From f95beb44b1bfab77e9017982c1a36048d12d4a57 Mon Sep 17 00:00:00 2001 From: Zachary Szpiech Date: Mon, 14 Apr 2014 11:49:52 -0700 Subject: [PATCH 1/2] selscan no longer outputs scores with truncated decay curves (happening near chr boundaries). Also if EHH > EHH_CUTOFF but >= 1Mb from core, the curve is truncated and integrated to that point. --- src/selscan-main.cpp | 80 ++++++++++++++++++++++++++++++++++++-------- 1 file changed, 66 insertions(+), 14 deletions(-) diff --git a/src/selscan-main.cpp b/src/selscan-main.cpp index ee95157..54f1ceb 100644 --- a/src/selscan-main.cpp +++ b/src/selscan-main.cpp @@ -303,7 +303,7 @@ int main(int argc, char *argv[]) return 1; } - if(EHH1K < 1) + if (EHH1K < 1) { cerr << "ERROR: EHH1K must be > 0.\n"; return 1; @@ -331,9 +331,9 @@ int main(int argc, char *argv[]) return 1; } - if(EHH1K >= hapData->nhaps) + if (EHH1K >= hapData->nhaps) { - + } if (SINGLE_EHH) @@ -1287,6 +1287,7 @@ void calc_ihs(void *order) bool ALT = p->params->getBoolFlag(ARG_ALT); double MAF = p->params->getDoubleFlag(ARG_MAF); + int MAX_EXTEND = 1000000; double (*calc)(map &, int, bool) = p->calc; @@ -1330,7 +1331,7 @@ void calc_ihs(void *order) { pthread_mutex_lock(&mutex_log); (*flog) << "WARNING: Locus " << locusName[locus] - << " has MAF < " << MAF << ". Skipping calcualtion at this locus.\n"; + << " has MAF < " << MAF << ". Skipping calculation at " << locusName[locus] << "\n"; pthread_mutex_unlock(&mutex_log); ihs[locus] = MISSING; skipLocus = 0; @@ -1341,13 +1342,18 @@ void calc_ihs(void *order) { if (nextLocus < 0) { + pthread_mutex_lock(&mutex_log); + (*flog) << "WARNING: Reached chromosome edge before EHH decayed below " << EHH_CUTOFF + << ". Skipping calculation at " << locusName[locus] << "\n"; + pthread_mutex_unlock(&mutex_log); + skipLocus = 1; break; } else if (physicalPos[currentLocus] - physicalPos[nextLocus] > MAX_GAP) { pthread_mutex_lock(&mutex_log); (*flog) << "WARNING: Reached a gap of " << physicalPos[currentLocus] - physicalPos[nextLocus] - << "bp > " << MAX_GAP << "bp. Skipping calcualtion at this locus.\n"; + << "bp > " << MAX_GAP << "bp. Skipping calculation at " << locusName[locus] << "\n"; pthread_mutex_unlock(&mutex_log); skipLocus = 1; break; @@ -1398,7 +1404,7 @@ void calc_ihs(void *order) { pthread_mutex_lock(&mutex_log); (*flog) << "WARNING: locus " << locusName[locus] - << " (number " << locus + 1 << ") is monomorphic. Skipping calcualtion at this locus.\n"; + << " (number " << locus + 1 << ") is monomorphic. Skipping calculation at this locus.\n"; pthread_mutex_unlock(&mutex_log); skipLocus = 1; break; @@ -1423,6 +1429,9 @@ void calc_ihs(void *order) ancestral_ihh += 0.5 * scale * (geneticPos[currentLocus + 1] - geneticPos[currentLocus]) * (current_ancestral_ehh + previous_ancestral_ehh); previous_ancestral_ehh = current_ancestral_ehh; } + + //check if currentLocus is beyond 1Mb + if (physicalPos[locus] - physicalPos[currentLocus] >= MAX_EXTEND) break; } delete [] haplotypeList; @@ -1456,13 +1465,18 @@ void calc_ihs(void *order) { if (nextLocus > nloci - 1) { + pthread_mutex_lock(&mutex_log); + (*flog) << "WARNING: Reached chromosome edge before EHH decayed below " << EHH_CUTOFF + << ". Skipping calculation at " << locusName[locus] << "\n"; + pthread_mutex_unlock(&mutex_log); + skipLocus = 1; break; } else if (physicalPos[nextLocus] - physicalPos[currentLocus] > MAX_GAP) { pthread_mutex_lock(&mutex_log); (*flog) << "WARNING: Reached a gap of " << physicalPos[nextLocus] - physicalPos[currentLocus] - << "bp > " << MAX_GAP << "bp. Skipping calcualtion at this locus.\n"; + << "bp > " << MAX_GAP << "bp. Skipping calculation at " << locusName[locus] << "\n"; pthread_mutex_unlock(&mutex_log); skipLocus = 1; break; @@ -1507,7 +1521,7 @@ void calc_ihs(void *order) if (numDerived == 0 || numAncestral == 0) { //(*flog) << "WARNING: locus " << locusName[locus] - // << " (number " << locus+1 << ") is monomorphic. Skipping calcualtion at this locus.\n"; + // << " (number " << locus+1 << ") is monomorphic. Skipping calculation at this locus.\n"; skipLocus = 1; break; } @@ -1531,6 +1545,10 @@ void calc_ihs(void *order) ancestral_ihh += 0.5 * scale * (geneticPos[currentLocus] - geneticPos[currentLocus - 1]) * (current_ancestral_ehh + previous_ancestral_ehh); previous_ancestral_ehh = current_ancestral_ehh; } + + //check if currentLocus is beyond 1Mb + if (physicalPos[currentLocus] - physicalPos[locus] >= MAX_EXTEND) break; + } delete [] haplotypeList; @@ -1632,12 +1650,17 @@ void calc_soft_ihs(void *order) { if (nextLocus < 0) { + pthread_mutex_lock(&mutex_log); + (*flog) << "WARNING: Reached chromosome edge before EHH decayed below " << EHH_CUTOFF + << ". Skipping calculation at " << locusName[locus] << "\n"; + pthread_mutex_unlock(&mutex_log); + skipLocus = 1; break; } else if (physicalPos[currentLocus] - physicalPos[nextLocus] > MAX_GAP) { pthread_mutex_lock(&mutex_log); - (*flog) << "WARNING: Reached a gap of " << physicalPos[currentLocus] - physicalPos[nextLocus] << "bp > " << MAX_GAP << "bp. Skipping calcualtion at this locus.\n"; + (*flog) << "WARNING: Reached a gap of " << physicalPos[currentLocus] - physicalPos[nextLocus] << "bp > " << MAX_GAP << "bp. Skipping calculation at " << locusName[locus] << "\n"; pthread_mutex_unlock(&mutex_log); skipLocus = 1; break; @@ -1736,12 +1759,17 @@ void calc_soft_ihs(void *order) { if (nextLocus > nloci - 1) { + pthread_mutex_lock(&mutex_log); + (*flog) << "WARNING: Reached chromosome edge before EHH decayed below " << EHH_CUTOFF + << ". Skipping calculation at " << locusName[locus] << "\n"; + pthread_mutex_unlock(&mutex_log); + skipLocus = 1; break; } else if (physicalPos[nextLocus] - physicalPos[currentLocus] > MAX_GAP) { pthread_mutex_lock(&mutex_log); - (*flog) << "WARNING: Reached a gap of " << physicalPos[nextLocus] - physicalPos[currentLocus] << "bp > " << MAX_GAP << "bp. Skipping calcualtion at this locus.\n"; + (*flog) << "WARNING: Reached a gap of " << physicalPos[nextLocus] - physicalPos[currentLocus] << "bp > " << MAX_GAP << "bp. Skipping calculation at " << locusName[locus] << "\n"; pthread_mutex_unlock(&mutex_log); skipLocus = 1; break; @@ -1836,6 +1864,8 @@ void calc_xpihh(void *order) double EHH_CUTOFF = p->params->getDoubleFlag(ARG_CUTOFF); bool ALT = p->params->getBoolFlag(ARG_ALT); + int MAX_EXTEND = 1000000; + //Weird offset thing mentioned in Sabetti et al. (2007) that is apparently used to calculate iHH //subtract this from EHH when integrating //double offset = EHH_CUTOFF-(1.0/double(nhaps)); @@ -1934,11 +1964,19 @@ void calc_xpihh(void *order) while (current_pooled_ehh > EHH_CUTOFF) { - if (nextLocus < 0) break; + if (nextLocus < 0) + { + pthread_mutex_lock(&mutex_log); + (*flog) << "WARNING: Reached chromosome edge before EHH decayed below " << EHH_CUTOFF + << ". Skipping calculation at " << locusName[locus] << "\n"; + pthread_mutex_unlock(&mutex_log); + skipLocus = 1; + break; + } else if (physicalPos[currentLocus] - physicalPos[nextLocus] > MAX_GAP) { pthread_mutex_lock(&mutex_log); - (*flog) << "WARNING: Reached a gap of " << physicalPos[currentLocus] - physicalPos[nextLocus] << "bp > " << MAX_GAP << "bp. Skipping calcualtion at this locus.\n"; + (*flog) << "WARNING: Reached a gap of " << physicalPos[currentLocus] - physicalPos[nextLocus] << "bp > " << MAX_GAP << "bp. Skipping calculation at " << locusName[locus] << "\n"; pthread_mutex_unlock(&mutex_log); skipLocus = 1; break; @@ -1998,6 +2036,9 @@ void calc_xpihh(void *order) previous_pop2_ehh = current_pop2_ehh; previous_pooled_ehh = current_pooled_ehh; + + //check if currentLocus is beyond 1Mb + if (physicalPos[locus] - physicalPos[currentLocus] >= MAX_EXTEND) break; } delete [] haplotypeList1; @@ -2092,11 +2133,19 @@ void calc_xpihh(void *order) while (current_pooled_ehh > EHH_CUTOFF) { - if (nextLocus > nloci - 1) break; + if (nextLocus > nloci - 1) + { + pthread_mutex_lock(&mutex_log); + (*flog) << "WARNING: Reached chromosome edge before EHH decayed below " << EHH_CUTOFF + << ". Skipping calculation at " << locusName[locus] << "\n"; + pthread_mutex_unlock(&mutex_log); + skipLocus = 1; + break; + } else if (physicalPos[nextLocus] - physicalPos[currentLocus] > MAX_GAP) { pthread_mutex_lock(&mutex_log); - (*flog) << "WARNING: Reached a gap of " << physicalPos[nextLocus] - physicalPos[currentLocus] << "bp > " << MAX_GAP << "bp. Skipping calcualtion at this locus.\n"; + (*flog) << "WARNING: Reached a gap of " << physicalPos[nextLocus] - physicalPos[currentLocus] << "bp > " << MAX_GAP << "bp. Skipping calculation at " << locusName[locus] << "\n"; pthread_mutex_unlock(&mutex_log); skipLocus = 1; break; @@ -2156,6 +2205,9 @@ void calc_xpihh(void *order) previous_pop2_ehh = current_pop2_ehh; previous_pooled_ehh = current_pooled_ehh; + + //check if currentLocus is beyond 1Mb + if (physicalPos[currentLocus] - physicalPos[locus] >= MAX_EXTEND) break; } delete [] haplotypeList1; From c453e27ec7b097ca889b656d125845c597ba5a0b Mon Sep 17 00:00:00 2001 From: Zachary Szpiech Date: Mon, 14 Apr 2014 12:05:22 -0700 Subject: [PATCH 2/2] updated example --- example/example.ihs.log | 5975 +++++++++++++++++++++------------------ example/example.ihs.out | 1063 ++----- 2 files changed, 3519 insertions(+), 3519 deletions(-) diff --git a/example/example.ihs.log b/example/example.ihs.log index 6e1afc1..69217d1 100644 --- a/example/example.ihs.log +++ b/example/example.ihs.log @@ -1,2761 +1,3232 @@ -../src/selscan --ihs --hap example.hap --map example.map --out example +../src/selscan --ihs --hap example.hap --map example.map --out example --threads 10 Calculating iHS. Haplotypes filename: example.hap Map filename: example.map Output file: example.ihs.out -Threads: 1 +Threads: 10 Scale parameter: 20000 Max gap parameter: 200000 EHH cutoff value: 0.05 Alt flag set: no -WARNING: Locus Locus0 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus14 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus17 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus20 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus22 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus23 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus24 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus26 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus28 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus30 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus32 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus33 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus35 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus37 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus42 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus43 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus50 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus51 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus56 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus58 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus59 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus61 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus62 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus63 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus64 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus65 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus66 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus68 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus70 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus72 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus73 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus74 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus75 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus76 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus77 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus79 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus82 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus83 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus85 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus86 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus87 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus89 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus90 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus91 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus93 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus94 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus95 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus97 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus98 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus99 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus100 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus101 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus102 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus103 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus115 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus118 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus119 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus122 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus124 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus125 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus126 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus129 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus134 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus135 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus148 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus152 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus165 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus173 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus176 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus187 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus197 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus206 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus207 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus210 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus214 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus216 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus222 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus223 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus224 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus227 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus228 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus248 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus250 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus256 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus273 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus274 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus281 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus284 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus288 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus289 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus290 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus293 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus294 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus297 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus305 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus309 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus316 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus322 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus325 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus335 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus337 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus338 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus351 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus353 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus355 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus360 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus365 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus367 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus368 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus373 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus375 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus376 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus378 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus380 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus381 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus383 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus386 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus388 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus391 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus398 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus401 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus402 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus421 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus424 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus430 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus432 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus435 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus436 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus439 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus440 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus442 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus445 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus474 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus479 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus481 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus482 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus488 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus492 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus493 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus494 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus495 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus496 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus497 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus498 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus500 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus502 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus507 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus508 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus509 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus514 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus519 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus523 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus524 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus526 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus529 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus530 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus532 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus533 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus535 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus538 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus539 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus540 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus546 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus552 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus555 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus558 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus559 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus560 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus563 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus566 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus570 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus571 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus572 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus574 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus577 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus579 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus581 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus582 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus583 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus584 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus585 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus586 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus587 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus588 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus590 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus592 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus594 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus596 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus597 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus600 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus603 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus604 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus606 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus608 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus610 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus614 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus617 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus619 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus620 