","Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","Dyu0.00","71840.0","[X]Nutritional anaemias","Possible Diagnosis of Vitamin B12 deficiency anaemia" -"Vitamin B12 deficiency anaemia","F11x600","24581.0","Cerebral degeneration due to vitamin B12 deficiency","Vitamin B12 deficiency" -"Vitamin B12 deficiency anaemia","F162.00","7736.0","Subacute combined degeneration of spinal cord","Vitamin B12 deficiency" -"Vitamin B12 deficiency anaemia","F381500","56973.0","Myasthenic syndrome due to pernicious anaemia","Diagnosis of Vitamin B12 deficiency anaemia" +Disease,Read code,Medcode,Descr,Category +Vitamin B12 deficiency anaemia,1452,54738,H/O: Anaemia vit.B12 deficient,History of Vitamin B12 deficiency anaemia +Vitamin B12 deficiency anaemia,66E1.00,11126,B12 defic. initial assessment,Vitamin B12 deficiency +Vitamin B12 deficiency anaemia,66E2.00,8013,B12 defic.follow-up assessment,Vitamin B12 deficiency +Vitamin B12 deficiency anaemia,66E3.00,31126,B12 injections started,Vitamin B12 deficiency +Vitamin B12 deficiency anaemia,66E4.00,42928,B12 injections - at home,Vitamin B12 deficiency +Vitamin B12 deficiency anaemia,66E5.00,12329,B12 injections - at surgery,Vitamin B12 deficiency +Vitamin B12 deficiency anaemia,66E6.00,66935,Reticulcytosis after B12,Diagnosis of Vitamin B12 deficiency anaemia +Vitamin B12 deficiency anaemia,66E..00,7403,B12 deficiency monitoring,Vitamin B12 deficiency +Vitamin B12 deficiency anaemia,66E7.00,48714,B12 def.-dubious diag.criteria,Vitamin B12 deficiency +Vitamin B12 deficiency anaemia,66E8.00,58599,B12 injections stopped,Vitamin B12 deficiency +Vitamin B12 deficiency anaemia,66EZ.00,36840,B12 defic. monitoring NOS,Vitamin B12 deficiency +Vitamin B12 deficiency anaemia,C262100,2515,Vitamin B12 deficiency,Vitamin B12 deficiency +Vitamin B12 deficiency anaemia,D010.00,2464,Pernicious anaemia,Diagnosis of Vitamin B12 deficiency anaemia +Vitamin B12 deficiency anaemia,D010.11,2813,Addison's anaemia,Diagnosis of Vitamin B12 deficiency anaemia +Vitamin B12 deficiency anaemia,D010.12,55370,Biermer's congenital pernicious anaemia,Diagnosis of Vitamin B12 deficiency anaemia +Vitamin B12 deficiency anaemia,D010.13,46289,Congenital deficiency of intrinsic factor,Diagnosis of Vitamin B12 deficiency anaemia +Vitamin B12 deficiency anaemia,D011000,32953,Vitamin B12 deficiency anaemia due to dietary causes,Diagnosis of Vitamin B12 deficiency anaemia +Vitamin B12 deficiency anaemia,D011011,72895,Imerslund - Grasbeck syndrome,Diagnosis of Vitamin B12 deficiency anaemia +Vitamin B12 deficiency anaemia,D011013,69275,Vegan's anaemia,Diagnosis of Vitamin B12 deficiency anaemia +Vitamin B12 deficiency anaemia,D011100,2482,Vit B12 defic anaemia due to malabsorption with proteinuria,Diagnosis of Vitamin B12 deficiency anaemia +Vitamin B12 deficiency anaemia,D011200,62637,Transcobalamin II deficiency,Diagnosis of Vitamin B12 deficiency anaemia +Vitamin B12 deficiency anaemia,D011.00,29486,Other vitamin B12 deficiency anaemias,Diagnosis of Vitamin B12 deficiency anaemia +Vitamin B12 deficiency anaemia,D011.11,5271,Vitamin B12 deficiency anaemia,Diagnosis of Vitamin B12 deficiency anaemia +Vitamin B12 deficiency anaemia,D011X00,6028,"Vitamin B12 deficiency anaemia, unspecified",Diagnosis of Vitamin B12 deficiency anaemia +Vitamin B12 deficiency anaemia,D011z00,31270,Other vitamin B12 deficiency anaemia