Improve indentation

Author: swo

_data/publications.yml

@@ -1,174 +1,174 @@
 - citation: '**SW Olesen**,  I Holmdahl, IR Ortega-Sanchez, M Biggerstaff,
-  JM Jones, ML McMorrow, KE Fleming-Dutra. Projecting maximum potential
-  demand for nirsevimab to protect eligible US infants and young children
-  against respiratory syncytial virus in the 2024/2025 season. *Vaccine* (2025).'
+    JM Jones, ML McMorrow, KE Fleming-Dutra. Projecting maximum potential
+    demand for nirsevimab to protect eligible US infants and young children
+    against respiratory syncytial virus in the 2024/2025 season. *Vaccine* (2025).'
   doi: 10.1016/j.vaccine.2025.127109
   pmid: 40209626
 - citation: 'NB Masters, I Holmdahl, PB Miller, CK Kumar, CM Herzog, PM
-  DeJonge, S Gretsch, SE Oliver, M Patel, DE Sugarman, BB Bruce, BF Borah, **SW
-  Olesen**. Real-time use of a dynamic model to measure the impact of public
-  health interventions on measles outbreak size and duration --- Chicago,
-  Illinois, 2024. *MMWR* (2024).'
+    DeJonge, S Gretsch, SE Oliver, M Patel, DE Sugarman, BB Bruce, BF Borah, **SW
+    Olesen**. Real-time use of a dynamic model to measure the impact of public
+    health interventions on measles outbreak size and duration --- Chicago,
+    Illinois, 2024. *MMWR* (2024).'
   doi: 10.15585/mmwr.mm7319a2
 - citation: 'Smith TC, Bart SM, Loh SM, Rothman J, Grubaugh ND, Gardner L,
-  Morfino RC, Rome BR, Rothstein AP, Li SL, Ernst E, **Olesen SW**, Walker AT,
-  Friedman CR, Guagliardo SA. SARS-CoV-2 Sample Positivity in Travellers Can
-  Predict Community Prevalence Rates: Data from the Traveller-Based Genomic
-  Surveillance Programme. *SSRN* (2024).'
+    Morfino RC, Rome BR, Rothstein AP, Li SL, Ernst E, **Olesen SW**, Walker AT,
+    Friedman CR, Guagliardo SA. SARS-CoV-2 Sample Positivity in Travellers Can
+    Predict Community Prevalence Rates: Data from the Traveller-Based Genomic
+    Surveillance Programme. *SSRN* (2024).'
   doi: 10.2139/ssrn.4720735
 - citation: 'QQ Yu, **SW Olesen**, C Duvallet, YH Grad. Assessment of sewer
-  connectivity in the United States and its implications for equity in
-  wastewater-based epidemiology. *PLOS Global Public Health* (2024).'
+    connectivity in the United States and its implications for equity in
+    wastewater-based epidemiology. *PLOS Global Public Health* (2024).'
   doi: 10.1371/journal.pgph.0003039
 - citation: 'RM Klevens, CCW Young, **SW Olesen**, A Osinski, D Church, J Muten, L
-  Chou, T Segal, K Cranston. Evaluation of wastewater surveillance for
-  SARS-CoV-2 in Massachusetts correctional facilities, 2020-2022. *Frontiers in
-  Water* (2023).'
+    Chou, T Segal, K Cranston. Evaluation of wastewater surveillance for
+    SARS-CoV-2 in Massachusetts correctional facilities, 2020-2022. *Frontiers in
+    Water* (2023).'
   doi: 10.3389/frwa.2023.1083316
 - citation: '**SW Olesen**, CCW Young, C Duvallet. White paper: The effect of
-  septic systems on wastewater-based epidemiology. *Zenodo* (2022).'
+    septic systems on wastewater-based epidemiology. *Zenodo* (2022).'
   doi: 10.5281/zenodo.7130725
 - citation: 'M Santiago, **SW Olesen**. White paper: Pathogen biomarkers in
-  wastewater, stool, and urine: an informal literature survey. (2022).'
+    wastewater, stool, and urine: an informal literature survey. (2022).'
   pdf: /files/papers/ww-pathogen-survey.pdf
 - citation: 'Bousbaine D, Fisch LI, London M, Bhagchandani P, Rezende de Castro
-  TB, Mimee M, **Olesen S**, Reis BS, VanInsberghe D, Bortolatto J, Poyet M,
-  Cheloha RW, Sidney J, Ling J, Gupta A, Lu TK, Sette A, Alm EJ, Moon JJ,
-  Victora GD, Mucida D, Ploegh HL, Bilate AM. conserved Bacteroidetes antigen
-  induces anti-inflammatory intestinal T lymphocytes. *Science* (2022).'
