diff --git a/isoslam/all_introns_counts_and_info.py b/isoslam/all_introns_counts_and_info.py index 7c6a9e1..02850bb 100644 --- a/isoslam/all_introns_counts_and_info.py +++ b/isoslam/all_introns_counts_and_info.py @@ -118,7 +118,7 @@ def fragment_iterator(read_iterator): with open(argv_as_dictionary["outfile_tsv"], "w") as outfile: # Add column headers outfile.write( - "Read_UID\tTranscript_id\tStart\tEnd\tChr\tStrand\tAssignment\tConversions\tConvertable\tCoverage\n" + "Read_UID\tTranscript_id\tStart\tEnd\tChr\tStrand\tAssignment\tConversions\tConvertible\tCoverage\n" ) results = pd.DataFrame() @@ -143,7 +143,7 @@ def fragment_iterator(read_iterator): if i_progress == 10000: # E.debug(str(i_total_progress) + " pairs processed") - # E.debug(str(i) + "spliced/retained pairs proccessed") + # E.debug(str(i) + "spliced/retained pairs processed") i_progress = 0 read1_start = read1.reference_start @@ -268,7 +268,7 @@ def fragment_iterator(read_iterator): continue first_matched += 1 - # Create a set of tupples: (tx_id,(start,end)) + # Create a set of tuples: (tx_id,(start,end)) # Retained assign_conversions_to_retained = [] @@ -355,7 +355,7 @@ def fragment_iterator(read_iterator): # in the forward read. if strand == "+": # pass if mapped to +ve transcript - convertable = set() + convertible = set() # create a set (list that only allows unique values to be added) # we will add the genome_pos at each point for both reads # len(coverage) will be the # of uniquely covered positions @@ -376,7 +376,7 @@ def fragment_iterator(read_iterator): read_seq = forward_read.query_sequence[read_pos] if genome_seq.upper() == "T": - convertable.add(genome_pos) + convertible.add(genome_pos) if read_seq == "C" and genome_seq == "t": variants_at_position = list( @@ -400,7 +400,7 @@ def fragment_iterator(read_iterator): read_seq = reverse_read.query_sequence[read_pos] if genome_seq.upper() == "A": - convertable.add(genome_pos) + convertible.add(genome_pos) if read_seq == "G" and genome_seq == "a": variants_at_position = list( @@ -417,7 +417,7 @@ def fragment_iterator(read_iterator): elif strand == "-": # pass if mapped to -ve transcript - convertable = set() + convertible = set() coverage = set() converted_position = set() for base in forward_read.get_aligned_pairs(with_seq=True): @@ -430,7 +430,7 @@ def fragment_iterator(read_iterator): read_seq = forward_read.query_sequence[read_pos] if genome_seq.upper() == "A": - convertable.add(genome_pos) + convertible.add(genome_pos) if read_seq == "G" and genome_seq == "a": variants_at_position = list( @@ -455,7 +455,7 @@ def fragment_iterator(read_iterator): read_seq = reverse_read.query_sequence[read_pos] if genome_seq.upper() == "T": - convertable.add(genome_pos) + convertible.add(genome_pos) if read_seq == "C" and genome_seq == "t": variants_at_position = list( @@ -476,7 +476,7 @@ def fragment_iterator(read_iterator): i_output += 1 # Stream output as a tsv - # Format: read_uid, transcript_id, start, end, ret/spl, conversions, convertable, coverage + # Format: read_uid, transcript_id, start, end, ret/spl, conversions, convertible, coverage # A read pair will cover multiple lines if it matches multiple events (but metadata will be same) # ns-rse : Add in building Pandas dataframe so the function can return something that is testable for transcript_id, position in assign_conversions_to_retained: @@ -484,7 +484,7 @@ def fragment_iterator(read_iterator): outfile.write( f"{i_output}\t{transcript_id}\t" f"{start}\t{end}\t{chr}\t{strand}\tRet\t{len(converted_position)}\t" - f"{len(convertable)}\t{len(coverage)}\n" + f"{len(convertible)}\t{len(coverage)}\n" ) row = pd.DataFrame( [ @@ -497,7 +497,7 @@ def fragment_iterator(read_iterator): "Strand": strand, "Assignment": "Ret", "Conversions": len(converted_position), - "Convertable": len(convertable), + "Convertible": len(convertible), "Coverage": len(coverage), } ] @@ -509,7 +509,7 @@ def fragment_iterator(read_iterator): outfile.write( f"{i_output}\t{transcript_id}\t" f"{start}\t{end}\t{chr}\t{strand}\tSpl\t{len(converted_position)}\t" - f"{len(convertable)}\t{len(coverage)}\n" + f"{len(convertible)}\t{len(coverage)}\n" ) row = pd.DataFrame( [ @@ -522,7 +522,7 @@ def fragment_iterator(read_iterator): "Strand": strand, "Assignment": "Spl", "Conversions": len(converted_position), - "Convertable": len(convertable), + "Convertible": len(convertible), "Coverage": len(coverage), } ] diff --git a/isoslam/logging.py b/isoslam/logging.py new file mode 100644 index 0000000..3bbd37d --- /dev/null +++ b/isoslam/logging.py @@ -0,0 +1,14 @@ +"""Configure logging.""" + +import sys + +from loguru import logger + +logger.remove() +logger.add(sys.stderr) +logger.add( + sys.stderr, + colorize=True, + format="{time:HH:mm:ss} | {level} |{file}:{module}:" + "{function}:{line} | {message}", +) diff --git a/pyproject.toml b/pyproject.toml index 532bd3a..83325c0 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -40,6 +40,7 @@ dependencies = [ "cgat", "cgatcore", "gevent", + "loguru", "matplotlib", "numpy", "pandas", @@ -80,6 +81,7 @@ dev = [ "pyupgrade", "pytest-durations", "pytest-icdiff", + "pytest-testmon", "pytest-xdist", ] pypi = [ @@ -129,6 +131,7 @@ xfail_strict = true source = ["isoslam"] omit = [ "isoslam/_version.py", + "isoslam/all_introns_counts_and_info.py", "*tests*", "**/__init__*", ] @@ -170,6 +173,7 @@ exclude = [ "build", "dist", "docs/source/conf.py", + "isoslam/all_introns_counts_and_info.py", ] # per-file-ignores = [] line-length = 120 @@ -251,6 +255,7 @@ exclude = [ # don't report on objects that match any of these regex "^test_", "^conftest", "^conf$", + "isoslam/all_introns_counts_and_info.py", ] override_SS05 = [ # override SS05 to allow docstrings starting with these words "^Process ", @@ -267,6 +272,9 @@ python_version = "3.9" strict = true enable_error_code = ["ignore-without-code", "redundant-expr", "truthy-bool"] warn_unreachable = true +exclude = [ + "isoslam/all_introns_counts_and_info.py", +] [[tool.mypy.overrides]] module = [ "numpy.*", ] diff --git a/tests/_regtest_outputs/test_all_introns_counts_and_info.test_main[file_1].out b/tests/_regtest_outputs/test_all_introns_counts_and_info.test_main[file_1].out index b93e864..5da6c55 100644 --- a/tests/_regtest_outputs/test_all_introns_counts_and_info.test_main[file_1].out +++ b/tests/_regtest_outputs/test_all_introns_counts_and_info.test_main[file_1].out @@ -1,4 +1,4 @@ - Read_UID Transcript_id Start End Chr Strand Assignment Conversions Convertable Coverage + Read_UID Transcript_id Start End Chr Strand Assignment Conversions Convertible Coverage 0 1 ENST00000442898 18492 24850 9 - Ret 0 64 272 0 1 ENST00000442898 18174 18380 9 - Spl 0 64 272 0 2 ENST00000442898 18492 24850 9 - Ret 0 64 272 @@ -25,16 +25,16 @@ 0 15 ENST00000442898 16061 16717 9 - Ret 0 51 295 0 16 ENST00000442898 17166 17343 9 - Spl 0 63 300 0 17 ENST00000442898 17166 17343 9 - Spl 0 63 300 -0 18 ENST00000442898 17479 17718 9 - Spl 1 62 221 0 18 ENST00000442898 17166 17343 9 - Spl 1 62 221 +0 18 ENST00000442898 17479 17718 9 - Spl 1 62 221 0 19 ENST00000442898 17855 18027 9 - Spl 1 43 123 0 20 ENST00000442898 17855 18027 9 - Spl 1 43 123 -0 21 ENST00000442898 17855 18027 9 - Spl 0 60 300 0 21 ENST00000442898 17166 17343 9 - Spl 0 60 300 +0 21 ENST00000442898 17855 18027 9 - Spl 0 60 300 0 22 ENST00000442898 18492 24850 9 - Ret 0 59 214 0 23 ENST00000442898 18492 24850 9 - Spl 0 57 153 -0 24 ENST00000442898 17855 18027 9 - Spl 0 56 300 0 24 ENST00000442898 17166 17343 9 - Spl 0 56 300 +0 24 ENST00000442898 17855 18027 9 - Spl 0 56 300 0 25 ENST00000442898 18492 24850 9 - Ret 1 57 299 0 25 ENST00000442898 18174 