NOS,Diagnosis of Vitamin B12 deficiency anaemia +Vitamin B12 deficiency anaemia,D013000,22715,Combined B12 and folate deficiency anaemia,Diagnosis of Vitamin B12 deficiency anaemia +Vitamin B12 deficiency anaemia,Dyu0100,47952,[X]Other dietary vitamin B12 deficiency anaemia,Diagnosis of Vitamin B12 deficiency anaemia +Vitamin B12 deficiency anaemia,Dyu0200,35092,[X]Other vitamin B12 deficiency anaemias,Diagnosis of Vitamin B12 deficiency anaemia +Vitamin B12 deficiency anaemia,Dyu0600,53846,"[X]Vitamin B12 deficiency anaemia, unspecified",Diagnosis of Vitamin B12 deficiency anaemia +Vitamin B12 deficiency anaemia,F11x600,24581,Cerebral degeneration due to vitamin B12 deficiency,Vitamin B12 deficiency +Vitamin B12 deficiency anaemia,F162.00,7736,Subacute combined degeneration of spinal cord,Vitamin B12 deficiency +Vitamin B12 deficiency anaemia,F381500,56973,Myasthenic syndrome due to pernicious anaemia,Diagnosis of Vitamin B12 deficiency anaemia \ No newline at end of file diff --git a/primary_care/CPRD_IDA.csv b/primary_care/CPRD_IDA.csv index 0ee653a..ef59c4b 100644 --- a/primary_care/CPRD_IDA.csv +++ b/primary_care/CPRD_IDA.csv @@ -1,32 +1,20 @@ -"Disease","Read code","Medcode","Descr","Category" -"Iron deficiency anaemia","D000.00","27726.0","Iron deficiency anaemia due to chronic blood loss","Diagnosis of Iron deficiency anaemia" -"Iron deficiency anaemia","D000.11","6816.0","Normocytic anaemia due to chronic blood loss","Diagnosis of Iron deficiency anaemia" -"Iron deficiency anaemia","D000.12","48338.0","Iron deficiency anaemia due to blood loss","Diagnosis of Iron deficiency anaemia" -"Iron deficiency anaemia","D001.00","21127.0","Iron deficiency anaemia due to dietary causes","Diagnosis of Iron deficiency anaemia" -"Iron deficiency anaemia","D00..00","795.0","Iron deficiency anaemias","Diagnosis of Iron deficiency anaemia" -"Iron deficiency anaemia","D00..11","882.0","Hypochromic - microcytic anaemia","Possible Diagnosis of Iron deficiency anaemia" -"Iron deficiency anaemia","D00..12","539.0","Microcytic - hypochromic anaemia","Possible Diagnosis of Iron deficiency anaemia" -"Iron deficiency anaemia","D00y000","55478.0","Sideropenic dysphagia","Diagnosis of Iron deficiency anaemia" -"Iron deficiency anaemia","D00y011","36965.0","Kelly-Paterson syndrome","Diagnosis of Iron deficiency anaemia" -"Iron deficiency anaemia","D00y012","35199.0","Plummer-Vinson syndrome","Diagnosis of Iron deficiency anaemia" -"Iron deficiency anaemia","D00y100","4839.0","Microcytic hypochromic anaemia","Possible Diagnosis of Iron deficiency anaemia" -"Iron deficiency anaemia","D00y.00","33420.0","Other specified iron deficiency anaemia","Diagnosis of Iron deficiency anaemia" -"Iron deficiency anaemia","D00y.11","31347.0","Kelly - Paterson syndrome","Diagnosis of Iron deficiency anaemia" -"Iron deficiency anaemia","D00y.12","20123.0","Plummer - Vinson syndrome","Diagnosis of Iron deficiency anaemia" -"Iron deficiency anaemia","D00yz00","9537.0","Other specified iron deficiency anaemia NOS","Diagnosis of Iron deficiency anaemia" -"Iron deficiency anaemia","D00z000","19951.0","Achlorhydric anaemia","Diagnosis of Iron deficiency anaemia" -"Iron deficiency anaemia","D00z100","57954.0","Chlorotic anaemia","Diagnosis of Iron deficiency anaemia" -"Iron deficiency anaemia","D00z200","40750.0","Idiopathic hypochromic anaemia","Possible