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus622 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus623 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus625 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus627 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus628 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus629 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus634 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus637 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus638 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus640 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus642 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus645 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus646 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus647 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus649 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus650 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus654 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus656 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus657 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus658 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus659 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus660 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus663 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus665 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus667 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus669 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus676 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus677 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus678 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus680 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus681 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus682 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus683 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus687 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus693 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus699 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus700 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus704 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus706 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus709 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus711 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus714 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus716 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus718 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus719 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus720 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus724 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus725 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus726 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus730 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus732 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus735 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus736 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus737 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus741 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus742 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus743 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus744 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus745 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus746 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus749 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus753 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus755 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus756 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus757 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus758 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus759 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus765 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus766 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus770 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus774 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus777 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus778 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus781 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus782 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus784 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus785 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus786 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus791 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus792 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus793 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus795 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus796 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus798 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus800 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus801 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus802 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus804 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus805 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus806 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus811 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus812 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus820 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus823 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus828 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus829 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus830 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus837 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus838 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus842 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus844 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus848 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus849 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus851 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus852 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus854 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus856 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus858 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus865 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus866 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus874 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus876 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus877 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus878 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus880 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus882 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus883 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus886 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus890 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus898 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus900 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus901 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus904 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus905 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus907 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus908 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus909 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus911 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus912 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus913 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus915 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus917 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus919 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus921 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus922 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus925 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus934 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus937 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus941 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus949 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus952 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus955 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus958 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus959 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus963 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus964 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus972 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus974 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus976 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus979 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus980 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus981 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus984 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus986 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus988 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus990 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus991 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus994 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus997 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1000 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1002 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1008 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1013 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1016 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1017 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1018 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1023 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1025 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1027 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1031 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1032 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1034 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1036 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1037 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1038 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1045 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1046 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1047 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1050 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1052 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1053 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1055 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1058 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1059 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1060 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1061 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1064 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1068 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1069 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1071 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1074 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1079 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1080 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1086 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1088 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1089 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1090 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1091 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1096 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1098 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1099 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1102 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1104 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1113 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1114 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1116 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1120 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1121 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1127 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1130 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1133 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1136 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1137 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1139 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1141 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1143 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1144 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1145 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1147 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1150 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1153 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1155 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1156 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1157 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1160 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1164 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1166 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1167 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1168 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1169 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1171 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1173 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1174 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1175 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1177 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1179 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1181 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1183 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1187 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1188 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1194 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1201 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1203 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1220 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1224 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1229 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1237 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1244 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1246 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1249 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1250 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1251 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1252 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1254 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1262 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1265 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1269 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1270 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1278 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1282 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1285 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1287 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1288 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1290 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1292 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1301 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1305 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1307 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1308 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1309 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1311 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1312 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1314 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1315 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1318 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1319 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1320 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1321 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1322 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1323 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1324 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1325 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1329 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1332 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1335 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1340 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1341 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1343 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1345 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1348 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1349 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1353 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1358 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1375 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1380 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1387 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1394 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1396 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1402 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1403 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1404 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1405 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1407 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1415 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1417 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1420 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1428 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1431 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1432 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1436 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1437 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1438 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1439 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1442 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1448 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1450 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1451 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1454 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1455 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1464 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1467 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1470 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1471 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1481 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1482 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1485 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1489 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1491 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1493 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1497 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1499 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1500 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1501 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1504 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1508 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1513 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1516 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1518 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1519 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1521 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1529 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1537 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1541 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1544 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1548 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1550 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1552 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1553 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1557 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1559 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1564 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1565 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1566 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1572 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1575 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1582 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1584 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1585 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1587 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1592 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1596 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1600 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1603 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1609 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1610 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1614 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1616 