diff --git a/pyproject.toml b/pyproject.toml
index 0e5e0c1..f44688f 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -174,6 +174,9 @@ exclude = [
   "dist",
   "docs/source/conf.py",
   "isoslam/all_introns_counts_and_info.py",
+  "isoslam/pipeline_slam_3UIs.py",
+  "isoslam/pipeline_slam_3UIs/*.py",
+  "tests/__init__.py"
 ]
 # per-file-ignores = []
 line-length = 120