+    TB, Mimee M, **Olesen S**, Reis BS, VanInsberghe D, Bortolatto J, Poyet M,
+    Cheloha RW, Sidney J, Ling J, Gupta A, Lu TK, Sette A, Alm EJ, Moon JJ,
+    Victora GD, Mucida D, Ploegh HL, Bilate AM. conserved Bacteroidetes antigen
+    induces anti-inflammatory intestinal T lymphocytes. *Science* (2022).'
   doi: 10.1126/science.abg5645
 - citation: '**SW Olesen**. Uses of mathematical modeling to estimate the
-  impact of mass drug administration of antibiotics on antimicrobial resistance
-  within and between communities. *Infectious Diseases of Poverty* (2022).'
+    impact of mass drug administration of antibiotics on antimicrobial resistance
+    within and between communities. *Infectious Diseases of Poverty* (2022).'
   doi: 10.1186/s40249-022-00997-7
 - citation: '**SW Olesen** and E Trabert. Infectious disease modeling:
-  recommendations for public health decision makers. *Disaster Medicine and
-  Public Health Preparedness* (2022).'
+    recommendations for public health decision makers. *Disaster Medicine and
+    Public Health Preparedness* (2022).'
   doi: 10.1017/dmp.2022.99
-- citation: 'C Duvallet, F Wu, KA McElroy, M Imakaev, N Endo, A Xiao, J Zhang,
-  R Floyd-O'Sullivan, MM Powell, S Mendola, ST Wilson, F Cruz, T Melman, CL
-  Sathyanarayana, **SW Olesen**, TB Erickson, N Ghaeli, P Chai, EJ Alm, M
-  Matus. Nationwide Trends in COVID-19 Cases and SARS-CoV-2 RNA Wastewater
-  Concentrations in the United States. *ACS EST Water* (2022).'
+- citation: "C Duvallet, F Wu, KA McElroy, M Imakaev, N Endo, A Xiao, J Zhang,
+    R Floyd-O'Sullivan, MM Powell, S Mendola, ST Wilson, F Cruz, T Melman, CL
+    Sathyanarayana, **SW Olesen**, TB Erickson, N Ghaeli, P Chai, EJ Alm, M
+    Matus. Nationwide Trends in COVID-19 Cases and SARS-CoV-2 RNA Wastewater
+    Concentrations in the United States. *ACS EST Water* (2022)."
   doi: 10.1021/acsestwater.1c00434
 - citation: '**SW Olesen**, N Endo, C Duvallet. Interpreting Covid-19
-  wastewater monitoring data from buildings to support disease mitigation.
-  Proceedings: Public Health and Water Conference & Wastewater Disease
-  Surveillance Summit. Cincinnati, OH. (March 21-24, 2022).'
+    wastewater monitoring data from buildings to support disease mitigation.
+    Proceedings: Public Health and Water Conference & Wastewater Disease
+    Surveillance Summit. Cincinnati, OH. (March 21-24, 2022).'
   doi: 10.2175/193864718825158289
   pdf: /files/papers/2022-wef-olesen.pdf
 - citation: '**SW Olesen**. Blog: Polio and the early history of wastewater
   epidemiology. (2021).'
   pdf: /files/paper/biobot-polio.pdf
 - citation: '**SW Olesen**, S Kanjilal, SM Kissler, DS Sun, YH Grad.
-  Racial/ethnic disparities in antibiotic use and healthcare utilization,
+    Racial/ethnic disparities in antibiotic use and healthcare utilization,
   2016/2018. *medRxiv* (2021).'
   doi: 10.1101/2021.12.09.21266965
 - citation: 'N Sharara, N Endo, C Duvallet, N Ghaeli, M Matus, J Heussner, **SW
-  Olesen**, EJ Alm, PR Chai, TB Erickson. Wastewater network infrastructure in
-  public health: Applications and learnings from the COVID-19 pandemic. *PLOS
-  Global Public Health* (2021).'
+    Olesen**, EJ Alm, PR Chai, TB Erickson. Wastewater network infrastructure in
+    public health: Applications and learnings from the COVID-19 pandemic. *PLOS
+    Global Public Health* (2021).'
   doi: 10.1371/journal.pgph.0000061
   pmid: 34927170
   pmcid: PMC8682811
 - citation: '**SW Olesen**. Interpreting building-level Covid-19 wastewater
-  monitoring data. *figshare* (2021).'