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1617 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1621 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1640 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1645 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1647 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1648 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1673 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1675 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1678 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1687 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1688 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1692 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1695 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1697 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1698 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1700 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1702 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1706 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1711 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1712 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1713 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1715 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1716 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1717 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1720 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1721 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1726 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1727 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1731 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1733 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1735 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1736 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1737 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1738 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1741 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1744 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1753 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1754 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1756 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1762 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1764 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1772 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1774 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1775 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1780 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1784 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1791 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1798 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1799 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1803 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1805 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1807 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1808 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1818 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1828 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1832 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1833 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1835 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1837 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1838 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1839 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1842 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1847 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1849 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1851 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1852 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1855 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1857 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1858 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1859 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1862 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1863 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1864 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1875 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1876 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1877 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1878 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1886 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1893 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1894 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1896 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1897 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1902 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1904 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1905 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1907 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1912 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1916 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1920 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1921 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1925 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1927 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1934 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1936 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1952 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1964 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1975 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1978 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1985 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1986 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1989 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus1998 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2008 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2022 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2036 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2037 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2041 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2042 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2043 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2063 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2065 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2070 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2073 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2085 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2091 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2096 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2097 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2099 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2103 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2110 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2111 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2115 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2118 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2119 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2125 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2126 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2127 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2129 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2131 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2132 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2133 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2135 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2137 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2143 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2144 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2152 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2153 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2158 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2159 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2163 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2167 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2171 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2175 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2186 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2189 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2191 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2198 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2211 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2212 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2217 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2222 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2231 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2234 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2237 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2241 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2242 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2244 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2246 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2248 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2250 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2253 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2255 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2257 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2262 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2263 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2267 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2270 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2275 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2276 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2278 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2282 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2283 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2291 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2302 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2308 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2309 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2313 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2316 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2322 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2323 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2325 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2326 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2335 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2341 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2345 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2347 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2350 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2354 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2355 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2357 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2359 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2361 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2363 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2374 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2376 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2380 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2381 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2385 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2386 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2395 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2399 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2404 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2408 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2410 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2411 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2417 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2418 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2425 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2427 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2434 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2441 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2444 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2445 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2448 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2449 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2451 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2455 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2460 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2461 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2462 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2471 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2472 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2473 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2476 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2478 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2481 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2482 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2486 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2487 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2493 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2495 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2496 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2500 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2503 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2506 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2511 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2515 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2516 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2517 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2518 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2519 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2526 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2527 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2536 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2537 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2540 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2543 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2545 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2546 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2552 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2554 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2557 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2559 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2560 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2566 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2567 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2572 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2573 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2574 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2575 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2576 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2583 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2586 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2593 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2598 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2608 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2611 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2612 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2613 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2616 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2624 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2627 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2632 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2633 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2634 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2635 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2638 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2642 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2648 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2649 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2657 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2665 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2670 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2672 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2676 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2681 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2682 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2685 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2700 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2705 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2716 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2717 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2718 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2728 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2735 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2743 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2745 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2753 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2755 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2758 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2759 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2768 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2769 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2770 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2771 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2772 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2774 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2775 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2778 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2795 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2797 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2807 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2809 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2813 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2816 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2818 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2819 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2823 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2829 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2832 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2836 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2839 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2842 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2843 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2848 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2855 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2860 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2861 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2863 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2871 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2874 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2880 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2882 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2883 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2886 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2889 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2894 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2896 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2899 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2900 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2902 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2909 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2911 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2912 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2915 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2916 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2921 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2926 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2931 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2932 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2939 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2941 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2947 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2955 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2956 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2960 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2970 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2972 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2973 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2975 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2977 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2980 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2986 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2995 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2997 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus2998 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3015 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3017 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3024 