[Question] Description of the matchin aa column in the output

[celalp]

Hi,

This is a neat tool. I just have a question about the last column of the output (comma separated aa list), the column says matching amino acids but what is is this match based on? Sequence, 3Di?

Thanks

[khb7840]

Thank you for your interest in Folddisco!

By default, Folddisco uses a set of pairwise structural features different from 3Di. These features include:

• Distances between C-alpha and C-beta atoms
• The angle between the C-alpha–C-beta vectors
• Two side-chain torsion angles

Residue matching is performed by identifying connected components in a graph derived from these features.

I'm currently working on updating the documentation soon to provide more details.