msdial2cytoscape

Getting Started

Download Docker Desktop fow Windows from https://www.docker.com/products/docker-desktop
Install and Start Docker Desktop
Open http://github.com/kozo2/msdial2cytoscape/zipball/main/ with your browser. (Your browser should then start downloading a zip file.)
Unzip the downloaded zip file.
Open the dockercompose foler and double-click the run.bat file.
Open http://localhost:6080/vnc_auto.html in your browser. You should see a Cytoscape window.
Open http://localhost:8501/ in your browser. You should see a Streamlit app named "msdial2cytoscape".
Upload your Cytoscape cys file (e.g. "my_pathway.cys") from the 1.Opening cytoscape session link on the left in http://localhost:8501/ tab. (Then you should see your network in http://localhost:6080/vnc_auto.html tab.)
Upload your MS-DIAL alignment result table file (e.g. "my_msdial_result.txt") from the 2.Profile diagram mapping link on the left in http://localhost:8501/ tab. (Then you should see your MS-DIAL profile in http://localhost:6080/vnc_auto.html tab.)
Switch Bar / Box plot from the 3.Switching bar or box link on the left in http://localhost:8501/ tab.
Click 4. Download cys file link and Download cys button on the left in in http://localhost:8501/ tab to download the Cytoscape network session to your local PC.

Run following command in Terminal

docker-compose stop
docker pull kozo2/msdial2cytoscape:latest
docker-compose up -d