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3026 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3029 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3030 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3031 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3034 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3036 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3038 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3040 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3041 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3042 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3044 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3045 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3046 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3050 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3051 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3056 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3057 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3059 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3066 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3073 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3074 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3076 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3078 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3082 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3083 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3089 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3091 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3094 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3097 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3102 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3114 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3116 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3118 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3139 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3146 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3149 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3154 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3160 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3166 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3169 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3171 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3178 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3184 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3186 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3187 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3193 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3199 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3201 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3203 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3204 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3205 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3206 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3207 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3211 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3212 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3213 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3217 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3218 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3223 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3227 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3234 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3238 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3244 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3247 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3251 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3253 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3254 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3255 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3256 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3258 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3259 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3260 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3262 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3263 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3266 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3267 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3268 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3272 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3274 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3275 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3276 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3277 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3282 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3288 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3293 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3294 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3299 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3300 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3301 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3304 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3307 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3314 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3316 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3333 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3337 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3348 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3349 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3355 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3359 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3366 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3371 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3372 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3378 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3379 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3382 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3387 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3394 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3401 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3402 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3413 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3414 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3423 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3427 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3433 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3440 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3447 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3455 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3456 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3457 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3460 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3470 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3472 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3474 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3475 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3479 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3485 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3486 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3487 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3489 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3496 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3498 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3501 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3508 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3511 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3512 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3513 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3517 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3521 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3525 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3527 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3529 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3535 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3536 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3543 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3546 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3547 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3548 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3553 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3557 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3558 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3559 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3560 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3561 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3562 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3565 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3566 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3567 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3568 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3569 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3570 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3572 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3575 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3576 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3577 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3578 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3580 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3581 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3585 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3588 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3591 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3594 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3595 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3596 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3597 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3599 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3600 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3604 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3608 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3609 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3611 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3613 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3620 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3621 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3625 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3628 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3636 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3637 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3639 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3640 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3650 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3651 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3661 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3663 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3665 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3666 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3667 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3668 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3671 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3673 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3674 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3677 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3679 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3680 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3681 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3682 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3687 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3694 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3698 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3700 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3701 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3708 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3711 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3724 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3728 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3730 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3733 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3734 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3736 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3738 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3739 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3748 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3753 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3757 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3758 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3759 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3760 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3761 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3764 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3768 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3771 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3777 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3781 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3784 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3786 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3788 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3789 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3791 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3793 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3794 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3800 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3801 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3802 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3804 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3807 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3808 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3809 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3810 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3812 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3813 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3814 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3816 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3817 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3818 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3826 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3828 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3829 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3830 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3833 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3836 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3837 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3839 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3840 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3844 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3847 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3848 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3849 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3850 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3852 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3855 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3856 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3858 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3864 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3868 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3877 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3879 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3882 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3883 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3886 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3889 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3890 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3891 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3892 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3895 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3896 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3897 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3898 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3899 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3901 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3905 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3912 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3916 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3917 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3918 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3921 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3924 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3926 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3933 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3935 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3939 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3941 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3943 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3946 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3949 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3951 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3952 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3954 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3955 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3956 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3958 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3964 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3968 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3981 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3994 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3996 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus3997 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4003 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4004 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4012 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4017 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4019 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4025 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4026 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4029 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4030 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4033 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4036 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4037 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4039 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4042 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4043 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4044 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4046 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4048 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4051 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4052 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4054 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4055 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4056 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4058 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4059 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4060 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4061 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4062 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4063 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4064 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4065 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4066 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4067 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4072 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4073 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4074 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4076 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4079 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4080 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4089 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4092 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4095 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4098 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4101 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4102 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4103 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4104 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4108 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4110 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4114 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4122 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4123 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4126 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4127 