18380 9 - Spl 1 57 299 0 26 ENST00000442898 17479 17718 9 - Spl 1 65 267 @@ -53,12 +53,12 @@ 0 32 ENST00000442898 17855 18027 9 - Spl 0 62 298 0 33 ENST00000442898 18492 24850 9 - Ret 0 45 118 0 34 ENST00000442898 18492 24850 9 - Ret 0 45 118 +0 35 ENST00000442898 17166 17343 9 - Spl 0 59 300 0 35 ENST00000442898 17479 17718 9 - Spl 0 59 300 0 35 ENST00000442898 17855 18027 9 - Spl 0 59 300 -0 35 ENST00000442898 17166 17343 9 - Spl 0 59 300 0 36 ENST00000442898 14940 15080 9 - Ret 0 42 300 -0 37 ENST00000442898 17479 17718 9 - Spl 0 59 300 0 37 ENST00000442898 17166 17343 9 - Spl 0 59 300 +0 37 ENST00000442898 17479 17718 9 - Spl 0 59 300 0 37 ENST00000442898 17855 18027 9 - Spl 0 59 300 0 38 ENST00000442898 17479 17718 9 - Spl 0 66 213 0 38 ENST00000442898 17166 17343 9 - Spl 0 66 213 @@ -68,11 +68,11 @@ 0 40 ENST00000442898 18174 18380 9 - Spl 0 57 277 0 41 ENST00000442898 17479 17718 9 - Spl 0 63 192 0 41 ENST00000442898 17855 18027 9 - Spl 0 63 192 -0 42 ENST00000442898 17855 18027 9 - Spl 0 62 300 0 42 ENST00000442898 17166 17343 9 - Spl 0 62 300 +0 42 ENST00000442898 17855 18027 9 - Spl 0 62 300 0 43 ENST00000442898 18492 24850 9 - Ret 0 58 219 -0 44 ENST00000442898 17855 18027 9 - Spl 0 60 300 0 44 ENST00000442898 17166 17343 9 - Spl 0 60 300 +0 44 ENST00000442898 17855 18027 9 - Spl 0 60 300 0 45 ENST00000442898 18492 24850 9 - Spl 0 53 300 0 45 ENST00000442898 17855 18027 9 - Spl 0 53 300 0 46 ENST00000442898 18492 24850 9 - Ret 0 69 300 @@ -88,36 +88,36 @@ 0 51 ENST00000442898 17166 17343 9 - Spl 1 62 221 0 52 ENST00000442898 17479 17718 9 - Spl 0 60 292 0 52 ENST00000442898 17855 18027 9 - Spl 0 60 292 -0 53 ENST00000442898 17855 18027 9 - Spl 0 63 300 0 53 ENST00000442898 17166 17343 9 - Spl 0 63 300 +0 53 ENST00000442898 17855 18027 9 - Spl 0 63 300 0 54 ENST00000442898 18492 24850 9 - Ret 0 58 219 0 55 ENST00000442898 18492 24850 9 - Ret 0 58 219 0 56 ENST00000442898 18492 24850 9 - Ret 0 57 277 0 56 ENST00000442898 18174 18380 9 - Spl 0 57 277 -0 57 ENST00000442898 17855 18027 9 - Spl 0 62 298 0 57 ENST00000442898 17166 17343 9 - Spl 0 62 298 +0 57 ENST00000442898 17855 18027 9 - Spl 0 62 298 0 58 ENST00000442898 14940 15080 9 - Ret 0 42 300 0 59 ENST00000442898 17166 17343 9 - Spl 0 62 300 0 59 ENST00000442898 17855 18027 9 - Spl 0 62 300 0 60 ENST00000442898 18492 24850 9 - Ret 0 59 300 -0 61 ENST00000442898 17479 17718 9 - Spl 0 66 300 0 61 ENST00000442898 18174 18380 9 - Spl 0 66 300 +0 61 ENST00000442898 17479 17718 9 - Spl 0 66 300 0 62 ENST00000442898 18174 18380 9 - Ret 0 67 297 0 63 ENST00000442898 18174 18380 9 - Ret 0 67 297 0 64 ENST00000442898 17479 17718 9 - Spl 0 65 218 0 64 ENST00000442898 17166 17343 9 - Spl 0 65 218 -0 65 ENST00000442898 17479 17718 9 - Spl 1 65 267 0 65 ENST00000442898 17166 17343 9 - Spl 1 65 267 +0 65 ENST00000442898 17479 17718 9 - Spl 1 65 267 0 66 ENST00000442898 16061 16717 9 - Ret 0 38 268 0 66 ENST00000442898 15149 15908 9 - Spl 0 38 268 -0 67 ENST00000442898 17479 17718 9 - Spl 0 66 300 0 67 ENST00000442898 18174 18380 9 - Spl 0 66 300 +0 67 ENST00000442898 17479 17718 9 - Spl 0 66 300 0 68 ENST00000442898 18492 24850 9 - Ret 0 59 262 0 68 ENST00000442898 18174 18380 9 - Spl 0 59 262 0 69 ENST00000442898 17479 17718 9 - Spl 0 63 285 0 69 ENST00000442898 17166 17343 9 - Spl 0 63 285 -0 70 ENST00000442898 17479 17718 9 - Spl 0 63 298 0 70 ENST00000442898 17166 17343 9 - Spl 0 63 298 +0 70 ENST00000442898 17479 17718 9 - Spl 0 63 298 0 70 ENST00000442898 17855 18027 9 - Spl 0 63 298 0 71 ENST00000442898 17479 17718 9 - Spl 0 64 299 0 71 ENST00000442898 17855 18027 9 - Spl 0 64 299 @@ -126,8 +126,8 @@ 0 73 ENST00000442898 25004 29601 9 - Ret 0 63 235 0 74 ENST00000442898 17479 17718 9 - Spl 1 65 300 0 74 ENST00000442898 17855 18027 9 - Spl 1 65 300 -0 75 ENST00000442898 17479 17718 9 - Spl 1 68 242 0 75 ENST00000442898 17166 17343 9 - Spl 1 68 242 +0 75 ENST00000442898 17479 17718 9 - Spl 1 68 242 0 76 ENST00000442898 17479 17718 9 - Spl 0 64 270 0 76 ENST00000442898 17855 18027 9 - Spl 0 64 270 0 77 ENST00000442898 16876 16964 9 - Spl 2 55 136 @@ -153,10 +153,10 @@ 0 88 ENST00000442898 18174 18380 9 - Spl 1 57 299 0 89 ENST00000442898 17479 17718 9 - Spl 0 64 299 0 89 ENST00000442898 17855 18027 9 - Spl 0 64 299 -0 90 ENST00000442898 17479 17718 9 - Spl 2 65 300 0 90 ENST00000442898 18174 18380 9 - Spl 2 65 300 -0 91 ENST00000442898 17479 17718 9 - Spl 2 65 300 +0 90 ENST00000442898 17479 17718 9 - Spl 2 65 300 0 91 ENST00000442898 18174 18380 9 - Spl 2 65 300 +0 91 ENST00000442898 17479 17718 9 - Spl 2 65 300 0 92 ENST00000442898 18492 24850 9 - Ret 0 58 219 0 93 ENST00000442898 17479 17718 9 - Spl 1 62 268 0 93 ENST00000442898 17855 18027 9 - Spl 1 62 268 @@ -178,8 +178,8 @@ 0 103 ENST00000442898 17479 17718 9 - Spl 2 64 270 0 103 ENST00000442898 17855 18027 9 - Spl 2 64 270 0 104 ENST00000442898 17855 18027 9 - Spl 0 47 149 -0 105 ENST00000442898 17479 17718 9 - Spl 0 66 300 0 105 ENST00000442898 18174 18380 9 - Spl 0 66 300 +0 105 ENST00000442898 17479 17718 9 - Spl 0 66 300 0 106 ENST00000442898 18492 24850 9 - Ret 0 60 229 0 107 ENST00000442898 17479 17718 9 - Spl 0 62 293 0 107 ENST00000442898 17855 18027 9 - Spl 0 62 293 @@ -191,11 +191,11 @@ 0 110 ENST00000442898 17855 18027 9 - Spl 0 56 300 0 111 ENST00000442898 18492 24850 9 - Ret 0 60 271 0 111 ENST00000442898 18174 18380 9 - Spl 0 60 271 -0 112 ENST00000442898 17479 17718 9 - Spl 1 60 298 0 112 ENST00000442898 17166 17343 9 - Spl 1 60 298 +0 112 ENST00000442898 17479 17718 9 - Spl 1 60 298 0 112 ENST00000442898 17855 18027 9 - Spl 1 60 298 -0 113 ENST00000442898 17479 17718 9 - Spl 2 65 300 0 113 ENST00000442898 18174 18380 9 - Spl 2 65 300 +0 113 ENST00000442898 17479 17718 9 - Spl 2 65 300 0 114 ENST00000442898 18492 24850 9 - Ret 0 59 262 0 114 ENST00000442898 18174 18380 9 - Spl 0 59 262 0 115 ENST00000442898 18492 24850 9 - Spl 1 53 300 @@ -248,8 +248,8 @@ 0 143 ENST00000442898 17855 18027 9 - Spl 0 51 300 0 144 ENST00000442898 17479 17718 9 - Ret 2 59 300 0 144 ENST00000442898 17855 18027 9 - Ret 2 59 300 -0 145 ENST00000442898 17479 17718 9 - Spl 0 66 213 0 145 ENST00000442898 17166 17343 9 - Spl 0 66 213 +0 145 ENST00000442898 17479 17718 9 - Spl 0 66 213 0 146 ENST00000442898 18492 24850 9 - Spl 0 58 169 0 147 ENST00000442898 17479 17718 9 - Spl 0 63 192 0 147 ENST00000442898 17855 18027 9 - Spl 0 63 192 @@ -276,22 +276,22 @@ 0 162 ENST00000442898 17479 17718 9 - Spl 1 65 262 0 162 ENST00000442898 17855 18027 9 - Spl 1 65 262 0 163 ENST00000442898 16061 16717 9 - Ret 0 51 295 +0 164 ENST00000442898 17166 17343 9 - Spl 0 63 300 0 164 ENST00000442898 17479 17718 9 - Spl 0 63 300 0 164 ENST00000442898 17855 18027 9 - Spl 0 63 300 -0 164 ENST00000442898 17166 17343 9 - Spl 0 63 300 0 165 ENST00000442898 18174 18380 9 - Spl 1 62 181 0 166 ENST00000442898 17479 17718 9 - Spl 0 60 292 0 166 ENST00000442898 17855 18027 9 - Spl 0 60 292 0 167 ENST00000442898 17166 17343 9 - Spl 0 63 300 0 168 ENST00000442898 17479 17718 9 - Spl 0 62 202 0 168 ENST00000442898 17855 18027 9 - Spl 0 62 202 -0 169 ENST00000442898 17479 17718 9 - Spl 0 62 300 0 169 ENST00000442898 17166 17343 9 - Spl 0 62 300 -0 170 ENST00000442898 17479 17718 9 - Spl 0 62 300 +0 169 ENST00000442898 17479 17718 9 - Spl 0 62 300 0 170 ENST00000442898 17166 17343 9 - Spl 0 62 300 +0 170 ENST00000442898 17479 17718 9 - Spl 0 62 300 0 171 ENST00000442898 16061 16717 9 - Ret 0 51 295 -0 172 ENST00000442898 17855 18027 9 - Spl 0 60 300 0 172 ENST00000442898 17166 17343 9 - Spl 0 60 300 +0 172 ENST00000442898 17855 18027 9 - Spl 0 60 300 0 173 ENST00000442898 18174 18380 9 - Spl 0 57 143 0 174 ENST00000442898 17479 17718 