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Definition of peaks at "Enhancer" #12

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Kaixin-Huang opened this issue Jan 4, 2024 · 0 comments

Kaixin-Huang commented Jan 4, 2024

Hi! Thank you for generously presenting your excellent codes!

I have a question about your definition of peaks at enhancer region.

After reading your codes in snATAC_TF-networks.Rmd My understanding about this is :

Using cicero to find out co-accessible peak pairs, and choose Peak1 overlapped with promoter region.
And the other pair of this peak1 should be at a potential enhancer region.

Is this correct ?

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