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4132 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4138 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4139 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4148 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4150 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4154 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4155 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4156 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4157 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4158 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4159 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4161 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4162 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4166 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4167 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4168 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4169 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4174 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4177 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4179 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4180 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4188 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4191 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4193 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4199 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4200 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4201 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4205 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4208 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4209 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4210 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4211 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4213 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4214 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4218 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4219 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4225 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4227 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4230 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4239 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4249 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4251 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4252 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4257 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4262 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4264 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4267 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4269 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4270 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4276 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4277 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4278 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4281 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4286 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4289 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4290 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4293 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4295 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4296 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4298 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4300 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4301 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4302 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4304 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4308 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4312 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4313 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4315 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4317 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4321 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4322 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4324 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4326 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4327 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4331 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4334 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4335 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4336 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4339 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4340 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4344 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4345 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4346 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4347 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4348 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4349 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4350 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4351 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4352 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4353 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4354 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4355 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4356 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4359 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4366 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4379 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4386 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4388 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4397 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4400 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4401 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4407 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4408 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4409 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4413 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4414 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4416 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4424 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4434 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4439 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4440 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4455 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4467 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4468 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4471 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4475 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4476 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4477 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4482 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4484 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4485 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4486 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4487 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4489 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4490 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4504 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4505 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4507 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4509 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4516 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4519 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4520 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4521 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4522 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4526 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4529 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4531 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4535 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4536 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4537 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4541 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4542 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4543 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4545 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4546 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4547 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4549 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4559 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4561 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4562 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4563 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4572 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4574 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4577 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4581 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4582 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4587 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4588 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4590 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4592 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4595 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4596 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4597 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4598 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4600 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4601 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4603 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4605 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4607 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4608 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4609 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4610 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4611 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4613 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4615 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4617 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4619 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4621 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4622 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4627 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4634 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4636 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4637 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4638 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4641 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4648 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4653 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4661 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4662 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4663 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4664 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4667 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4668 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4669 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4672 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4677 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4681 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4682 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4684 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4686 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4688 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4689 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4690 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4691 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4692 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4693 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4698 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4701 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4703 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4708 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4709 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4716 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4719 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4720 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4733 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4734 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4740 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4747 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4748 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4749 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4753 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4755 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4756 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4762 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4770 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4771 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4772 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4773 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4774 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4775 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4776 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4777 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4782 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4785 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4789 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4793 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4795 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4806 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4817 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4823 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4824 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4826 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4827 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4830 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4834 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4839 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4844 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4846 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4849 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4852 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4854 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4856 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4862 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4867 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4868 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4880 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4883 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4890 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4891 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4893 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4897 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4899 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4900 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4901 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4904 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4906 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4907 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4908 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4909 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4910 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4913 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4916 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4918 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4919 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4921 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4922 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4923 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4924 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4925 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4932 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4934 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4936 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4937 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4940 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4946 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4947 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4953 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4955 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4964 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4966 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4968 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4970 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4971 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4972 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4976 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus4982 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5011 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5012 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5014 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5015 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5016 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5017 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5028 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5034 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5036 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5039 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5042 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5043 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5046 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5048 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5049 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5051 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5055 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5058 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5067 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5075 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5076 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5081 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5082 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5085 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5086 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5095 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5097 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5111 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5113 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5115 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5118 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5121 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5122 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5131 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5136 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5143 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5144 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5145 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5146 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5147 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5153 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5154 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5156 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5158 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5160 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5161 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5162 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5165 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5166 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5169 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5172 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5189 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5197 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5199 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5202 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5205 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5207 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5211 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5213 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5214 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5217 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5218 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5219 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5223 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5227 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5229 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5231 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5233 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5235 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5238 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5245 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5247 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5249 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5250 