9 - Ret 3 59 214 0 175 ENST00000442898 17855 18027 9 - Spl 1 48 152 @@ -306,20 +306,20 @@ 0 182 ENST00000442898 18174 18380 9 - Spl 1 62 181 0 183 ENST00000442898 18492 24850 9 - Spl 0 53 300 0 183 ENST00000442898 17855 18027 9 - Spl 0 53 300 -0 184 ENST00000442898 17855 18027 9 - Spl 0 62 300 0 184 ENST00000442898 17166 17343 9 - Spl 0 62 300 +0 184 ENST00000442898 17855 18027 9 - Spl 0 62 300 0 185 ENST00000442898 17855 18027 9 - Spl 1 50 155 0 186 ENST00000442898 17479 17718 9 - Spl 1 60 299 0 186 ENST00000442898 17855 18027 9 - Spl 1 60 299 -0 187 ENST00000442898 17479 17718 9 - Spl 0 66 300 0 187 ENST00000442898 18174 18380 9 - Spl 0 66 300 +0 187 ENST00000442898 17479 17718 9 - Spl 0 66 300 0 188 ENST00000442898 18492 24850 9 - Spl 1 53 300 0 188 ENST00000442898 17855 18027 9 - Spl 1 53 300 0 189 ENST00000442898 25004 29601 9 - Ret 0 63 235 0 190 ENST00000442898 25004 29601 9 - Ret 0 63 235 0 191 ENST00000442898 16061 16717 9 - Ret 0 51 295 -0 192 ENST00000442898 17479 17718 9 - Spl 0 63 298 0 192 ENST00000442898 17166 17343 9 - Spl 0 63 298 +0 192 ENST00000442898 17479 17718 9 - Spl 0 63 298 0 192 ENST00000442898 17855 18027 9 - Spl 0 63 298 0 193 ENST00000442898 17479 17718 9 - Spl 0 63 285 0 193 ENST00000442898 17166 17343 9 - Spl 0 63 285 @@ -331,8 +331,8 @@ 0 198 ENST00000442898 17855 18027 9 - Spl 0 47 149 0 199 ENST00000442898 17479 17718 9 - Spl 0 66 213 0 199 ENST00000442898 17166 17343 9 - Spl 0 66 213 -0 200 ENST00000442898 15149 15908 9 - Spl 0 54 125 0 200 ENST00000442898 14940 15080 9 - Spl 0 54 125 +0 200 ENST00000442898 15149 15908 9 - Spl 0 54 125 0 201 ENST00000442898 14940 15080 9 - Ret 0 42 300 0 202 ENST00000442898 17166 17343 9 - Spl 0 65 206 0 203 ENST00000442898 17479 17718 9 - Spl 1 65 251 @@ -353,15 +353,15 @@ 0 212 ENST00000442898 18492 24850 9 - Spl 1 59 300 0 212 ENST00000442898 18174 18380 9 - Spl 1 59 300 0 212 ENST00000442898 17855 18027 9 - Spl 1 59 300 -0 213 ENST00000442898 17479 17718 9 - Spl 0 66 300 0 213 ENST00000442898 18174 18380 9 - Spl 0 66 300 +0 213 ENST00000442898 17479 17718 9 - Spl 0 66 300 0 214 ENST00000442898 17479 17718 9 - Spl 0 64 270 0 214 ENST00000442898 17855 18027 9 - Spl 0 64 270 +0 215 ENST00000442898 17166 17343 9 - Spl 0 59 300 0 215 ENST00000442898 17479 17718 9 - Spl 0 59 300 0 215 ENST00000442898 17855 18027 9 - Spl 0 59 300 -0 215 ENST00000442898 17166 17343 9 - Spl 0 59 300 -0 216 ENST00000442898 17855 18027 9 - Spl 0 62 298 0 216 ENST00000442898 17166 17343 9 - Spl 0 62 298 +0 216 ENST00000442898 17855 18027 9 - Spl 0 62 298 0 217 ENST00000442898 17479 17718 9 - Ret 0 61 282 0 217 ENST00000442898 17855 18027 9 - Spl 0 61 282 0 218 ENST00000442898 15149 15908 9 - Spl 0 40 300 @@ -370,8 +370,8 @@ 0 220 ENST00000442898 17855 18027 9 - Spl 0 60 299 0 221 ENST00000442898 17479 17718 9 - Spl 1 61 213 0 221 ENST00000442898 17855 18027 9 - Spl 1 61 213 -0 222 ENST00000442898 17479 17718 9 - Spl 0 66 300 0 222 ENST00000442898 18174 18380 9 - Spl 0 66 300 +0 222 ENST00000442898 17479 17718 9 - Spl 0 66 300 0 223 ENST00000442898 17855 18027 9 - Ret 2 36 300 0 224 ENST00000442898 18174 18380 9 - Spl 1 55 275 0 224 ENST00000442898 17855 18027 9 - Spl 1 55 275 @@ -393,11 +393,11 @@ 0 234 ENST00000442898 18492 24850 9 - Ret 0 51 219 0 235 ENST00000442898 17479 17718 9 - Spl 0 62 300 0 235 ENST00000442898 17855 18027 9 - Spl 0 62 300 -0 236 ENST00000442898 17479 17718 9 - Spl 1 62 300 0 236 ENST00000442898 18174 18380 9 - Spl 1 62 300 +0 236 ENST00000442898 17479 17718 9 - Spl 1 62 300 0 236 ENST00000442898 17855 18027 9 - Spl 1 62 300 -0 237 ENST00000442898 17479 17718 9 - Spl 0 66 300 0 237 ENST00000442898 18174 18380 9 - Spl 0 66 300 +0 237 ENST00000442898 17479 17718 9 - Spl 0 66 300 0 238 ENST00000442898 17479 17718 9 - Spl 2 63 183 0 238 ENST00000442898 17855 18027 9 - Spl 2 63 183 0 239 ENST00000442898 18174 18380 9 - Ret 0 67 297 @@ -410,10 +410,10 @@ 0 243 ENST00000442898 15149 15908 9 - Spl 0 38 268 0 244 ENST00000442898 18174 18380 9 - Spl 1 55 275 0 244 ENST00000442898 17855 18027 9 - Spl 1 55 275 -0 245 ENST00000442898 17479 17718 9 - Spl 2 65 300 0 245 ENST00000442898 18174 18380 9 - Spl 2 65 300 -0 246 ENST00000442898 17855 18027 9 - Spl 0 62 300 +0 245 ENST00000442898 17479 17718 9 - Spl 2 65 300 0 246 ENST00000442898 17166 17343 9 - Spl 0 62 300 +0 246 ENST00000442898 17855 18027 9 - Spl 0 62 300 0 247 ENST00000442898 16061 16717 9 - Ret 0 68 300 0 248 ENST00000442898 16061 16717 9 - Spl 1 48 273 0 249 ENST00000442898 18492 24850 9 - Spl 0 60 256 @@ -429,8 +429,8 @@ 0 254 ENST00000442898 17855 18027 9 - Spl 1 56 291 0 255 ENST00000442898 18492 24850 9 - Spl 1 53 300 0 255 ENST00000442898 17855 18027 9 - Spl 1 53 300 -0 256 ENST00000442898 17855 18027 9 - Spl 0 62 300 0 256 ENST00000442898 17166 17343 9 - Spl 0 62 300 +0 256 ENST00000442898 17855 18027 9 - Spl 0 62 300 0 257 ENST00000442898 25004 29601 9 - Ret 0 63 235 0 258 ENST00000442898 17166 17343 9 - Spl 0 62 298 0 258 ENST00000442898 17855 18027 9 - Spl 0 62 298 @@ -438,21 +438,21 @@ 0 260 ENST00000442898 25004 29601 9 - Ret 0 63 235 0 261 ENST00000442898 17479 17718 9 - Spl 2 63 183 0 261 ENST00000442898 17855 18027 9 - Spl 2 63 183 -0 262 ENST00000442898 17855 18027 9 - Spl 0 60 300 0 262 ENST00000442898 17166 17343 9 - Spl 0 60 300 -0 263 ENST00000442898 17855 18027 9 - Spl 0 60 300 +0 262 ENST00000442898 17855 18027 9 - Spl 0 60 300 0 263 ENST00000442898 17166 17343 9 - Spl 0 60 300 -0 264 ENST00000442898 17855 18027 9 - Spl 0 60 300 +0 263 ENST00000442898 17855 18027 9 - Spl 0 60 300 0 264 ENST00000442898 17166 17343 9 - Spl 0 60 300 +0 264 ENST00000442898 17855 18027 9 - Spl 0 60 300 0 265 ENST00000442898 18174 18380 9 - Spl 0 65 176 0 266 ENST00000442898 17479 17718 9 - Ret 2 59 300 0 266 ENST00000442898 17855 18027 9 - Ret 2 59 300 0 267 ENST00000442898 17479 17718 9 - Ret 3 59 300 0 267 ENST00000442898 17855 18027 9 - Ret 3 59 300 -0 268 ENST00000442898 17479 17718 9 - Spl 0 66 298 0 268 ENST00000442898 18174 18380 9 - Spl 0 66 298 -0 269 ENST00000442898 17479 17718 9 - Spl 0 62 300 +0 268 ENST00000442898 17479 17718 9 - Spl 0 66 298 0 269 ENST00000442898 17166 17343 9 - Spl 0 62 300 +0 269 ENST00000442898 17479 17718 9 - Spl 0 62 300 0 270 ENST00000442898 18174 18380 9 - Spl 0 58 160 0 271 ENST00000442898 17479 17718 9 - Spl 1 61 213 0 271 ENST00000442898 17855 18027 9 - Spl 1 61 213 @@ -464,17 +464,17 @@ 0 274 ENST00000442898 17166 17343 9 - Spl 1 62 221 0 275 ENST00000442898 18492 24850 9 - Ret 0 57 277 0 275 ENST00000442898 18174 18380 9 - Spl 0 57 277 -0 276 ENST00000442898 17855 18027 9 - Spl 0 59 300 0 276 ENST00000442898 17166 17343 9 - Spl 0 59 300 +0 276 ENST00000442898 17855 18027 9 - Spl 0 59 300 0 277 ENST00000442898 18174 18380 9 - Ret 0 67 297 0 278 ENST00000442898 18492 24850 9 - Ret 0 60 292 0 279 ENST00000442898 17479 17718 9 - Ret 2 62 300 0 280 ENST00000442898 17479 17718 9 - Ret 2 62 300 0 281 ENST00000442898 17479 17718 9 - Spl 0 63 285 0 281 ENST00000442898 17166 17343 9 - Spl 0 63 285 +0 282 ENST00000442898 17166 17343 9 - Spl 0 59 300 0 282 ENST00000442898 17479 17718 9 - Spl 0 59 300 0 282 ENST00000442898 17855 18027 9 - Spl 0 59 300 -0 282 ENST00000442898 17166 17343 9 - Spl 0 59 300 0 283 ENST00000442898 17479 17718 9 - Spl 1 65 267 0 283 ENST00000442898 17166 17343 9 - Spl 1 65 267 0 284 ENST00000442898 17479 17718 9 - Spl 0 64 299 @@ -510,8 +510,8 @@ 0 300 ENST00000442898 18174 18380 9 - Spl 0 60 256 0 301 ENST00000442898 17479 17718 9 - Spl 1 65 267 0 301 ENST00000442898 17166 17343 9 - Spl 1 65 267 -0 302 ENST00000442898 17479 17718 9 - Spl 1 65 267 0 302 ENST00000442898 17166 17343 9 - Spl 1 65 267 +0 302 ENST00000442898 