predicting new TCR peptide to existing cluster

[linuxbioinfoguy]

Hi, After I make the cluster by the Clustering/fit function, is there anyway or convenience way to predict a new incoming TCR peptide sequence and assign a (existing) cluster number to it. I know I can do it myself with some pattern search with the feature motif, but if I have thousands of pattern and it won't be efficient in doing that way. So just wondering if there is a better way of a existing function already.

Thanks!

Jason

[svalkiers]

Hi Jason,

Thanks for showing interest in ClusTCR. Currently, this functionality does not exist in ClusTCR so you will have to assign them manually. We are thinking about adding this functionality in the future, however.

Cheers.
Sebastiaan