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5255 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5257 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5259 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5262 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5266 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5267 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5271 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5274 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5275 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5278 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5280 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5281 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5284 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5285 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5286 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5287 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5288 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5289 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5290 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5291 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5292 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5296 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5297 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5298 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5299 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5300 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5301 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5302 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5304 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5305 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5306 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5307 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5308 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5309 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5310 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5313 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5314 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5315 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5316 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5318 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5319 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5320 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5322 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5323 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5325 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5327 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5329 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5332 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5333 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5334 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5335 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5336 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5337 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5338 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5341 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5345 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5346 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5349 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5350 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5354 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5355 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5357 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5361 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5368 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5373 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5379 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5380 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5382 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5383 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5384 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5386 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5387 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5388 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5389 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5391 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5392 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5393 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5397 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5400 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5404 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5407 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5410 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5411 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5412 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5415 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5419 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5420 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5421 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5423 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5424 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5426 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5427 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5431 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5436 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5437 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5439 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5441 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5442 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5445 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5449 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5451 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5452 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5459 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5460 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5461 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5464 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5467 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5468 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5469 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5470 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5472 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5473 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5475 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5476 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5477 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5480 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5484 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5495 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5503 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5504 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5506 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5507 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5518 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5519 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5527 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5528 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5536 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5538 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5547 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5551 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5552 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5567 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5571 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5576 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5582 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5583 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5586 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5590 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5598 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5599 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5600 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5601 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5602 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5608 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5609 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5610 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5612 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5614 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5615 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5616 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5618 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5624 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5628 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5630 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5632 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5634 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5635 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5651 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5659 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5666 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5675 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5683 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5686 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5692 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5697 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5700 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5705 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5710 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5711 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5712 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5713 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5714 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5715 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5716 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5717 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5718 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5719 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5720 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5721 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5725 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5726 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5727 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5729 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5732 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5734 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5739 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5741 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5742 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5743 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5744 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5747 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5749 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5750 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5751 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5752 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5753 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5754 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5756 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5758 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5763 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5766 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5767 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5768 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5770 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5772 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5774 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5775 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5778 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5782 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5783 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5784 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5786 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5787 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5789 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5791 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5792 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5796 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5815 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5816 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5819 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5820 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5829 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5831 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5834 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5835 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5838 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5839 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5840 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5841 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5843 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5844 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5845 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5848 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5850 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5852 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5854 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5856 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5857 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5858 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5862 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5863 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5864 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5865 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5866 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5869 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5872 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5873 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5876 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5879 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5887 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5888 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5891 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5895 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5897 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5906 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5913 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5919 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5924 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5927 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5929 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5933 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5934 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5937 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5938 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5939 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5941 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5943 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5945 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5950 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5956 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5957 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5958 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5962 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5963 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5965 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5969 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5970 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5971 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5972 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5981 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5988 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5992 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5994 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5995 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus5999 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6004 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6006 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6008 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6009 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6010 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6013 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6018 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6020 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6021 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6026 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6027 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6033 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6034 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6035 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6036 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6037 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6040 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6042 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6043 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6045 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6046 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6051 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6052 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6054 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6055 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6056 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6057 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6059 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6060 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6063 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6064 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6065 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6066 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6067 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6073 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6077 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6081 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6086 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6088 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6099 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6110 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6112 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6122 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6123 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6125 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6131 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6135 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6136 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6138 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6139 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6141 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6142 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6143 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6145 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6146 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6153 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6154 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6156 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6168 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6169 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6172 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6173 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6176 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6182 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6190 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6204 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6208 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6212 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6214 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6216 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6219 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6222 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6227 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6229 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6230 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6233 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6234 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6235 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6237 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6238 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6240 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6243 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6248 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6250 