17479 17718 9 - Spl 1 65 267 0 303 ENST00000442898 18174 18380 9 - Spl 1 49 300 0 304 ENST00000442898 18492 24850 9 - Ret 0 54 300 0 304 ENST00000442898 18174 18380 9 - Spl 0 54 300 @@ -525,8 +525,8 @@ 0 309 ENST00000442898 17855 18027 9 - Spl 0 62 298 0 310 ENST00000442898 17479 17718 9 - Ret 0 61 282 0 310 ENST00000442898 17855 18027 9 - Spl 0 61 282 -0 311 ENST00000442898 17479 17718 9 - Spl 0 62 300 0 311 ENST00000442898 17166 17343 9 - Spl 0 62 300 +0 311 ENST00000442898 17479 17718 9 - Spl 0 62 300 0 312 ENST00000442898 17479 17718 9 - Spl 0 62 293 0 312 ENST00000442898 17855 18027 9 - Spl 0 62 293 0 313 ENST00000442898 18492 24850 9 - Spl 1 53 300 @@ -572,17 +572,17 @@ 0 338 ENST00000442898 17166 17343 9 - Spl 1 62 221 0 339 ENST00000442898 17166 17343 9 - Spl 0 62 300 0 339 ENST00000442898 17855 18027 9 - Spl 0 62 300 -0 340 ENST00000442898 17855 18027 9 - Spl 1 62 300 0 340 ENST00000442898 17166 17343 9 - Spl 1 62 300 -0 341 ENST00000442898 17855 18027 9 - Spl 0 62 300 +0 340 ENST00000442898 17855 18027 9 - Spl 1 62 300 0 341 ENST00000442898 17166 17343 9 - Spl 0 62 300 +0 341 ENST00000442898 17855 18027 9 - Spl 0 62 300 0 342 ENST00000442898 17479 17718 9 - Spl 1 65 262 0 342 ENST00000442898 17855 18027 9 - Spl 1 65 262 0 343 ENST00000442898 17479 17718 9 - Spl 1 65 251 0 343 ENST00000442898 17855 18027 9 - Spl 1 65 251 0 344 ENST00000442898 15149 15908 9 - Spl 0 40 300 -0 345 ENST00000442898 17479 17718 9 - Spl 2 65 300 0 345 ENST00000442898 18174 18380 9 - Spl 2 65 300 +0 345 ENST00000442898 17479 17718 9 - Spl 2 65 300 0 346 ENST00000442898 18492 24850 9 - Ret 1 57 299 0 346 ENST00000442898 18174 18380 9 - Spl 1 57 299 0 347 ENST00000442898 17479 17718 9 - Spl 0 62 202 @@ -595,8 +595,8 @@ 0 352 ENST00000442898 16061 16717 9 - Ret 1 52 300 0 353 ENST00000442898 18174 18380 9 - Spl 1 49 300 0 354 ENST00000442898 14940 15080 9 - Ret 0 42 300 -0 355 ENST00000442898 17479 17718 9 - Spl 1 62 221 0 355 ENST00000442898 17166 17343 9 - Spl 1 62 221 +0 355 ENST00000442898 17479 17718 9 - Spl 1 62 221 0 356 ENST00000442898 18492 24850 9 - Ret 1 64 212 0 356 ENST00000442898 18174 18380 9 - Spl 1 64 212 0 357 ENST00000442898 17479 17718 9 - Spl 0 66 213 @@ -613,10 +613,10 @@ 0 362 ENST00000442898 18174 18380 9 - Spl 0 60 271 0 363 ENST00000442898 17479 17718 9 - Ret 0 45 213 0 363 ENST00000442898 17855 18027 9 - Ret 0 45 213 -0 364 ENST00000442898 17855 18027 9 - Spl 0 62 300 0 364 ENST00000442898 17166 17343 9 - Spl 0 62 300 -0 365 ENST00000442898 17479 17718 9 - Spl 0 63 298 +0 364 ENST00000442898 17855 18027 9 - Spl 0 62 300 0 365 ENST00000442898 17166 17343 9 - Spl 0 63 298 +0 365 ENST00000442898 17479 17718 9 - Spl 0 63 298 0 365 ENST00000442898 17855 18027 9 - Spl 0 63 298 0 366 ENST00000442898 17479 17718 9 - Spl 2 70 208 0 367 ENST00000442898 17479 17718 9 - Ret 2 59 300 @@ -625,11 +625,11 @@ 0 368 ENST00000442898 17855 18027 9 - Spl 0 61 282 0 369 ENST00000442898 17479 17718 9 - Spl 0 65 218 0 369 ENST00000442898 17166 17343 9 - Spl 0 65 218 +0 370 ENST00000442898 17166 17343 9 - Spl 1 60 298 0 370 ENST00000442898 17479 17718 9 - Spl 1 60 298 0 370 ENST00000442898 17855 18027 9 - Spl 1 60 298 -0 370 ENST00000442898 17166 17343 9 - Spl 1 60 298 -0 371 ENST00000442898 17855 18027 9 - Spl 0 62 298 0 371 ENST00000442898 17166 17343 9 - Spl 0 62 298 +0 371 ENST00000442898 17855 18027 9 - Spl 0 62 298 0 372 ENST00000442898 18492 24850 9 - Ret 1 64 212 0 372 ENST00000442898 18174 18380 9 - Spl 1 64 212 0 373 ENST00000442898 18492 24850 9 - Ret 1 56 291 @@ -640,15 +640,15 @@ 0 374 ENST00000442898 17855 18027 9 - Spl 1 56 291 0 375 ENST00000442898 18492 24850 9 - Ret 0 64 272 0 375 ENST00000442898 18174 18380 9 - Spl 0 64 272 -0 376 ENST00000442898 17479 17718 9 - Spl 2 65 300 0 376 ENST00000442898 18174 18380 9 - Spl 2 65 300 +0 376 ENST00000442898 17479 17718 9 - Spl 2 65 300 0 377 ENST00000442898 18492 24850 9 - Ret 0 69 300 0 377 ENST00000442898 18174 18380 9 - Spl 0 69 300 -0 378 ENST00000442898 17479 17718 9 - Spl 1 62 300 0 378 ENST00000442898 18174 18380 9 - Spl 1 62 300 +0 378 ENST00000442898 17479 17718 9 - Spl 1 62 300 0 378 ENST00000442898 17855 18027 9 - Spl 1 62 300 -0 379 ENST00000442898 17479 17718 9 - Spl 0 63 298 0 379 ENST00000442898 17166 17343 9 - Spl 0 63 298 +0 379 ENST00000442898 17479 17718 9 - Spl 0 63 298 0 379 ENST00000442898 17855 18027 9 - Spl 0 63 298 0 380 ENST00000442898 17479 17718 9 - Spl 0 62 300 0 380 ENST00000442898 17855 18027 9 - Spl 0 62 300 @@ -657,28 +657,28 @@ 0 382 ENST00000442898 17855 18027 9 - Ret 2 59 300 0 383 ENST00000442898 17479 17718 9 - Ret 2 59 300 0 383 ENST00000442898 17855 18027 9 - Ret 2 59 300 -0 384 ENST00000442898 17479 17718 9 - Spl 2 65 300 0 384 ENST00000442898 18174 18380 9 - Spl 2 65 300 +0 384 ENST00000442898 17479 17718 9 - Spl 2 65 300 0 385 ENST00000442898 17479 17718 9 - Spl 0 60 299 0 385 ENST00000442898 17855 18027 9 - Spl 0 60 299 -0 386 ENST00000442898 17479 17718 9 - Spl 1 68 242 0 386 ENST00000442898 17166 17343 9 - Spl 1 68 242 +0 386 ENST00000442898 17479 17718 9 - Spl 1 68 242 0 387 ENST00000442898 17479 17718 9 - Ret 0 63 197 0 387 ENST00000442898 17855 18027 9 - Spl 0 63 197 0 388 ENST00000442898 18492 24850 9 - Ret 2 65 300 0 388 ENST00000442898 18174 18380 9 - Spl 2 65 300 0 389 ENST00000442898 25004 29601 9 - Ret 0 63 235 -0 390 ENST00000442898 17855 18027 9 - Spl 0 62 300 0 390 ENST00000442898 17166 17343 9 - Spl 0 62 300 +0 390 ENST00000442898 17855 18027 9 - Spl 0 62 300 0 391 ENST00000442898 17479 17718 9 - Spl 1 62 268 0 391 ENST00000442898 17855 18027 9 - Spl 1 62 268 0 392 ENST00000442898 18174 18380 9 - Spl 0 65 176 -0 393 ENST00000442898 17479 17718 9 - Spl 0 66 300 0 393 ENST00000442898 18174 18380 9 - Spl 0 66 300 -0 394 ENST00000442898 17855 18027 9 - Spl 0 59 300 +0 393 ENST00000442898 17479 17718 9 - Spl 0 66 300 0 394 ENST00000442898 17166 17343 9 - Spl 0 59 300 -0 395 ENST00000442898 17479 17718 9 - Spl 0 66 300 +0 394 ENST00000442898 17855 18027 9 - Spl 0 59 300 0 395 ENST00000442898 18174 18380 9 - Spl 0 66 300 +0 395 ENST00000442898 17479 17718 9 - Spl 0 66 300 0 396 ENST00000442898 18492 24850 9 - Ret 0 59 262 0 396 ENST00000442898 18174 18380 9 - Spl 0 59 262 0 397 ENST00000442898 18174 18380 9 - Spl 1 55 275 @@ -697,9 +697,9 @@ 0 406 ENST00000442898 14940 15080 9 - Spl 0 49 293 0 407 ENST00000442898 18492 24850 9 - Ret 0 60 271 0 407 ENST00000442898 18174 18380 9 - Spl 0 60 271 +0 408 ENST00000442898 17166 17343 9 - Spl 0 63 298 0 408 ENST00000442898 17479 17718 9 - Spl 0 63 298 0 408 ENST00000442898 17855 18027 9 - Spl 0 63 298 -0 408 ENST00000442898 17166 17343 9 - Spl 0 63 298 0 409 ENST00000442898 18492 24850 9 - Ret 0 64 272 0 409 ENST00000442898 18174 18380 9 - Spl 0 64 272 0 410 ENST00000442898 18492 24850 9 - Ret 0 69 300 @@ -712,22 +712,22 @@ 0 414 ENST00000442898 18492 24850 9 - Spl 0 58 169 0 415 ENST00000442898 18492 24850 9 - Ret 0 57 277 0 415 ENST00000442898 18174 18380 9 - Spl 0 57 277 +0 416 ENST00000442898 17166 17343 9 - Spl 1 60 298 0 416 ENST00000442898 17479 17718 9 - Spl 1 60 298 0 416 ENST00000442898 17855 18027 9 - Spl 1 60 298 -0 416 ENST00000442898 17166 17343 9 - Spl 1 60 298 0 417 ENST00000442898 17479 17718 9 - Spl 1 65 262 0 417 ENST00000442898 17855 18027 9 - Spl 1 65 262 0 418 ENST00000442898 17855 18027 9 - Spl 0 47 149 0 419 ENST00000442898 18492 24850 9 - Ret 0 58 219 0 420 ENST00000442898 17855 18027 9 - Spl 1 48 152 0 421 ENST00000442898 15149 15908 9 - Spl 0 40 300 +0 422 ENST00000442898 17166 17343 9 - Spl 1 60 298 0 422 ENST00000442898 17479 17718 9 - Spl 1 60 298 0 422 ENST00000442898 17855 18027 9 - Spl 1 60 298 -0 422 ENST00000442898 17166 17343 