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.Rhistory
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bookdown::render_book(input = "index.Rmd", output_format = "bookdown::pdf_book")
bookdown::render_book(input = "index.Rmd", output_format = "bookdown::pdf_book")
options(knitr.graphics.auto_pdf = TRUE)
knitr::include_graphics("tutorial-images\\joinCalc-tool_params.jpg")
knitr::include_graphics("tutorial-images\\joinCalc-batch.jpg")
options(knitr.graphics.auto_pdf = TRUE)
?knitr::include_graphics()
getOption("knitr.graphics.auto_pdf", FALSE)
sessionInfo()
??search
?search
.packages()
.packages(all.available = TRUE)
(.packages())
(knitr::is_html_output())
knitr::include_graphics("dupF-open_tool.jpg",auto_pdf = TRUE)
knitr::include_graphics("_bookdown_files/tutorials_book_files/figure-latex/dupF-open_tool.jpg",auto_pdf = TRUE)
knitr::include_graphics("tutorial-images\\joinCalc-toolparams.jpg",auto_pdf = TRUE)
install.packages("devtools")
library(devtools)
install.version("rmarkdown",version=1.8)
uninstall.packages(pkgs="rmarkdown")
library(devtools)
devtools::uninstall.packages(pkgs="rmarkdown")
installr::uninstall.packages(pkgs="rmarkdown")
install.version("rmarkdown",version=1.8)
?install.version
??install.version
devtools::install.version("rmarkdown",version=1.8)
devtools::install_version("rmarkdown",version=1.8)
knitr::include_graphics("tutorial-images/delF-messages.jpg",auto_pdf = TRUE)
rmarkdown::render(input = paste0(getwd(),"/06-Standardize_1_Address_Field.Rmd"),
output_file = 06-Standardize_1_Address_Field,
clean= FALSE,
pdf_document2(toc = TRUE, number_sections = TRUE, fig_caption = TRUE, toc_unnumbered = FALSE, toc_appendix = TRUE, toc_bib = TRUE, quote_footer = NULL, highlight_bw = FALSE)
)
library(bookdown)
rmarkdown::render(input = paste0(getwd(),"/06-Standardize_1_Address_Field.Rmd"),
output_file = 06-Standardize_1_Address_Field,
clean= FALSE,
pdf_document2(toc = TRUE, number_sections = TRUE, fig_caption = TRUE, toc_unnumbered = FALSE, toc_appendix = TRUE, toc_bib = TRUE, quote_footer = NULL, highlight_bw = FALSE)
)
rmarkdown::render(input = paste0(getwd(),"/06-Standardize_1_Address_Field.Rmd"),
output_file = "06-Standardize_1_Address_Field",
clean= FALSE,
pdf_document2(toc = TRUE, number_sections = TRUE, fig_caption = TRUE, toc_unnumbered = FALSE, toc_appendix = TRUE, toc_bib = TRUE, quote_footer = NULL, highlight_bw = FALSE)
)
knitr::include_graphics(paste0(getwd(),"tutorial-images\\joinCalcopentool.jpg"),auto_pdf = TRUE)
paste0(getwd(),"tutorial-images\\joinCalcopentool.jpg")
knitr::include_graphics(paste0(getwd(),"\\tutorial-images\\joinCalcopentool.jpg"),auto_pdf = TRUE)
knitr::include_graphics("\\figures\\joinCalcopentool.jpg",auto_pdf = TRUE)
knitr::include_graphics("\\figures\\joinCalcopentool.jpg",auto_pdf = TRUE)
knitr::include_graphics(paste0(getwd(),"figures\\joinCalc-toolparams.jpg"),auto_pdf = TRUE)
knitr::include_graphics("/figures/joinCalcopentool.jpg",auto_pdf = TRUE)
knitr::include_graphics(paste0(getwd(),"figures/joinCalc-toolparams.jpg"),auto_pdf = TRUE)
knitr::include_graphics("figures/spatjoinCalc-before.jpg",auto_pdf = TRUE)
knitr::include_graphics("figures/joinCalc-toolparams.jpg",auto_pdf = TRUE)
knitr::include_graphics("figures/spatjoinCalc-before.jpg",auto_pdf = TRUE)
knitr::include_graphics("figures/spatjoinCalc-before.jpg",auto_pdf = TRUE)
knitr::include_graphics("figures/spatjoinCalc-opentool.jpg",auto_pdf = TRUE)
knitr::include_graphics("figures/spatjoinCalc-before.jpg",auto_pdf = TRUE)
knitr::include_graphics("figures/spatjoinCalcopentool.jpg",auto_pdf = TRUE)
