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Refactor function to set HMM parameters Release #116: Commit 101b1ad pushed by szhan
August 20, 2023 06:02 1m 44s test_imputation
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August 20, 2023 06:02 1m 44s
Add genetic map and weights Release #115: Commit 5c781b9 pushed by szhan
August 20, 2023 05:39 56s test_imputation
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August 20, 2023 05:39 56s
Add draft implementation of BEAGLE 4.1 Release #114: Commit 20c3bf2 pushed by szhan
August 17, 2023 19:06 37s test_imputation
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August 17, 2023 19:06 37s
Add tests to check LS HMM of _tskit.lshmm compared to BEAGLE Release #113: Commit b4628f8 pushed by szhan
August 9, 2023 12:24 35s test_imputation
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August 9, 2023 12:24 35s
Show forward and backward probability matrices from tskit and BEAGLE Release #112: Commit dc0d3e9 pushed by szhan
August 9, 2023 12:24 35s test_imputation
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August 9, 2023 12:24 35s
Specify dtype of haplotype arrays Release #111: Commit cb35bb3 pushed by szhan
August 9, 2023 12:07 42s test_imputation
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August 9, 2023 12:07 42s
Add tests to check LS HMM of _tskit.lshmm compared to BEAGLE Release #110: Commit 9f865e8 pushed by szhan
August 9, 2023 11:49 45s test_imputation
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August 9, 2023 11:49 45s
Add tests to check LS HMM of _tskit.lshmm compared to BEAGLE Release #109: Commit 2993f2c pushed by szhan
August 9, 2023 10:55 33s test_imputation
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August 9, 2023 10:55 33s
Remove pandas dep from jeromekellher Release #108: Commit fb53f23 pushed by szhan
August 9, 2023 10:53 49s test_imputation
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August 9, 2023 10:53 49s
Fix ACGT from jeromekellher Release #107: Commit 260d93d pushed by szhan
August 9, 2023 10:48 35s test_imputation
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August 9, 2023 10:48 35s
Add tests to check LS HMM of tskit compared to BEAGLE Release #106: Commit 33bb3af pushed by szhan
August 9, 2023 10:23 41s test_imputation
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August 9, 2023 10:23 41s
Remove pandas dep for csv parsing Release #105: Commit 2345c72 pushed by jeromekelleher
August 9, 2023 09:20 36s test_imputation
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August 9, 2023 09:20 36s
Add get_tskit_forward_backward_matrices WIP Release #104: Commit 54081b3 pushed by szhan
August 9, 2023 08:39 41s test_imputation
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August 9, 2023 08:39 41s
Replace toy dataset Release #103: Commit 1f99589 pushed by szhan
August 8, 2023 22:03 48s test_imputation
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August 8, 2023 22:03 48s
Add tests to check LS HMM of tskit compared to BEAGLE Release #102: Commit b47db86 pushed by szhan
August 8, 2023 13:52 38s test_imputation
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August 8, 2023 13:52 38s
Add function to get forward and backward matrices from _tskit.lshmm WIP Release #101: Commit 200b6ab pushed by szhan
August 8, 2023 13:49 36s test_imputation
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August 8, 2023 13:49 36s
Minor refactoring Release #100: Commit 1679b1a pushed by szhan
August 8, 2023 13:47 38s test_imputation
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August 8, 2023 13:47 38s
Add tests to check LS HMM of tskit compared to BEAGLE Release #99: Commit d24e1e8 pushed by szhan
August 8, 2023 13:40 35s test_imputation
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August 8, 2023 13:40 35s
Minor clean up Release #98: Commit 343ef3d pushed by szhan
August 8, 2023 13:39 38s test_imputation
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August 8, 2023 13:39 38s
Use pandas to ingest matrix test before returning numpy array Release #97: Commit 899a6ae pushed by szhan
August 8, 2023 13:34 39s test_imputation
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August 8, 2023 13:34 39s
Add notes about VCF fed to BEAGLE Release #96: Commit 6180590 pushed by szhan
August 8, 2023 07:25 53s test_imputation
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August 8, 2023 07:25 53s
Add tests to check LS HMM of tskit compared to BEAGLE Release #95: Commit dfb4c54 pushed by szhan
August 8, 2023 07:13 1m 4s test_imputation
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August 8, 2023 07:13 1m 4s
Do TODO Release #94: Commit 8a7bb97 pushed by szhan
August 8, 2023 07:10 35s test_imputation
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August 8, 2023 07:10 35s
Fix errors Release #93: Commit 75096f1 pushed by szhan
August 8, 2023 07:01 38s test_imputation
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August 8, 2023 07:01 38s
Replace use of pandas with numpy Release #92: Commit 10543bd pushed by szhan
August 8, 2023 06:18 39s test_imputation
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August 8, 2023 06:18 39s
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