9 - Spl 1 60 298 -0 423 ENST00000442898 17479 17718 9 - Spl 1 63 242 0 423 ENST00000442898 17166 17343 9 - Spl 1 63 242 -0 424 ENST00000442898 17479 17718 9 - Spl 1 63 242 +0 423 ENST00000442898 17479 17718 9 - Spl 1 63 242 0 424 ENST00000442898 17166 17343 9 - Spl 1 63 242 +0 424 ENST00000442898 17479 17718 9 - Spl 1 63 242 0 425 ENST00000442898 18174 18380 9 - Spl 1 62 181 0 426 ENST00000442898 16061 16717 9 - Ret 1 52 300 0 427 ENST00000442898 17479 17718 9 - Ret 0 61 282 @@ -736,13 +736,13 @@ 0 429 ENST00000442898 18174 18380 9 - Ret 0 52 281 0 430 ENST00000442898 17479 17718 9 - Spl 0 67 299 0 430 ENST00000442898 17855 18027 9 - Spl 0 67 299 -0 431 ENST00000442898 17479 17718 9 - Spl 0 59 300 0 431 ENST00000442898 17166 17343 9 - Spl 0 59 300 +0 431 ENST00000442898 17479 17718 9 - Spl 0 59 300 0 431 ENST00000442898 17855 18027 9 - Spl 0 59 300 -0 432 ENST00000442898 17479 17718 9 - Spl 2 65 300 0 432 ENST00000442898 18174 18380 9 - Spl 2 65 300 -0 433 ENST00000442898 17479 17718 9 - Spl 2 65 300 +0 432 ENST00000442898 17479 17718 9 - Spl 2 65 300 0 433 ENST00000442898 18174 18380 9 - Spl 2 65 300 +0 433 ENST00000442898 17479 17718 9 - Spl 2 65 300 0 434 ENST00000442898 18492 24850 9 - Spl 0 58 169 0 435 ENST00000442898 17166 17343 9 - Spl 0 62 300 0 435 ENST00000442898 17855 18027 9 - Spl 0 62 300 @@ -755,23 +755,23 @@ 0 441 ENST00000442898 18492 24850 9 - Ret 0 59 214 0 442 ENST00000442898 17479 17718 9 - Ret 0 45 213 0 442 ENST00000442898 17855 18027 9 - Ret 0 45 213 -0 443 ENST00000442898 17479 17718 9 - Spl 1 62 298 0 443 ENST00000442898 18174 18380 9 - Spl 1 62 298 +0 443 ENST00000442898 17479 17718 9 - Spl 1 62 298 0 444 ENST00000442898 18174 18380 9 - Ret 0 67 297 0 445 ENST00000442898 17479 17718 9 - Ret 0 61 282 0 445 ENST00000442898 17855 18027 9 - Spl 0 61 282 0 446 ENST00000442898 18492 24850 9 - Ret 0 63 272 0 446 ENST00000442898 18174 18380 9 - Spl 0 63 272 -0 447 ENST00000442898 17479 17718 9 - Spl 2 65 300 0 447 ENST00000442898 18174 18380 9 - Spl 2 65 300 -0 448 ENST00000442898 17479 17718 9 - Spl 0 68 293 +0 447 ENST00000442898 17479 17718 9 - Spl 2 65 300 0 448 ENST00000442898 17166 17343 9 - Spl 0 68 293 +0 448 ENST00000442898 17479 17718 9 - Spl 0 68 293 0 449 ENST00000442898 14940 15080 9 - Spl 0 49 208 0 450 ENST00000442898 18174 18380 9 - Ret 0 67 297 0 451 ENST00000442898 17855 18027 9 - Spl 0 48 125 +0 452 ENST00000442898 17166 17343 9 - Spl 0 59 300 0 452 ENST00000442898 17479 17718 9 - Spl 0 59 300 0 452 ENST00000442898 17855 18027 9 - Spl 0 59 300 -0 452 ENST00000442898 17166 17343 9 - Spl 0 59 300 0 453 ENST00000442898 17479 17718 9 - Spl 0 60 299 0 453 ENST00000442898 17855 18027 9 - Spl 0 60 299 0 454 ENST00000442898 18492 24850 9 - Spl 0 53 300 @@ -796,8 +796,8 @@ 0 466 ENST00000442898 18174 18380 9 - Spl 2 65 300 0 467 ENST00000442898 16876 16964 9 - Spl 1 49 289 0 467 ENST00000442898 16061 16717 9 - Spl 1 49 289 -0 468 ENST00000442898 17479 17718 9 - Spl 0 63 300 0 468 ENST00000442898 17166 17343 9 - Spl 0 63 300 +0 468 ENST00000442898 17479 17718 9 - Spl 0 63 300 0 468 ENST00000442898 17855 18027 9 - Spl 0 63 300 0 469 ENST00000442898 18174 18380 9 - Spl 1 55 275 0 469 ENST00000442898 17855 18027 9 - Spl 1 55 275 @@ -818,38 +818,38 @@ 0 481 ENST00000442898 14940 15080 9 - Spl 0 49 208 0 482 ENST00000442898 18492 24850 9 - Ret 0 58 219 0 483 ENST00000442898 18492 24850 9 - Ret 0 58 219 +0 484 ENST00000442898 14940 15080 9 - Ret 1 54 233 0 484 ENST00000442898 18492 24850 9 - Ret 1 54 233 0 484 ENST00000442898 16876 16964 9 - Ret 1 54 233 -0 484 ENST00000442898 14940 15080 9 - Ret 1 54 233 0 485 ENST00000442898 17479 17718 9 - Spl 0 62 293 0 485 ENST00000442898 17855 18027 9 - Spl 0 62 293 0 486 ENST00000442898 18492 24850 9 - Ret 1 57 299 0 486 ENST00000442898 18174 18380 9 - Spl 1 57 299 -0 487 ENST00000442898 17479 17718 9 - Spl 0 66 213 0 487 ENST00000442898 17166 17343 9 - Spl 0 66 213 +0 487 ENST00000442898 17479 17718 9 - Spl 0 66 213 0 488 ENST00000442898 18492 24850 9 - Ret 2 65 300 0 488 ENST00000442898 18174 18380 9 - Spl 2 65 300 0 489 ENST00000442898 18492 24850 9 - Ret 2 65 300 0 489 ENST00000442898 18174 18380 9 - Spl 2 65 300 0 490 ENST00000442898 16061 16717 9 - Ret 0 51 295 +0 491 ENST00000442898 17166 17343 9 - Spl 0 63 300 0 491 ENST00000442898 17479 17718 9 - Spl 0 63 300 0 491 ENST00000442898 17855 18027 9 - Spl 0 63 300 -0 491 ENST00000442898 17166 17343 9 - Spl 0 63 300 0 492 ENST00000442898 17479 17718 9 - Spl 0 64 270 0 492 ENST00000442898 17855 18027 9 - Spl 0 64 270 -0 493 ENST00000442898 17479 17718 9 - Spl 0 66 300 0 493 ENST00000442898 18174 18380 9 - Spl 0 66 300 -0 494 ENST00000442898 17479 17718 9 - Spl 0 66 300 +0 493 ENST00000442898 17479 17718 9 - Spl 0 66 300 0 494 ENST00000442898 18174 18380 9 - Spl 0 66 300 -0 495 ENST00000442898 17479 17718 9 - Spl 0 66 300 +0 494 ENST00000442898 17479 17718 9 - Spl 0 66 300 0 495 ENST00000442898 18174 18380 9 - Spl 0 66 300 +0 495 ENST00000442898 17479 17718 9 - Spl 0 66 300 0 496 ENST00000442898 17166 17343 9 - Spl 0 63 300 0 497 ENST00000442898 17479 17718 9 - Spl 2 61 193 0 497 ENST00000442898 17855 18027 9 - Spl 2 61 193 0 498 ENST00000442898 17479 17718 9 - Spl 0 60 292 0 498 ENST00000442898 17855 18027 9 - Spl 0 60 292 -0 499 ENST00000442898 17479 17718 9 - Spl 0 63 298 0 499 ENST00000442898 17166 17343 9 - Spl 0 63 298 +0 499 ENST00000442898 17479 17718 9 - Spl 0 63 298 0 499 ENST00000442898 17855 18027 9 - Spl 0 63 298 0 500 ENST00000442898 17479 17718 9 - Spl 1 65 262 0 500 ENST00000442898 17855 18027 9 - Spl 1 65 262 @@ -859,12 +859,12 @@ 0 503 ENST00000442898 17855 18027 9 - Spl 0 51 300 0 504 ENST00000442898 17479 17718 9 - Spl 0 60 299 0 504 ENST00000442898 17855 18027 9 - Spl 0 60 299 -0 505 ENST00000442898 17855 18027 9 - Spl 0 62 298 0 505 ENST00000442898 17166 17343 9 - Spl 0 62 298 +0 505 ENST00000442898 17855 18027 9 - Spl 0 62 298 0 506 ENST00000442898 18174 18380 9 - Ret 0 48 300 0 506 ENST00000442898 17855 18027 9 - Spl 0 48 300 -0 507 ENST00000442898 17479 17718 9 - Spl 0 66 300 0 507 ENST00000442898 18174 18380 9 - Spl 0 66 300 +0 507 ENST00000442898 17479 17718 9 - Spl 0 66 300 0 508 ENST00000442898 17479 17718 9 - Spl 0 62 300 0 508 ENST00000442898 17855 18027 9 - Spl 0 62 300 0 509 ENST00000442898 17479 17718 9 - Spl 0 62 300 @@ -884,17 +884,17 @@ 0 517 ENST00000442898 17166 17343 9 - Spl 0 63 300 0 518 ENST00000442898 17166 17343 9 - Spl 0 63 300 0 519 ENST00000442898 17166 17343 9 - Spl 0 63 300 -0 520 ENST00000442898 17855 18027 9 - Spl 0 62 298 0 520 ENST00000442898 17166 17343 9 - Spl 0 62 298 +0 520 ENST00000442898 17855 18027 9 - Spl 0 62 298 0 521 ENST00000442898 17479 17718 9 - Spl 0 64 270 0 521 ENST00000442898 17855 18027 9 - Spl 0 64 270 0 522 ENST00000442898 16061 16717 9 - Spl 1 48 273 0 523 ENST00000442898 16061 16717 9 - Ret 1 36 220 +0 524 ENST00000442898 17166 17343 9 - Spl 0 63 300 0 524 ENST00000442898 17479 17718 9 - Spl 0 63 300 0 524 ENST00000442898 17855 18027 9 - Spl 0 63 300 -0 524 ENST00000442898 17166 17343 9 - Spl 0 63 300 -0 525 ENST00000442898 17855 18027 9 - Spl 0 62 298 0 525 ENST00000442898 17166 17343 9 - Spl 0 62 298 +0 525 ENST00000442898 17855 18027 9 - Spl 0 62 298 0 526 ENST00000442898 17479 17718 9 - Spl 0 64 270 0 526 ENST00000442898 17855 18027 9 - Spl 0 64 270 0 527 ENST00000442898 18174 18380 9 - Spl 0 52 222 @@ -915,8 +915,8 @@ 0 535 ENST00000442898 18174 18380 9 - Spl 0 60 256 0 536 ENST00000442898 18492 24850 9 - Spl 0 60 256 0 536 ENST00000442898 18174 18380 9 - Spl 0 60 256 -0 537 ENST00000442898 17479 17718 9 - Spl 0 63 298 0 537 ENST00000442898 17166 17343 9 - Spl 0 63 298 +0 537 ENST00000442898 17479 