Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Use Dask to distribute runs of tskit.lshmm #3

Closed
szhan opened this issue Jun 7, 2023 · 1 comment
Closed

Use Dask to distribute runs of tskit.lshmm #3

szhan opened this issue Jun 7, 2023 · 1 comment

Comments

@szhan
Copy link
Owner

szhan commented Jun 7, 2023

Instead of running tskit.lshmm sequentially on each sample genome, use Dask to distribute the jobs locally, one job per sample genome.
@szhan
Copy link
Owner Author

szhan commented Jun 21, 2023

Addressed in a separate repo (see tsimpute issue 106). It is easiest to use concurrent.futures instead.

@szhan szhan closed this as completed Jun 21, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@szhan