Diagnosis of Iron deficiency anaemia" -"Iron deficiency anaemia","D00z.00","18137.0","Unspecified iron deficiency anaemia","Diagnosis of Iron deficiency anaemia" -"Iron deficiency anaemia","D00zz00","15439.0","Iron deficiency anaemia NOS","Diagnosis of Iron deficiency anaemia" -"Iron deficiency anaemia","D01..00","11961.0","Other deficiency anaemias","Possible Diagnosis of Iron deficiency anaemia" -"Iron deficiency anaemia","D01z.00","57274.0","Other deficiency anaemias NOS","Possible Diagnosis of Iron deficiency anaemia" -"Iron deficiency anaemia","D0...11","94528.0","Asiderotic anaemia","Diagnosis of Iron deficiency anaemia" -"Iron deficiency anaemia","D0...12","19383.0","Sideropenic anaemia","Diagnosis of Iron deficiency anaemia" -"Iron deficiency anaemia","D0...00","7841.0","Deficiency anaemias","Possible Diagnosis of Iron deficiency anaemia" -"Iron deficiency anaemia","D0y..00","26327.0","Other specified deficiency anaemias","Possible Diagnosis of Iron deficiency anaemia" -"Iron deficiency anaemia","D0z..00","8054.0","Deficiency anaemias NOS","Possible Diagnosis of Iron deficiency anaemia" -"Iron deficiency anaemia","D01yy00","100576.0","Other specified other nutritional deficiency anaemia","Possible Diagnosis of Iron deficiency anaemia" -"Iron deficiency anaemia","D01yz00","92106.0","Other specified nutritional deficiency anaemia NOS","Possible Diagnosis of Iron deficiency anaemia" -"Iron deficiency anaemia","Dyu0000","4858.0","[X]Other iron deficiency anaemias","Diagnosis of Iron deficiency anaemia" -"Iron deficiency anaemia","Dyu0.00","71840.0","[X]Nutritional anaemias","Possible Diagnosis of Iron deficiency anaemia" +Disease,Read code,Medcode,Descr,Category +Iron deficiency anaemia,D000.00,27726,Iron deficiency anaemia due to chronic blood loss,Diagnosis of Iron deficiency anaemia +Iron deficiency anaemia,D000.11,6816,Normocytic anaemia due to chronic blood loss,Diagnosis of Iron deficiency anaemia +Iron deficiency anaemia,D000.12,48338,Iron deficiency anaemia due to blood loss,Diagnosis of Iron deficiency anaemia +Iron deficiency anaemia,D001.00,21127,Iron deficiency anaemia due to dietary causes,Diagnosis of Iron deficiency anaemia +Iron deficiency anaemia,D00..00,795,Iron deficiency anaemias,Diagnosis of Iron deficiency anaemia +Iron deficiency anaemia,D00y000,55478,Sideropenic dysphagia,Diagnosis of Iron deficiency anaemia +Iron deficiency anaemia,D00y011,36965,Kelly-Paterson syndrome,Diagnosis of Iron deficiency anaemia +Iron deficiency anaemia,D00y012,35199,Plummer-Vinson syndrome,Diagnosis of Iron deficiency anaemia +Iron deficiency anaemia,D00y.00,33420,Other specified iron deficiency anaemia,Diagnosis of Iron deficiency anaemia +Iron deficiency anaemia,D00y.11,31347,Kelly - Paterson syndrome,Diagnosis of Iron deficiency anaemia +Iron deficiency anaemia,D00y.12,20123,Plummer - Vinson syndrome,Diagnosis of Iron deficiency anaemia +Iron deficiency anaemia,D00yz00,9537,Other specified iron deficiency anaemia NOS,Diagnosis of Iron deficiency anaemia +Iron deficiency anaemia,D00z000,19951,Achlorhydric anaemia,Diagnosis of Iron deficiency anaemia +Iron deficiency anaemia,D00z100,57954,Chlorotic anaemia,Diagnosis of Iron deficiency anaemia +Iron deficiency anaemia,D00z.00,18137,Unspecified iron deficiency anaemia,Diagnosis of Iron deficiency anaemia +Iron deficiency anaemia,D00zz00,15439,Iron deficiency