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6251 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6253 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6255 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6256 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6257 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6262 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6265 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6270 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6278 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6279 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6280 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6281 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6282 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6283 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6284 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6288 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6302 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6308 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6309 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6310 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6311 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6315 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6329 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6330 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6332 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6333 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6339 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6340 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6343 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6346 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6349 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6354 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6361 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6366 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6369 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6370 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6377 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6378 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6379 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6385 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6386 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6389 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6390 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6391 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6396 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6401 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6402 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6408 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6412 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6419 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6421 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6422 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6423 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6428 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6431 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6434 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6435 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6436 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6437 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6438 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6441 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6444 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6446 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6453 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6454 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6460 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6469 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6470 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6472 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6473 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6477 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6483 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6486 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6487 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6488 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6491 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6499 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6502 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6503 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6516 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6520 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6523 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6524 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6526 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6527 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6528 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6529 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6534 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6535 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6536 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6537 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6539 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6547 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6550 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6552 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6555 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6556 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6564 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6566 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6571 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6572 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6574 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6578 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6601 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6609 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6610 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6614 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6615 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6619 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6623 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6628 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6637 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6644 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6647 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6654 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6656 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6661 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6662 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6665 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6666 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6675 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6678 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6679 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6710 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6714 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6722 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6735 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6739 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6745 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6746 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6749 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6750 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6755 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6756 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6757 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6758 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6759 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6761 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6764 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6765 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6767 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6768 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6769 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6781 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6783 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6784 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6785 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6787 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6791 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6792 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6795 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6804 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6807 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6810 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6812 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6815 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6820 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6822 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6823 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6824 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6825 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6830 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6833 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6835 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6837 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6838 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6840 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6848 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6849 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6860 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6862 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6864 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6865 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6866 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6867 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6868 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6870 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6878 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6884 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6885 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6890 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6901 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6903 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6905 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6906 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6913 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6915 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6916 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6918 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6922 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6928 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6929 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6930 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6932 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6933 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6934 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6935 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6941 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6945 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6946 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6947 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6949 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6954 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6955 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6958 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6963 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6966 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6973 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6993 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6997 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus6998 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7003 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7017 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7018 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7021 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7022 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7023 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7025 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7028 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7031 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7034 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7040 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7045 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7049 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7051 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7053 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7055 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7060 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7061 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7067 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7068 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7070 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7071 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7074 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7080 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7084 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7086 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7087 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7088 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7091 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7094 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7098 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7103 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7106 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7114 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7115 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7116 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7117 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7119 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7120 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7121 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7123 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7127 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7130 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7131 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7132 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7134 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7137 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7140 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7143 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7146 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7148 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7150 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7154 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7155 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7158 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7162 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7167 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7172 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7173 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7174 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7176 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7179 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7182 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7183 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7184 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7185 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7189 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7191 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7192 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7193 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7196 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7201 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7202 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7203 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7204 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7206 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7210 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7215 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7217 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7219 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7220 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7223 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7224 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7227 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7228 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7231 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7236 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7237 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7238 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7239 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7240 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7241 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7242 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7243 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7245 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7246 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7247 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7249 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7250 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7256 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7257 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7260 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7261 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7262 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7264 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7266 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7267 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7268 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7270 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7271 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7273 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7274 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7276 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7280 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7282 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7285 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7286 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7288 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7290 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7292 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7299 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7302 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7306 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7309 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7314 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7315 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7317 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7320 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7324 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7328 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7330 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7332 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7334 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7340 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7341 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7342 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7346 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7358 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7363 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7364 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7369 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7371 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7372 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7374 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7377 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7381 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7382 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7385 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7387 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7388 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7389 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7391 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7393 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7395 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7396 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7397 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7399 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7404 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7407 