17718 9 - Spl 0 63 298 0 537 ENST00000442898 17855 18027 9 - Spl 0 63 298 0 538 ENST00000442898 17479 17718 9 - Spl 1 65 267 0 538 ENST00000442898 17166 17343 9 - Spl 1 65 267 @@ -931,22 +931,22 @@ 0 543 ENST00000442898 18174 18380 9 - Spl 0 59 262 0 544 ENST00000442898 17855 18027 9 - Spl 0 35 300 0 545 ENST00000442898 17855 18027 9 - Spl 0 35 300 +0 546 ENST00000442898 17166 17343 9 - Spl 0 59 300 0 546 ENST00000442898 17479 17718 9 - Spl 0 59 300 0 546 ENST00000442898 17855 18027 9 - Spl 0 59 300 -0 546 ENST00000442898 17166 17343 9 - Spl 0 59 300 0 547 ENST00000442898 18492 24850 9 - Ret 1 60 292 0 548 ENST00000442898 18492 24850 9 - Ret 0 60 292 0 549 ENST00000442898 18492 24850 9 - Ret 1 57 216 0 550 ENST00000442898 17855 18027 9 - Spl 2 60 163 0 551 ENST00000442898 14940 15080 9 - Spl 0 48 267 -0 552 ENST00000442898 17479 17718 9 - Spl 1 63 242 0 552 ENST00000442898 17166 17343 9 - Spl 1 63 242 +0 552 ENST00000442898 17479 17718 9 - Spl 1 63 242 0 553 ENST00000442898 18174 18380 9 - Spl 0 51 300 0 553 ENST00000442898 17855 18027 9 - Spl 0 51 300 0 554 ENST00000442898 18492 24850 9 - Ret 2 65 300 0 554 ENST00000442898 18174 18380 9 - Spl 2 65 300 -0 555 ENST00000442898 17855 18027 9 - Spl 0 59 300 0 555 ENST00000442898 17166 17343 9 - Spl 0 59 300 +0 555 ENST00000442898 17855 18027 9 - Spl 0 59 300 0 556 ENST00000442898 17479 17718 9 - Spl 0 62 300 0 556 ENST00000442898 17855 18027 9 - Spl 0 62 300 0 557 ENST00000442898 18492 24850 9 - Spl 0 53 300 @@ -954,11 +954,11 @@ 0 558 ENST00000442898 18492 24850 9 - Spl 0 53 300 0 558 ENST00000442898 17855 18027 9 - Spl 0 53 300 0 559 ENST00000442898 18174 18380 9 - Spl 0 57 143 -0 560 ENST00000442898 17479 17718 9 - Spl 0 59 300 0 560 ENST00000442898 17166 17343 9 - Spl 0 59 300 +0 560 ENST00000442898 17479 17718 9 - Spl 0 59 300 0 560 ENST00000442898 17855 18027 9 - Spl 0 59 300 -0 561 ENST00000442898 17479 17718 9 - Spl 0 59 300 0 561 ENST00000442898 17166 17343 9 - Spl 0 59 300 +0 561 ENST00000442898 17479 17718 9 - Spl 0 59 300 0 561 ENST00000442898 17855 18027 9 - Spl 0 59 300 0 562 ENST00000442898 17855 18027 9 - Ret 2 36 300 0 563 ENST00000442898 17479 17718 9 - Ret 0 61 282 @@ -970,16 +970,16 @@ 0 566 ENST00000442898 18174 18380 9 - Spl 0 51 300 0 566 ENST00000442898 17855 18027 9 - Spl 0 51 300 0 567 ENST00000442898 17855 18027 9 - Spl 0 51 219 -0 568 ENST00000442898 17479 17718 9 - Spl 0 68 293 0 568 ENST00000442898 17166 17343 9 - Spl 0 68 293 +0 568 ENST00000442898 17479 17718 9 - Spl 0 68 293 0 569 ENST00000442898 25004 29601 9 - Ret 0 63 235 0 570 ENST00000442898 17479 17718 9 - Spl 0 62 202 0 570 ENST00000442898 17855 18027 9 - Spl 0 62 202 0 571 ENST00000442898 18174 18380 9 - Ret 2 41 288 -0 572 ENST00000442898 17479 17718 9 - Spl 1 63 242 0 572 ENST00000442898 17166 17343 9 - Spl 1 63 242 -0 573 ENST00000442898 17479 17718 9 - Spl 0 63 298 +0 572 ENST00000442898 17479 17718 9 - Spl 1 63 242 0 573 ENST00000442898 17166 17343 9 - Spl 0 63 298 +0 573 ENST00000442898 17479 17718 9 - Spl 0 63 298 0 573 ENST00000442898 17855 18027 9 - Spl 0 63 298 0 574 ENST00000442898 18492 24850 9 - Spl 0 60 256 0 574 ENST00000442898 18174 18380 9 - Spl 0 60 256 @@ -998,14 +998,14 @@ 0 582 ENST00000442898 18492 24850 9 - Ret 0 54 300 0 582 ENST00000442898 18174 18380 9 - Spl 0 54 300 0 583 ENST00000442898 16061 16717 9 - Spl 1 48 273 -0 584 ENST00000442898 17479 17718 9 - Spl 1 60 298 0 584 ENST00000442898 17166 17343 9 - Spl 1 60 298 +0 584 ENST00000442898 17479 17718 9 - Spl 1 60 298 0 584 ENST00000442898 17855 18027 9 - Spl 1 60 298 0 585 ENST00000442898 18492 24850 9 - Spl 0 58 169 0 586 ENST00000442898 18174 18380 9 - Ret 0 48 300 0 586 ENST00000442898 17855 18027 9 - Spl 0 48 300 -0 587 ENST00000442898 17855 18027 9 - Spl 0 62 298 0 587 ENST00000442898 17166 17343 9 - Spl 0 62 298 +0 587 ENST00000442898 17855 18027 9 - Spl 0 62 298 0 588 ENST00000442898 16061 16717 9 - Ret 0 38 268 0 588 ENST00000442898 15149 15908 9 - Spl 0 38 268 0 589 ENST00000442898 17479 17718 9 - Spl 1 65 300 @@ -1016,8 +1016,8 @@ 0 591 ENST00000442898 17855 18027 9 - Spl 0 62 298 0 592 ENST00000442898 17166 17343 9 - Spl 0 62 298 0 592 ENST00000442898 17855 18027 9 - Spl 0 62 298 -0 593 ENST00000442898 17479 17718 9 - Spl 0 66 300 0 593 ENST00000442898 18174 18380 9 - Spl 0 66 300 +0 593 ENST00000442898 17479 17718 9 - Spl 0 66 300 0 594 ENST00000442898 17479 17718 9 - Spl 0 60 299 0 594 ENST00000442898 17855 18027 9 - Spl 0 60 299 0 595 ENST00000442898 17479 17718 9 - Spl 0 62 300 @@ -1025,21 +1025,21 @@ 0 596 ENST00000442898 18492 24850 9 - Ret 0 45 118 0 597 ENST00000442898 17479 17718 9 - Ret 2 59 300 0 597 ENST00000442898 17855 18027 9 - Ret 2 59 300 -0 598 ENST00000442898 17479 17718 9 - Spl 1 68 242 0 598 ENST00000442898 17166 17343 9 - Spl 1 68 242 +0 598 ENST00000442898 17479 17718 9 - Spl 1 68 242 0 599 ENST00000442898 16061 16717 9 - Ret 0 51 295 0 600 ENST00000442898 16061 16717 9 - Ret 0 51 295 -0 601 ENST00000442898 17479 17718 9 - Spl 0 62 300 0 601 ENST00000442898 17166 17343 9 - Spl 0 62 300 -0 602 ENST00000442898 17479 17718 9 - Spl 0 68 293 +0 601 ENST00000442898 17479 17718 9 - Spl 0 62 300 0 602 ENST00000442898 17166 17343 9 - Spl 0 68 293 +0 602 ENST00000442898 17479 17718 9 - Spl 0 68 293 0 603 ENST00000442898 18492 24850 9 - Spl 1 60 256 0 603 ENST00000442898 18174 18380 9 - Spl 1 60 256 -0 604 ENST00000442898 17479 17718 9 - Spl 0 60 300 0 604 ENST00000442898 17166 17343 9 - Spl 0 60 300 +0 604 ENST00000442898 17479 17718 9 - Spl 0 60 300 0 604 ENST00000442898 17855 18027 9 - Spl 0 60 300 -0 605 ENST00000442898 17479 17718 9 - Spl 0 60 300 0 605 ENST00000442898 17166 17343 9 - Spl 0 60 300 +0 605 ENST00000442898 17479 17718 9 - Spl 0 60 300 0 605 ENST00000442898 17855 18027 9 - Spl 0 60 300 0 606 ENST00000442898 18492 24850 9 - Ret 1 56 284 0 606 ENST00000442898 18174 18380 9 - Ret 1 56 284 @@ -1071,8 +1071,8 @@ 0 624 ENST00000442898 17479 17718 9 - Ret 0 45 213 0 624 ENST00000442898 17855 18027 9 - Ret 0 45 213 0 625 ENST00000442898 18174 18380 9 - Ret 0 52 281 -0 626 ENST00000442898 17479 17718 9 - Spl 0 63 298 0 626 ENST00000442898 17166 17343 9 - Spl 0 63 298 +0 626 ENST00000442898 17479 17718 9 - Spl 0 63 298 0 626 ENST00000442898 17855 18027 9 - Spl 0 63 298 0 627 ENST00000442898 25004 29601 9 - Ret 0 63 235 0 628 ENST00000442898 18174 18380 9 - Ret 0 48 300 diff --git a/tests/_regtest_outputs/test_all_introns_counts_and_info.test_main[file_2].out b/tests/_regtest_outputs/test_all_introns_counts_and_info.test_main[file_2].out index 6971fb1..3870204 100644 --- a/tests/_regtest_outputs/test_all_introns_counts_and_info.test_main[file_2].out +++ b/tests/_regtest_outputs/test_all_introns_counts_and_info.test_main[file_2].out @@ -1,4 +1,4 @@ - Read_UID Transcript_id Start End Chr Strand Assignment Conversions Convertable Coverage + Read_UID Transcript_id Start End Chr Strand Assignment Conversions Convertible Coverage 0 1 ENST00000442898 16061 16717 9 - Ret 0 48 249 0 2 ENST00000442898 18174 18380 9 - Spl 0 45 203 0 2 ENST00000442898 17855 18027 9 - Spl 0 45 203 @@ -37,8 +37,8 @@ 0 21 ENST00000442898 17855 18027 9 - Spl 0 66 300 0 22 ENST00000442898 17479 17718 9 - Spl 0 66 300 0 22 ENST00000442898 17855 18027 9 - Spl 0 66 300 -0 23 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 23 ENST00000442898 18174 18380 9 - Spl 0 65 300 +0 23 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 24 ENST00000442898 18492 24850 9 - Spl 0 65 176 0 24 ENST00000442898 18174 18380 9 - Spl 0 65 176 0 25 ENST00000442898 18492 24850 9 - Spl 0 65 176 @@ -58,10 +58,10 @@ 0 33 ENST00000442898 17855 18027 9 - Spl 0 62 288 0 34 ENST00000442898 17479 17718 9 - Spl 