anaemia NOS,Diagnosis of Iron deficiency anaemia +Iron deficiency anaemia,D0...11,94528,Asiderotic anaemia,Diagnosis of Iron deficiency anaemia +Iron deficiency anaemia,D0...12,19383,Sideropenic anaemia,Diagnosis of Iron deficiency anaemia +Iron deficiency anaemia,Dyu0000,4858,[X]Other iron deficiency anaemias,Diagnosis of Iron deficiency anaemia \ No newline at end of file diff --git a/primary_care/CPRD_folatedef.csv b/primary_care/CPRD_folatedef.csv index ca7b4a0..2560906 100644 --- a/primary_care/CPRD_folatedef.csv +++ b/primary_care/CPRD_folatedef.csv @@ -1,92 +1,12 @@ -"Disease","Read code","Medcode","Descr","Category","","","","","","","","","","","","","" -"Folate deficiency anaemia","C262000","4078.0","Folic acid deficiency","Folic acid deficiency","","","","","","","","","","","31214.0","H/O: anaemia - iron deficient","3.0" -"Folate deficiency anaemia","D01..00","11961.0","Other deficiency anaemias","Possible Diagnosis of Folate deficiency anaemia","","","","","","","","","","","","","" -"Folate deficiency anaemia","D01..11","4475.0","Megaloblastic anaemia","Possible Diagnosis of Folate deficiency anaemia","","","","","","","","","","","","","" -"Folate deficiency anaemia","D012100","36634.0","Folate-deficiency anaemia due to dietary causes","Diagnosis of Folate deficiency anaemia","","","","","","","","","","","96959.0","Ant scr show iron defic/poss non signific alpha thalassaemia","0.0" -"Folate deficiency anaemia","D012111","98709.0","Goat's milk anaemia","Diagnosis of Folate deficiency anaemia","","","","","","","","","","","5619.0","Iron deficiency","2b" -"Folate deficiency anaemia","D012112","59103.0","Megaloblastic anaemia due to dietary causes","Possible Diagnosis of Folate deficiency anaemia","","","","","","","","","","","27726.0","Iron deficiency anaemia due to chronic blood loss","1.0" -"Folate deficiency anaemia","D012200","37082.0","Folate-deficiency anaemia, drug induced","Diagnosis of Folate deficiency anaemia","","","","","","","","","","","6816.0","Normocytic anaemia due to chronic blood loss","1.0" -"Folate deficiency anaemia","D012300","55481.0","Folate-deficiency anaemia due to malabsorption","Diagnosis of Folate deficiency anaemia","","","","","","","","","","","48338.0","Iron deficiency anaemia due to blood loss","1.0" -"Folate deficiency anaemia","D012400","56114.0","Folate-deficiency anaemia due to liver disorders","Diagnosis of Folate deficiency anaemia","","","","","","","","","","","21127.0","Iron deficiency anaemia due to dietary causes","1.0" -"Folate deficiency anaemia","D012500","3981.0","Macrocytic anaemia unspecified cause","Possible Diagnosis of Folate deficiency anaemia","","","","","","","","","","","795.0","Iron deficiency anaemias","1.0" -"Folate deficiency anaemia","D012.00","4080.0","Folate-deficiency anaemia","Diagnosis of Folate deficiency anaemia","","","","","","","","","","","882.0","Hypochromic - microcytic anaemia","2a" -"Folate deficiency anaemia","D012.11","24870.0","Folic acid deficiency anaemia","Diagnosis of Folate deficiency anaemia","","","","","","","","","","","539.0","Microcytic - hypochromic anaemia","2a" -"Folate deficiency anaemia","D012z00","42117.0","Folate-deficiency anaemia NOS","Diagnosis of Folate deficiency anaemia","","","","","","","","","","","55478.0","Sideropenic dysphagia","1.0" -"Folate deficiency anaemia","D013000","22715.0","Combined