+    monitoring data. *figshare* (2021).'
   doi: 10.6084/m9.figshare.16587068
   pdf: https://biobot.io/wp-content/uploads/2021/09/Interpreting_building-level_Covid-19_wastewater_monitoring_data.pdf
 - citation: '**SW Olesen**, M Imakaev, C Duvallet. Making waves: Defining the
-  lead time of wastewater-based epidemiology for COVID-19. *Water Research*
-  (2021).'
+    lead time of wastewater-based epidemiology for COVID-19. *Water Research*
+    (2021).'
   pmid: 34304074
   pmc: PMC8282235
   doi: 10.1016/j.watres.2021.117433
 - citation: 'DS Sun, SM Kissler, S Kanjilal, **SW Olesen**, M Lipsitch, YH
-  Grad. Analysis of multiple bacterial species and antibiotic classes reveals
-  large variation in the association between seasonal antibiotic use and
-  resistance *PLOS Biology* (2022).'
+    Grad. Analysis of multiple bacterial species and antibiotic classes reveals
+    large variation in the association between seasonal antibiotic use and
+    resistance *PLOS Biology* (2022).'
   doi: 10.1371/journal.pbio.3001579
 - citation: 'SM Kissler, JR Fauver, C Mack, **SW Olesen**, C Tai, KY Shiue, CC
-  Kalinich, S Jednak, IM Ott, CBF Vogels, J Wohlgemuth, J Weisberger, J
-  DiFiori, DJ Anderson, J Mancell, DD Ho, ND Grubaugh, YG Grad. Viral dynamics
-  of acute SARS-CoV-2 infection and applications to diagnostic and public
-  health strategies. *PLOS Biology* (2021).'
+    Kalinich, S Jednak, IM Ott, CBF Vogels, J Wohlgemuth, J Weisberger, J
+    DiFiori, DJ Anderson, J Mancell, DD Ho, ND Grubaugh, YG Grad. Viral dynamics
+    of acute SARS-CoV-2 infection and applications to diagnostic and public
+    health strategies. *PLOS Biology* (2021).'
   doi: 10.1371/journal.pbio.3001333
   pmid: 34252080
   pmcid: PMC8297933
 - citation: 'J Chen, A Zaman, B Ramakrishna, **SW Olesen**. Stool banking for
-  fecal microbiota transplantation: methods and operations at a large stool
-  bank. *Front Cell Infect Microbiol* (2021).'
+    fecal microbiota transplantation: methods and operations at a large stool
+    bank. *Front Cell Infect Microbiol* (2021).'
   doi: 10.3389/fcimb.2021.622949
 - citation: 'M Santiago, **SW Olesen**. 16S rRNA sequencing of samples from
-  universal stool bank donors. *BMC Research Notes* (2021).'
+    universal stool bank donors. *BMC Research Notes* (2021).'
   doi: 10.1186/s13104-021-05520-z
 - citation: 'A Zaman, T Qazi, P Pai, P Peters, S Nicolaysen, **SW Olesen**.
-  Carriage rates of multidrug-resistant organisms among prospective stool donors.
-  *The Lancet Infectious Diseases* (2021).'
+    Carriage rates of multidrug-resistant organisms among prospective stool donors.
+    *The Lancet Infectious Diseases* (2021).'
   doi: 10.1016/S1473-3099(21)00091-8
 - citation: '**SW Olesen**. Fecal microbiota transplantation "donor effects"
-  are not clinically relevant for *Clostridioides difficile* infection.
-  *Gastroenterology* (2020).'
+    are not clinically relevant for *Clostridioides difficile* infection.
+    *Gastroenterology* (2020).'
   doi: 10.1053/j.gastro.2020.12.057
   pmid: 33387515
 - citation: 'D Bousbaine, P Bhagchandani, M London, M Mimee, **SW Olesen**, M
-  Poyet,  RW Cheloha, J Sidney, J Ling, A Gupta, TK Lu, A Sette, EJ Alm, D
-  Mucida, AM Bilate, HL Ploegh. Antigen-specific induction of CD4+CD8αα+
-  intraepithelial T lymphocytes by *Bacteroidetes* species. *bioRxiv*
-  (submitted elsewhere).'
+    Poyet,  RW Cheloha, J Sidney, J Ling, A Gupta, TK Lu, A Sette, EJ Alm, D
+    Mucida, AM Bilate, HL Ploegh. Antigen-specific induction of CD4+CD8αα+
+    intraepithelial T lymphocytes by *Bacteroidetes* species. *bioRxiv*
+    (submitted elsewhere).'
   doi: 10.1101/2020.08.05.236513
 - citation: '**SW Olesen**. Power calculations for detecting differences in
-  efficacy of fecal microbiota donors. *Contemporary Clinical Trials
-  Communications* (2020).'