0 62 288 0 34 ENST00000442898 17855 18027 9 - Spl 0 62 288 -0 35 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 35 ENST00000442898 18174 18380 9 - Spl 0 65 300 -0 36 ENST00000442898 17479 17718 9 - Spl 0 65 300 +0 35 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 36 ENST00000442898 18174 18380 9 - Spl 0 65 300 +0 36 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 37 ENST00000442898 17479 17718 9 - Spl 0 58 166 0 37 ENST00000442898 17855 18027 9 - Spl 0 58 166 0 38 ENST00000442898 18174 18380 9 - Spl 0 57 300 @@ -69,8 +69,8 @@ 0 39 ENST00000442898 17855 18027 9 - Spl 0 62 288 0 40 ENST00000442898 17479 17718 9 - Spl 0 65 234 0 40 ENST00000442898 17855 18027 9 - Spl 0 65 234 -0 41 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 41 ENST00000442898 18174 18380 9 - Spl 0 65 300 +0 41 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 42 ENST00000442898 16061 16717 9 - Ret 0 48 249 0 43 ENST00000442898 16061 16717 9 - Ret 0 48 249 0 44 ENST00000442898 18174 18380 9 - Spl 0 45 203 @@ -78,8 +78,8 @@ 0 45 ENST00000442898 17479 17718 9 - Spl 1 63 194 0 46 ENST00000442898 18174 18380 9 - Spl 0 50 221 0 46 ENST00000442898 17855 18027 9 - Spl 0 50 221 -0 47 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 47 ENST00000442898 18174 18380 9 - Spl 0 65 300 +0 47 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 48 ENST00000442898 18174 18380 9 - Spl 0 57 300 0 49 ENST00000442898 17479 17718 9 - Spl 0 65 234 0 49 ENST00000442898 17855 18027 9 - Spl 0 65 234 @@ -89,8 +89,8 @@ 0 52 ENST00000442898 17479 17718 9 - Spl 0 65 234 0 52 ENST00000442898 17855 18027 9 - Spl 0 65 234 0 53 ENST00000442898 18492 24850 9 - Ret 0 66 260 -0 54 ENST00000442898 17479 17718 9 - Spl 0 64 277 0 54 ENST00000442898 17166 17343 9 - Spl 0 64 277 +0 54 ENST00000442898 17479 17718 9 - Spl 0 64 277 0 55 ENST00000442898 16876 16964 9 - Spl 0 46 270 0 56 ENST00000442898 17479 17718 9 - Spl 0 66 300 0 56 ENST00000442898 17855 18027 9 - Spl 0 66 300 @@ -105,8 +105,8 @@ 0 62 ENST00000442898 17855 18027 9 - Spl 0 66 300 0 63 ENST00000442898 18492 24850 9 - Spl 0 59 227 0 63 ENST00000442898 18174 18380 9 - Spl 0 59 227 -0 64 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 64 ENST00000442898 18174 18380 9 - Spl 0 65 300 +0 64 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 65 ENST00000442898 18492 24850 9 - Ret 0 66 260 0 66 ENST00000442898 17479 17718 9 - Spl 0 65 234 0 66 ENST00000442898 17855 18027 9 - Spl 0 65 234 @@ -121,10 +121,10 @@ 0 73 ENST00000442898 18174 18380 9 - Spl 0 50 221 0 73 ENST00000442898 17855 18027 9 - Spl 0 50 221 0 74 ENST00000442898 16876 16964 9 - Spl 0 46 270 -0 75 ENST00000442898 17479 17718 9 - Spl 0 64 277 0 75 ENST00000442898 17166 17343 9 - Spl 0 64 277 -0 76 ENST00000442898 17479 17718 9 - Spl 0 64 277 +0 75 ENST00000442898 17479 17718 9 - Spl 0 64 277 0 76 ENST00000442898 17166 17343 9 - Spl 0 64 277 +0 76 ENST00000442898 17479 17718 9 - Spl 0 64 277 0 77 ENST00000442898 18492 24850 9 - Spl 0 59 227 0 77 ENST00000442898 18174 18380 9 - Spl 0 59 227 0 78 ENST00000442898 18492 24850 9 - Ret 0 66 260 @@ -173,21 +173,21 @@ 0 105 ENST00000442898 17479 17718 9 - Spl 0 63 194 0 106 ENST00000442898 18492 24850 9 - Spl 0 59 227 0 106 ENST00000442898 18174 18380 9 - Spl 0 59 227 -0 107 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 107 ENST00000442898 18174 18380 9 - Spl 0 65 300 +0 107 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 108 ENST00000442898 16061 16717 9 - Ret 0 48 249 0 109 ENST00000442898 16061 16717 9 - Ret 0 48 249 0 110 ENST00000442898 16061 16717 9 - Ret 0 48 249 0 111 ENST00000442898 17166 17343 9 - Spl 0 57 125 -0 112 ENST00000442898 17479 17718 9 - Spl 0 64 277 0 112 ENST00000442898 17166 17343 9 - Spl 0 64 277 +0 112 ENST00000442898 17479 17718 9 - Spl 0 64 277 0 113 ENST00000442898 16061 16717 9 - Ret 0 48 249 0 114 ENST00000442898 17479 17718 9 - Spl 0 58 166 0 114 ENST00000442898 17855 18027 9 - Spl 0 58 166 0 115 ENST00000442898 18492 24850 9 - Ret 0 66 260 0 116 ENST00000442898 18492 24850 9 - Ret 0 66 260 -0 117 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 117 ENST00000442898 18174 18380 9 - Spl 0 65 300 +0 117 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 118 ENST00000442898 18174 18380 9 - Spl 0 50 221 0 118 ENST00000442898 17855 18027 9 - Spl 0 50 221 0 119 ENST00000442898 18174 18380 9 - Spl 0 50 221 @@ -198,10 +198,10 @@ 0 122 ENST00000442898 18174 18380 9 - Spl 0 50 221 0 122 ENST00000442898 17855 18027 9 - Spl 0 50 221 0 123 ENST00000442898 16876 16964 9 - Spl 0 46 270 -0 124 ENST00000442898 17479 17718 9 - Spl 0 64 277 0 124 ENST00000442898 17166 17343 9 - Spl 0 64 277 -0 125 ENST00000442898 17479 17718 9 - Spl 0 65 300 +0 124 ENST00000442898 17479 17718 9 - Spl 0 64 277 0 125 ENST00000442898 18174 18380 9 - Spl 0 65 300 +0 125 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 126 ENST00000442898 16061 16717 9 - Ret 0 49 177 0 127 ENST00000442898 17479 17718 9 - Spl 0 62 288 0 127 ENST00000442898 17855 18027 9 - Spl 0 62 288 @@ -217,8 +217,8 @@ 0 133 ENST00000442898 17855 18027 9 - Spl 0 50 221 0 134 ENST00000442898 18492 24850 9 - Ret 0 66 260 0 135 ENST00000442898 18492 24850 9 - Ret 0 66 260 -0 136 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 136 ENST00000442898 18174 18380 9 - Spl 0 65 300 +0 136 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 137 ENST00000442898 18174 18380 9 - Spl 0 57 300 0 138 ENST00000442898 18492 24850 9 - Ret 0 66 260 0 139 ENST00000442898 18492 24850 9 - Ret 0 66 260 @@ -227,12 +227,12 @@ 0 141 ENST00000442898 16061 16717 9 - Ret 0 48 249 0 142 ENST00000442898 17479 17718 9 - Spl 0 62 288 0 142 ENST00000442898 17855 18027 9 - Spl 0 62 288 -0 143 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 143 ENST00000442898 18174 18380 9 - Spl 0 65 300 -0 144 ENST00000442898 17479 17718 9 - Spl 0 65 300 +0 143 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 144 ENST00000442898 18174 18380 9 - Spl 0 65 300 -0 145 ENST00000442898 17479 17718 9 - Spl 0 65 300 +0 144 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 145 ENST00000442898 18174 18380 9 - Spl 0 65 300 +0 145 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 146 ENST00000442898 17479 17718 9 - Spl 0 62 288 0 146 ENST00000442898 17855 18027 9 - Spl 0 62 288 0 147 ENST00000442898 18492 24850 9 - Ret 0 66 260 @@ -242,8 +242,8 @@ 0 150 ENST00000442898 17479 17718 9 - Spl 0 66 300 0 150 ENST00000442898 17855 18027 9 - Spl 0 66 300 0 151 ENST00000442898 16876 16964 9 - Spl 0 47 270 -0 152 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 152 ENST00000442898 18174 18380 9 - Spl 0 65 300 +0 152 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 153 ENST00000442898 17479 17718 9 - Spl 0 62 288 0 153 ENST00000442898 17855 18027 9 - Spl 0 62 288 0 154 ENST00000442898 17479 17718 9 - Spl 0 66 300 @@ -263,8 +263,8 @@ 0 162 ENST00000442898 18492 24850 9 - Ret 0 66 260 0 163 ENST00000442898 18174 18380 9 - Spl 0 50 221 0 163 ENST00000442898 17855 18027 9 - Spl 0 50 221 -0 164 ENST00000442898 17479 17718 9 - Spl 0 64 277 0 164 ENST00000442898 17166 17343 9 - Spl 0 64 277 +0 164 ENST00000442898 17479 17718 9 - Spl 0 64 277 0 165 ENST00000442898 17479 17718 9 - Spl 0 66 300 0 165 ENST00000442898 17855 18027 9 - Spl 0 66 300 0 166 ENST00000442898 18174 18380 9 - Spl 0 50 221 @@ -275,8 +275,8 @@ 0 168 ENST00000442898 17855 18027 9 - Spl 0 65 234 0 169 ENST00000442898 18174 18380 9 - Spl 0 57 300 0 170 ENST00000442898 18174 18380 9 - Spl 0 57 300 -0 171 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 171 ENST00000442898 18174 18380 9 - Spl 0 65 300 +0 171 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 