B12 and folate deficiency anaemia","Diagnosis of Folate deficiency anaemia","","","","","","","","","","","36965.0","Kelly-Paterson syndrome","1.0" -"Folate deficiency anaemia","D013.00","51489.0","Other specified megaloblastic anaemia NEC","Possible Diagnosis of Folate deficiency anaemia","","","","","","","","","","","","","" -"Folate deficiency anaemia","D013z00","56348.0","Other specified megaloblastic anaemia NEC NOS","Possible Diagnosis of Folate deficiency anaemia","","","","","","","","","","","","","" -"Folate deficiency anaemia","D01y.00","58136.0","Other specified nutritional deficiency anaemia","Possible Diagnosis of Folate deficiency anaemia","","","","","","","","","","","","","" -"Folate deficiency anaemia","D01yy00","100576.0","Other specified other nutritional deficiency anaemia","Possible Diagnosis of Folate deficiency anaemia","","","","","","","","","","","","","" -"Folate deficiency anaemia","D01yz00","92106.0","Other specified nutritional deficiency anaemia NOS","Possible Diagnosis of Folate deficiency anaemia","","","","","","","","","","","","","" -"Folate deficiency anaemia","D01z000","10506.0","[X]Megaloblastic anaemia NOS","Possible Diagnosis of Folate deficiency anaemia","","","","","","","","","","","","","" -"Folate deficiency anaemia","D01z.00","57274.0","Other deficiency anaemias NOS","Possible Diagnosis of Folate deficiency anaemia","","","","","","","","","","","","","" -"Folate deficiency anaemia","D01z.11","53799.0","Megaloblastic anaemia NOS","Possible Diagnosis of Folate deficiency anaemia","","","","","","","","","","","","","" -"Folate deficiency anaemia","D0...00","7841.0","Deficiency anaemias","Possible Diagnosis of Folate deficiency anaemia","","","","","","","","","","","","","" -"Folate deficiency anaemia","D0y..00","26327.0","Other specified deficiency anaemias","Possible Diagnosis of Folate deficiency anaemia","","","","","","","","","","","","","" -"Folate deficiency anaemia","D0z..00","8054.0","Deficiency anaemias NOS","Possible Diagnosis of Folate deficiency anaemia","","","","","","","","","","","","","" -"Folate deficiency anaemia","D21z.13","797.0","Macrocytic anaemia of unspecified cause","Possible Diagnosis of Folate deficiency anaemia","","","","","","","","","","","","","" -"Folate deficiency anaemia","Dyu0300","53783.0","[X]Other folate deficiency anaemias","Diagnosis of Folate deficiency anaemia","","","","","","","","","","","4839.0","Microcytic hypochromic anaemia","2a" -"Folate deficiency anaemia","Dyu0.00","71840.0","[X]Nutritional anaemias","Possible Diagnosis of Folate deficiency anaemia","","","","","","","","","","","33420.0","Other specified iron deficiency anaemia","1.0" -"","","","","","","","","","","","","","","","31347.0","Kelly - Paterson syndrome","1.0" -"","","","","","","","","","","","","","","","20123.0","Plummer - Vinson syndrome","1.0" -"","","","","","","","","","","","","","","","9537.0","Other specified iron deficiency anaemia NOS","1.0" -"","","","","","","","","","","","","","","","19951.0","Achlorhydric anaemia","1.0" -"","","","","","","","","","","","","","","","57954.0","Chlorotic anaemia","1.0" -"","","","","","","","","","","","","","","","40750.0","Idiopathic hypochromic anaemia","2a" -"","","","","","","","","","","","","","","","18137.0","Unspecified iron deficiency anaemia","1.0" -"","","","","","","","","","","","","","","","15439.0","Iron