+    efficacy of fecal microbiota donors. *Contemporary Clinical Trials
+    Communications* (2020).'
   doi: 10.1016/j.conctc.2020.100674
   pmid: 33241161
   pmc: PMC7672275
 - citation: '**SW Olesen**, A Zaman, M Osman, B Ramakrishna. Modelling donor
-  screening strategies to reduce the risk of SARS-CoV-2 via fecal microbiota
-  transplantation. *Open Forum Infect Dis* (2020).'
+    screening strategies to reduce the risk of SARS-CoV-2 via fecal microbiota
+    transplantation. *Open Forum Infect Dis* (2020).'
   doi: 10.1093/ofid/ofaa499
   pmid: 33235890
   pmc: PMC7665722
 - citation: '**SW Olesen**, M Lipsitch, YH Grad. The role of "spillover"
-  in antibiotic resistance. *PNAS* (2020).'
+    in antibiotic resistance. *PNAS* (2020).'
   doi: 10.1073/pnas.2013694117
   pmid: 33139558
   pmc: PMC7682407
 - citation: 'L Mamoon, **SW Olesen**. Fecal microbiota transplants annually
-  and their positive clinical impact. *Clin Transl Gastroenterol* (2020).'
+    and their positive clinical impact. *Clin Transl Gastroenterol* (2020).'
   doi: 10.14309/ctg.0000000000000247
   pmid: 33259159
   pmc: PMC7594930
 - citation: 'C Zellmer, MRA Sater, MH Huntley, M Osman, **SW Olesen**, B
-  Ramakrishna. Shiga toxin-producing *E. coli* transmission via fecal
-  microbiota transplant. *Clin Infect Dis* (2020).'
+    Ramakrishna. Shiga toxin-producing *E. coli* transmission via fecal
+    microbiota transplant. *Clin Infect Dis* (2020).'
   doi: 10.1093/cid/ciaa1486
   pmid: 33159210
 - citation: '**SW Olesen**, Y Gerardin. Re-evaluating the evidence for fecal
-  microbiota transplantation "super-donors" in inflammatory bowel disease.
-  *Journal of Crohn''s and Colitis* (2020).'
+    microbiota transplantation "super-donors" in inflammatory bowel disease.
+    *Journal of Crohn''s and Colitis* (2020).'
   doi: 10.1093/ecco-jcc/jjaa170
   pdf: /files/papers/jjaa170.pdf
   pmid: 32808030
 - citation: 'AM Tsou, **SW Olesen** (co-first), EJ Alm, SB Snapper. 16S rRNA sequencing
-  analysis: the devil is in the details. *Gut Microbes* (2020).'
+    analysis: the devil is in the details. *Gut Microbes* (2020).'
   doi: 10.1080/19490976.2020.1747336
   pmid: 32329652
   pmc: PMC7524321
 - citation: '**SW Olesen**, P Panchal, J Chen, S Budree, M Osman. Global
-  disparities and underserved populations in fecal microbiota transplantation
-  research. *Lancet Gastro Hepatol* (2020).'
+    disparities and underserved populations in fecal microbiota transplantation
+    research. *Lancet Gastro Hepatol* (2020).'
   pdf: /files/papers/lancet-gastro-2020.pdf
   doi: 10.1016/S2468-1253(19)30452-2
   pmid: 32061326
 - citation: 'S Ryu, BJ Cowling, P Wu, **SW Olesen**, C Fraser, DS Sun, M Lipsitch, YH
-  Grad. Case-based surveillance of antimicrobial resistance with full susceptibility
-  profiles. *JAC Antimicrob Resist* (2019).'
+    Grad. Case-based surveillance of antimicrobial resistance with full susceptibility
+    profiles. *JAC Antimicrob Resist* (2019).'
   doi: 10.1093/jacamr/dlz070
   pmid: 32280945
   pmc: PMC7134534
 - citation: 'BJ Sutherland, **SW Olesen**, H Kusumaatmaja, JWR Morgan, DJ
-  Wales. Morphological analysis of chiral rod clusters from a coarse-grained
-  single-site chiral potential.  *Soft Matter* (2019).'
+    Wales. Morphological analysis of chiral rod clusters from a coarse-grained
+    single-site chiral potential.  *Soft Matter* (2019).'
   doi: 10.1039/C9SM01343A
   pmid: 31589219
 - citation: 'E Goldstein, **SW Olesen**, Z Karaca, CA Steiner, C Viboud, M Lipsitch.