knitr::include_graphics("figures/spatjoinCalc-before.jpg",auto_pdf = TRUE)
knitr::include_graphics("figures/std3-toolparams.jpg",auto_pdf = TRUE)
knitr::include_graphics("figures/std3-open.jpg",auto_pdf = TRUE)
knitr::include_graphics("figures/std3-after.jpg",auto_pdf = TRUE)
knitr::include_graphics("figures/std3-toolparams.jpg",auto_pdf = TRUE)
knitr::include_graphics("figures/std3-before.jpg",auto_pdf = TRUE)
knitr::include_graphics("figures/indtSearch-params.jpg",auto_pdf = TRUE)
knitr::include_graphics("figures/indtSearch-messages",auto_pdf = TRUE)
knitr::include_graphics("figures/indtSearch-messages.jpg",auto_pdf = TRUE)
knitr::include_graphics("figures/indtSearch-messages.jpg",auto_pdf = TRUE)
knitr::include_graphics("figures/indtSearch-missingFCs.jpg",auto_pdf = TRUE)
knitr::include_graphics("figures/indtSearch-missingFLDs.jpg",auto_pdf = TRUE)
knitr::include_graphics("figures/indtSearch-missingData.jpg",auto_pdf = TRUE)
knit_hooks$set(crop = hook_pdfcrop)
library(knitr)
knit_hooks$set(crop = hook_pdfcrop)
packrat::init(options = list(auto.snapshot = TRUE))
library(bookdown)
library(rmarkdown)
library(knitr)
knit_hooks$set(crop = hook_pdfcrop)
options(tinytex.verbose = TRUE)
options(knitr.graphics.auto_pdf = TRUE)
knitr::opts_chunk$set(fig.pos = 'H')
# automatically create a bib database for R packages
knitr::write_bib((.packages()), 'packages.bib')
library(knitr)
opts_chunk$set(tidy.opts=list(width.cutoff=60),tidy=TRUE)
opts_chunk$set(fig.retina=2,dpi=96)
knitr::include_graphics("figures/indtSumm-open.jpg",auto_pdf = TRUE)
knitr::include_graphics("figures/exMeta-open.jpg",auto_pdf = TRUE)
knitr::include_graphics("figures/exMeta-params.jpg",auto_pdf = TRUE)
knitr::include_graphics("figures/exMeta-after.jpg",auto_pdf = TRUE)
knitr::include_graphics("figures/imMeta-params.jpg",auto_pdf = TRUE)
knitr::include_graphics("figures/imMeta-messages.jpg",auto_pdf = TRUE)
knitr::include_graphics("figures/imMeta-messages.jpg",auto_pdf = TRUE)
knitr::include_graphics("figures/imMeta-after.jpg",auto_pdf = TRUE)
knitr::include_graphics("figures/chkG-after.jpg",auto_pdf = TRUE)
knitr::include_graphics("figures/indtSearch-missingData.jpg",auto_pdf = TRUE)
knitr::include_graphics("figures/summIndt-sheets.jpg",auto_pdf = TRUE)
knitr::include_graphics("figures/exMeta-after.jpg",auto_pdf = TRUE)
knitr::include_graphics("figures/imMeta-after.jpg",auto_pdf = TRUE)
install.packages("tufte")
library(tufte)
library(tinytex)
library(bookdown)
library(rmarkdown)
library(knitr)
tinytex:::is_tinytex()
tinytex::uninstall_tinytex()
tinytex::install_tinytex()
library(tinytex)
tinytex:::is_tinytex()
library(tinytex)
tinytex:::is_tinytex()
tinytex::install_tinytex()
library(tinytex)
tinytex:::is_tinytex()
system("xelatex")
system("xelatex")
library(tinytex)
library(bookdown)
library(rmarkdown)
library(rmarkdown)
library(knitr)
library(tinytex)
tinytex:::is_tinytex()
?tinytex
??tinytex
tinytex::install_tinytex()
tinytex:::is_tinytex()
library(tinytex)
tinytex:::is_tinytex()
knitr::include_graphics("figures/chkG-open.jpg",auto_pdf = TRUE)
knitr::include_graphics("figures/chkG-params.jpg",auto_pdf = TRUE)
htmltools::img(src = knitr::image_uri("figures/thumbnail.png"),
alt = 'logo',
style = 'position:absolute; top:0; right:0; padding:10px;')
htmltools::img(src = knitr::image_uri(file.path("figures/thumbnail.png")),
alt = 'logo',
style = 'position:absolute; top:0; right:0; padding:10px;')
htmltools::img(src = "figures/thumbnail.png",
alt = 'logo',
style = 'position:absolute; top:0; right:0; padding:10px;')
?htmltools::img
knitr::include_graphics("figures/xCIP-after.jpg",auto_pdf = TRUE)
packrat::bundle()