deficiency anaemia NOS","1.0" -"","","","","","","","","","","","","","","","94528.0","Asiderotic anaemia","1.0" -"","","","","","","","","","","","","","","","2743.0","Acute posthaemorrhagic anaemia","0.0" -"","","","","","","","","","","","","","","","12176.0","Chronic anaemia","0.0" -"","","","","","","","","","","","","","","","4858.0","[X]Other iron deficiency anaemias","1.0" -"","","","","","","","","","","","","","","","1668.0","Iron deficiency anaemia of pregnancy","5.0" -"","","","","","","","","","","","","","","","54738.0","H/O: Anaemia vit.B12 deficient","3.0" -"","","","","","","","","","","","","","","","11126.0","B12 defic. initial assessment","2.0" -"","","","","","","","","","","","","","","","8013.0","B12 defic.follow-up assessment","2.0" -"","","","","","","","","","","","","","","","31126.0","B12 injections started","2.0" -"","","","","","","","","","","","","","","","42928.0","B12 injections - at home","2.0" -"","","","","","","","","","","","","","","","12329.0","B12 injections - at surgery","2.0" -"","","","","","","","","","","","","","","","66935.0","Reticulcytosis after B12","1.0" -"","","","","","","","","","","","","","","","7403.0","B12 deficiency monitoring","2.0" -"","","","","","","","","","","","","","","","48714.0","B12 def.-dubious diag.criteria","2.0" -"","","","","","","","","","","","","","","","58599.0","B12 injections stopped","2.0" -"","","","","","","","","","","","","","","","36840.0","B12 defic. monitoring NOS","2.0" -"","","","","","","","","","","","","","","","2515.0","Vitamin B12 deficiency","2.0" -"","","","","","","","","","","","","","","","2464.0","Pernicious anaemia","1.0" -"","","","","","","","","","","","","","","","2813.0","Addison's anaemia","1.0" -"","","","","","","","","","","","","","","","55370.0","Biermer's congenital pernicious anaemia","1.0" -"","","","","","","","","","","","","","","","46289.0","Congenital deficiency of intrinsic factor","1.0" -"","","","","","","","","","","","","","","","32953.0","Vitamin B12 deficiency anaemia due to dietary causes","1.0" -"","","","","","","","","","","","","","","","72895.0","Imerslund - Grasbeck syndrome","1.0" -"","","","","","","","","","","","","","","","69275.0","Vegan's anaemia","1.0" -"","","","","","","","","","","","","","","","2482.0","Vit B12 defic anaemia due to malabsorption with proteinuria","1.0" -"","","","","","","","","","","","","","","","62637.0","Transcobalamin II deficiency","1.0" -"","","","","","","","","","","","","","","","29486.0","Other vitamin B12 deficiency anaemias","1.0" -"","","","","","","","","","","","","","","","5271.0","Vitamin B12 deficiency anaemia","1.0" -"","","","","","","","","","","","","","","","6028.0","Vitamin B12 deficiency anaemia, unspecified","1.0" -"","","","","","","","","","","","","","","","31270.0","Other vitamin B12 deficiency anaemia NOS","1.0" -"","","","","","","","","","","","","","","","22715.0","Combined B12 and folate deficiency anaemia","1.0" -"","","","","","","","","","","","","","","","10506.0","[X]Megaloblastic anaemia NOS","0.0" -"","","","","","","","","","","","","","","","47952.0","[X]Other dietary vitamin B12 deficiency anaemia","1.0" -"","","","","","","","","","","","","","","","35092.0","[X]Other vitamin B12 deficiency anaemias","1.0" -"","","","","","","","","","","","","","","","53783.0","[X]Other