172 ENST00000442898 18174 18380 9 - Spl 0 57 300 0 173 ENST00000442898 17479 17718 9 - Spl 0 62 288 0 173 ENST00000442898 17855 18027 9 - Spl 0 62 288 @@ -286,8 +286,8 @@ 0 175 ENST00000442898 17855 18027 9 - Spl 0 45 203 0 176 ENST00000442898 18174 18380 9 - Spl 0 45 203 0 176 ENST00000442898 17855 18027 9 - Spl 0 45 203 -0 177 ENST00000442898 17479 17718 9 - Spl 1 65 300 0 177 ENST00000442898 18174 18380 9 - Spl 1 65 300 +0 177 ENST00000442898 17479 17718 9 - Spl 1 65 300 0 178 ENST00000442898 18174 18380 9 - Spl 0 50 221 0 178 ENST00000442898 17855 18027 9 - Spl 0 50 221 0 179 ENST00000442898 17479 17718 9 - Spl 0 62 288 @@ -308,12 +308,12 @@ 0 187 ENST00000442898 17855 18027 9 - Spl 0 62 288 0 188 ENST00000442898 16061 16717 9 - Ret 0 48 249 0 189 ENST00000442898 16061 16717 9 - Ret 0 49 177 -0 190 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 190 ENST00000442898 18174 18380 9 - Spl 0 65 300 +0 190 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 191 ENST00000442898 17479 17718 9 - Spl 0 65 234 0 191 ENST00000442898 17855 18027 9 - Spl 0 65 234 -0 192 ENST00000442898 17479 17718 9 - Spl 0 64 277 0 192 ENST00000442898 17166 17343 9 - Spl 0 64 277 +0 192 ENST00000442898 17479 17718 9 - Spl 0 64 277 0 193 ENST00000442898 18492 24850 9 - Spl 0 59 227 0 193 ENST00000442898 18174 18380 9 - Spl 0 59 227 0 194 ENST00000442898 17479 17718 9 - Spl 0 65 234 @@ -330,17 +330,17 @@ 0 200 ENST00000442898 18174 18380 9 - Spl 0 57 300 0 201 ENST00000442898 16061 16717 9 - Ret 0 49 177 0 202 ENST00000442898 17479 17718 9 - Spl 0 63 194 -0 203 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 203 ENST00000442898 18174 18380 9 - Spl 0 65 300 -0 204 ENST00000442898 17479 17718 9 - Spl 0 65 300 +0 203 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 204 ENST00000442898 18174 18380 9 - Spl 0 65 300 +0 204 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 205 ENST00000442898 16876 16964 9 - Spl 0 46 270 0 206 ENST00000442898 16876 16964 9 - Spl 0 46 270 0 207 ENST00000442898 16876 16964 9 - Spl 0 46 270 0 208 ENST00000442898 18492 24850 9 - Spl 0 59 227 0 208 ENST00000442898 18174 18380 9 - Spl 0 59 227 -0 209 ENST00000442898 17479 17718 9 - Spl 0 64 277 0 209 ENST00000442898 17166 17343 9 - Spl 0 64 277 +0 209 ENST00000442898 17479 17718 9 - Spl 0 64 277 0 210 ENST00000442898 17479 17718 9 - Spl 0 66 300 0 210 ENST00000442898 17855 18027 9 - Spl 0 66 300 0 211 ENST00000442898 17479 17718 9 - Spl 0 65 234 @@ -372,8 +372,8 @@ 0 226 ENST00000442898 18492 24850 9 - Ret 0 66 260 0 227 ENST00000442898 16061 16717 9 - Ret 0 48 249 0 228 ENST00000442898 16061 16717 9 - Ret 0 48 249 -0 229 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 229 ENST00000442898 18174 18380 9 - Spl 0 65 300 +0 229 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 230 ENST00000442898 16876 16964 9 - Spl 0 47 270 0 231 ENST00000442898 16876 16964 9 - Spl 0 47 270 0 232 ENST00000442898 18492 24850 9 - Ret 0 66 260 @@ -386,8 +386,8 @@ 0 236 ENST00000442898 17855 18027 9 - Spl 0 65 234 0 237 ENST00000442898 18492 24850 9 - Spl 0 59 227 0 237 ENST00000442898 18174 18380 9 - Spl 0 59 227 -0 238 ENST00000442898 17479 17718 9 - Spl 0 64 277 0 238 ENST00000442898 17166 17343 9 - Spl 0 64 277 +0 238 ENST00000442898 17479 17718 9 - Spl 0 64 277 0 239 ENST00000442898 17479 17718 9 - Spl 0 62 288 0 239 ENST00000442898 17855 18027 9 - Spl 0 62 288 0 240 ENST00000442898 17479 17718 9 - Spl 0 62 288 @@ -397,8 +397,8 @@ 0 242 ENST00000442898 18492 24850 9 - Spl 0 59 227 0 242 ENST00000442898 18174 18380 9 - Spl 0 59 227 0 243 ENST00000442898 16061 16717 9 - Ret 0 48 249 -0 244 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 244 ENST00000442898 18174 18380 9 - Spl 0 65 300 +0 244 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 245 ENST00000442898 18174 18380 9 - Spl 0 57 300 0 246 ENST00000442898 18492 24850 9 - Ret 0 66 260 0 247 ENST00000442898 17479 17718 9 - Spl 0 63 194 @@ -421,12 +421,12 @@ 0 258 ENST00000442898 17855 18027 9 - Spl 0 62 288 0 259 ENST00000442898 17479 17718 9 - Spl 0 66 300 0 259 ENST00000442898 17855 18027 9 - Spl 0 66 300 -0 260 ENST00000442898 17479 17718 9 - Spl 0 64 277 0 260 ENST00000442898 17166 17343 9 - Spl 0 64 277 +0 260 ENST00000442898 17479 17718 9 - Spl 0 64 277 0 261 ENST00000442898 18174 18380 9 - Spl 0 45 203 0 261 ENST00000442898 17855 18027 9 - Spl 0 45 203 -0 262 ENST00000442898 17479 17718 9 - Spl 0 63 277 0 262 ENST00000442898 17166 17343 9 - Spl 0 63 277 +0 262 ENST00000442898 17479 17718 9 - Spl 0 63 277 0 263 ENST00000442898 18492 24850 9 - Spl 0 65 176 0 263 ENST00000442898 18174 18380 9 - Spl 0 65 176 0 264 ENST00000442898 17479 17718 9 - Spl 0 65 234 @@ -440,16 +440,16 @@ 0 268 ENST00000442898 16061 16717 9 - Ret 0 48 249 0 269 ENST00000442898 17479 17718 9 - Spl 0 63 194 0 270 ENST00000442898 18492 24850 9 - Ret 1 66 260 -0 271 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 271 ENST00000442898 18174 18380 9 - Spl 0 65 300 +0 271 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 272 ENST00000442898 18174 18380 9 - Spl 0 45 203 0 272 ENST00000442898 17855 18027 9 - Spl 0 45 203 0 273 ENST00000442898 17479 17718 9 - Spl 0 66 300 0 273 ENST00000442898 17855 18027 9 - Spl 0 66 300 -0 274 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 274 ENST00000442898 18174 18380 9 - Spl 0 65 300 -0 275 ENST00000442898 17479 17718 9 - Spl 0 64 277 +0 274 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 275 ENST00000442898 17166 17343 9 - Spl 0 64 277 +0 275 ENST00000442898 17479 17718 9 - Spl 0 64 277 0 276 ENST00000442898 16876 16964 9 - Spl 0 46 270 0 277 ENST00000442898 17479 17718 9 - Spl 0 62 288 0 277 ENST00000442898 17855 18027 9 - Spl 0 62 288 @@ -470,10 +470,10 @@ 0 287 ENST00000442898 17855 18027 9 - Spl 0 66 300 0 288 ENST00000442898 18174 18380 9 - Spl 0 57 300 0 289 ENST00000442898 18174 18380 9 - Spl 0 57 300 -0 290 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 290 ENST00000442898 18174 18380 9 - Spl 0 65 300 -0 291 ENST00000442898 17479 17718 9 - Spl 0 65 300 +0 290 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 291 ENST00000442898 18174 18380 9 - Spl 0 65 300 +0 291 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 292 ENST00000442898 18174 18380 9 - Spl 0 45 203 0 292 ENST00000442898 17855 18027 9 - Spl 0 45 203 0 293 ENST00000442898 17479 17718 9 - Spl 0 62 288 @@ -510,8 +510,8 @@ 0 311 ENST00000442898 18174 18380 9 - Spl 0 65 176 0 312 ENST00000442898 18174 18380 9 - Spl 0 50 221 0 312 ENST00000442898 17855 18027 9 - Spl 0 50 221 -0 313 ENST00000442898 17479 17718 9 - Spl 0 64 277 0 313 ENST00000442898 17166 17343 9 - Spl 0 64 277 +0 313 ENST00000442898 17479 17718 9 - Spl 0 64 277 0 314 ENST00000442898 18174 18380 9 - Spl 0 50 221 0 314 ENST00000442898 17855 18027 9 - Spl 0 50 221 0 315 ENST00000442898 18492 24850 9 - Spl 0 59 227 @@ -519,12 +519,12 @@ 0 316 ENST00000442898 18174 18380 9 - Spl 0 57 300 0 317 ENST00000442898 18174 18380 9 - Spl 0 50 221 0 317 ENST00000442898 17855 18027 9 - Spl 0 50 221 -0 318 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 318 ENST00000442898 18174 18380 9 - Spl 0 65 300 -0 319 ENST00000442898 17479 17718 9 - Spl 0 64 277 +0 318 ENST00000442898 17479 17718 9 - Spl 0 65 300 0 319 ENST00000442898 17166 17343 9 - Spl 0 64 277 -0 320 ENST00000442898 17479 17718 9 - Spl 0 64 277 +0 319 ENST00000442898 17479 17718 9 - Spl 0 64 277 0 320 ENST00000442898 17166 17343 9 - Spl 0 64 277 +0 320 ENST00000442898 17479 17718 9 - Spl 0 64 277 0 321 ENST00000442898 16876 16964 9 - Spl 0 46 270 0 322 ENST00000442898 18174 18380 9 - Spl 0 50 221 0 322 ENST00000442898 17855 18027 9 - Spl 0 50 221