diff --git a/README.md b/README.md index c00317f..019f3c9 100644 --- a/README.md +++ b/README.md @@ -41,7 +41,7 @@ ufcg profile -i -o [OPTIONS] ### `tree` UFCG `tree` reconstructs the phylogenetic relationship of the set of marker gene profiles. ~~~bash -ufcg tree -i -l [OPTIONS] +ufcg tree -i -o [OPTIONS] ~~~ ### `train` diff --git a/src/pipeline/UFCGMainPipeline.java b/src/pipeline/UFCGMainPipeline.java index 92eb7e5..813f5a6 100644 --- a/src/pipeline/UFCGMainPipeline.java +++ b/src/pipeline/UFCGMainPipeline.java @@ -36,8 +36,8 @@ @SuppressWarnings("restriction") public class UFCGMainPipeline { - public static final String VERSION = "1.0.3"; - public static final String RELEASE_DATE = "Jan. 2023"; + public static final String VERSION = "1.0.4"; + public static final String RELEASE_DATE = "May 2023"; public static final String CITATION = " Kim, D., Gilchrist, C.L.M., Chun, J. & Steinegger, M. (2023)\n" + " UFCG: database of universal fungal core genes and pipeline for genome-wide phylogenetic analysis of fungi.\n" + " Nucleic Acids Research, 51(D1), D777-D784, doi:10.1093/nar/gkac894.\n";