folate deficiency anaemias","0.0" -"","","","","","","","","","","","","","","","53846.0","[X]Vitamin B12 deficiency anaemia, unspecified","1.0" -"","","","","","","","","","","","","","","","71840.0","[X]Nutritional anaemias","0.0" -"","","","","","","","","","","","","","","","24581.0","Cerebral degeneration due to vitamin B12 deficiency","2.0" -"","","","","","","","","","","","","","","","7736.0","Subacute combined degeneration of spinal cord","2.0" -"","","","","","","","","","","","","","","","56973.0","Myasthenic syndrome due to pernicious anaemia","1.0" -"","","","","","","","","","","","","","","","4078.0","Folic acid deficiency","2.0" -"","","","","","","","","","","","","","","","36634.0","Folate-deficiency anaemia due to dietary causes","1.0" -"","","","","","","","","","","","","","","","98709.0","Goat's milk anaemia","1.0" -"","","","","","","","","","","","","","","","59103.0","Megaloblastic anaemia due to dietary causes","0.0" -"","","","","","","","","","","","","","","","37082.0","Folate-deficiency anaemia, drug induced","1.0" -"","","","","","","","","","","","","","","","55481.0","Folate-deficiency anaemia due to malabsorption","1.0" -"","","","","","","","","","","","","","","","56114.0","Folate-deficiency anaemia due to liver disorders","1.0" -"","","","","","","","","","","","","","","","3981.0","Macrocytic anaemia unspecified cause","0.0" -"","","","","","","","","","","","","","","","4080.0","Folate-deficiency anaemia","1.0" -"","","","","","","","","","","","","","","","24870.0","Folic acid deficiency anaemia","1.0" -"","","","","","","","","","","","","","","","42117.0","Folate-deficiency anaemia NOS","1.0" -"","","","","","","","","","","","","","","","22715.0","Combined B12 and folate deficiency anaemia","1.0" -"","","","","","","","","","","","","","","","10506.0","[X]Megaloblastic anaemia NOS","0.0" -"","","","","","","","","","","","","","","","53783.0","[X]Other folate deficiency anaemias","1.0" -"","","","","","","","","","","","","","","","71840.0","[X]Nutritional anaemias","0.0" +Disease,Read code,Medcode,Descr,Category +Folate deficiency anaemia,C262000,4078,Folic acid deficiency,Folic acid deficiency +Folate deficiency anaemia,D012100,36634,Folate-deficiency anaemia due to dietary causes,Diagnosis of Folate deficiency anaemia +Folate deficiency anaemia,D012111,98709,Goat's milk anaemia,Diagnosis of Folate deficiency anaemia +Folate deficiency anaemia,D012200,37082,"Folate-deficiency anaemia, drug induced",Diagnosis of Folate deficiency anaemia +Folate deficiency anaemia,D012300,55481,Folate-deficiency anaemia due to malabsorption,Diagnosis of Folate deficiency anaemia +Folate deficiency anaemia,D012400,56114,Folate-deficiency anaemia due to liver disorders,Diagnosis of Folate deficiency anaemia +Folate deficiency anaemia,D012.00,4080,Folate-deficiency anaemia,Diagnosis of Folate deficiency anaemia +Folate deficiency anaemia,D012.11,24870,Folic acid deficiency anaemia,Diagnosis of Folate deficiency anaemia +Folate deficiency anaemia,D012z00,42117,Folate-deficiency anaemia NOS,Diagnosis of Folate deficiency anaemia +Folate deficiency anaemia,D013000,22715,Combined B12 and folate deficiency anaemia,Diagnosis of Folate deficiency anaemia +Folate deficiency anaemia,Dyu0300,53783,[X]Other folate deficiency anaemias,Diagnosis of Folate deficiency anaemia \ No newline at end of file