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slurm-cpu-bind-mask-generator

Generates bit masks for Slurm's cpu_bind:mask_cpu

If you ever needed to do a low-level cpu binding on SLURM, you know this page: [https://slurm.schedmd.com/mc_support.html#srun_lowlevelmc]

Example: if you have a 48-core compute node, and you want to pin 8 MPI processes with 6 OpenMPI threads each in your machine, you can just say: --cpus-per-task=6

And this will be your pinning:

CPU:
1                                              48
******------------------------------------------
------******------------------------------------
------------******------------------------------
------------------******------------------------
------------------------******------------------
------------------------------******------------
------------------------------------******------
------------------------------------------******

Slurm lets you do manual pinning, with the options --cpu_bind=map_cpu, and --cpi_bind=mask_cpu. This project is for the second. For example,

srun -n 2 --cpu_bind=mask_cpu:0x3,0xC

spawns two tasks pinned to cores 0 and 1 (0x3 = 3 = 20 + 21) and cores 2 and 3 (0xC = 11 = 22 + 23), respectively.

To write those pinnings by hand, in a big machine, is a PITA. So I wrote this little script.

Usage:

python3 maskgenerator.py <cores> <processes> [rank or -r]
  • Where cores are the number of SMT cores of your compute node,
  • processes are the number of MPI processes this node will run,
  • and [rank] is optionally the rank number to which a mask should be generated. If not, it generates a mask for all ranks.

The optional [-r] setting creates a aleatory distribution, so processes are pinned randomly. Useful to check if processes really benefit from advanced pinning.

Using it on JUBE, the JUelich Benchmark Environment

<parameter name="cpu_bind_mask" separator=";" mode="shell">module load Python/3.6.6; python3 maskgenerator.py 48 ${taskspernode}</parameter>
<parameter name="args_starter" separator=";">--cpu_bind=verbose,mask_cpu:$cpu_bind_mask</parameter>