package: Adding cgatcore to packages

Also attempting to install these dependencies before installing isoslam and its test dependencies.
sudlab · Nov 21, 2024 · 2b9822d · 2b9822d
1 parent 145ad86
commit 2b9822d
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diff --git a/.github/workflows/tests.yaml b/.github/workflows/tests.yaml
@@ -41,6 +41,9 @@ jobs:
           pip install --upgrade pip setuptools
           virtualenv --upgrade-embed-wheels
           pip install numpy
+          pip show numpy
+          pip install cgatcore
+          pip install cgat
           pip install -e .[tests]
       - name: Test with pytest
         run: |

diff --git a/pyproject.toml b/pyproject.toml
@@ -38,12 +38,13 @@ keywords = [
 dependencies = [
   "apsw",
   "cgat",
+  "cgatcore",
   "gevent",
   "matplotlib",
   "numpy",
   "pandas",
   "pysam",
-  "ruffus",
+  # "ruffus",
   "sqlalchemy",
 ]