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7409 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7410 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7411 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7416 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7426 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7427 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7430 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7433 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7434 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7435 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7438 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7441 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7442 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7444 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7445 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7447 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7449 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7451 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7454 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7455 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7457 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7461 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7462 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7463 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7464 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7465 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7466 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7467 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7470 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7471 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7476 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7478 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7481 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7488 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7492 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7493 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7497 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7498 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7499 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7500 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7505 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7507 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7509 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7510 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7511 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7515 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7518 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7519 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7521 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7523 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7524 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7525 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7526 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7527 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7529 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7533 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7535 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7536 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7541 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7544 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7547 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7549 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7550 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7551 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7554 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7562 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7564 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7565 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7570 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7576 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7578 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7581 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7587 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7598 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7604 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7605 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7611 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7621 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7629 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7637 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7638 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7640 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7641 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7647 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7648 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7650 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7651 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7653 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7655 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7657 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7658 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7662 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7663 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7671 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7674 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7675 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7678 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7682 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7685 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7690 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7694 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7696 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7697 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7698 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7699 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7706 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7707 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7710 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7713 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7719 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7723 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7725 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7726 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7729 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7737 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7738 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7739 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7744 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7746 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7750 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7751 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7756 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7758 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7761 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7763 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7767 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7769 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7774 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7775 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7776 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7777 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7778 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7779 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7780 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7781 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7783 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7789 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7792 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7793 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7794 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7795 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7798 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7799 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7806 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7807 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7813 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7814 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7816 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7817 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7818 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7822 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7824 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7825 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7826 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7827 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7828 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7829 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7830 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7832 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7835 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7836 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7838 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7839 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7843 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7844 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7847 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7848 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7849 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7850 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7853 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7854 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7855 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7857 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7860 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7861 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7863 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7864 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7866 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7867 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7868 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7873 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7874 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7877 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7882 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7888 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7894 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7895 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7900 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7901 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7904 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7905 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7908 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7911 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7914 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7917 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7918 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7920 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7921 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7922 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7924 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7930 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7936 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7941 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7943 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7944 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7945 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7946 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7949 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7951 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7955 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7959 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7962 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7963 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7967 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7968 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7974 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7980 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7983 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7984 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7985 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7986 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7987 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7990 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7991 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7993 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7994 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7995 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7997 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus7999 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8001 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8002 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8007 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8013 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8016 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8017 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8019 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8022 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8025 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8027 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8041 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8044 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8045 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8046 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8053 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8054 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8058 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8065 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8066 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8073 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8077 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8079 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8080 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8082 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8083 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8085 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8087 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8092 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8094 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8097 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8098 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8099 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8100 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8101 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8102 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8104 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8107 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8109 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8113 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8115 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8117 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8119 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8121 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8124 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8125 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8127 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8131 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8153 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8155 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8156 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8162 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8163 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8165 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8170 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8172 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8173 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8175 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8176 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8181 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8188 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8190 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8198 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8200 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8203 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8204 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8207 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8208 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8211 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8216 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8219 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8221 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8223 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8225 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8229 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8230 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8232 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8234 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8235 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8236 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8237 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8239 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8244 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8249 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8251 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8260 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8268 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8271 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8274 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8276 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8277 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8282 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8286 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8287 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8289 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8291 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8292 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8298 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8302 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8306 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8307 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8308 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8315 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8319 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8320 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8322 has MAF < 0.05. Skipping calcualtion at this locus. -WARNING: Locus Locus8323 has MAF < 0.05. Skipping calcualtion at this locus. +WARNING: Locus Locus7492 has MAF < 0.05. Skipping calculation at Locus7492 +WARNING: Locus Locus7493 has MAF < 0.05. Skipping calculation at Locus7493 +WARNING: Locus Locus0 has MAF < 0.05. Skipping calculation at Locus0 +WARNING: Locus Locus1 has MAF < 0.05. Skipping calculation at Locus1 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus2 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus3 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus4 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus5 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus6 +WARNING: Locus Locus7 has MAF < 0.05. Skipping calculation at Locus7 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus9 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus10 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus11 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus12 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus13 +WARNING: Locus Locus14 has MAF < 0.05. Skipping calculation at Locus14 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus15 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus16 +WARNING: Locus Locus17 has MAF < 0.05. Skipping calculation at Locus17 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus18 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus19 +WARNING: Locus Locus20 has MAF < 0.05. Skipping calculation at Locus20 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus21 +WARNING: Locus Locus22 has MAF < 0.05. Skipping calculation at Locus22 +WARNING: Locus Locus23 has MAF < 0.05. Skipping calculation at Locus23 +WARNING: Locus Locus24 has MAF < 0.05. Skipping calculation at Locus24 +WARNING: Locus Locus2500 has MAF < 0.05. Skipping calculation at Locus2500 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus25 +WARNING: Locus Locus26 has MAF < 0.05. Skipping calculation at Locus26 +WARNING: Locus Locus5829 has MAF < 0.05. Skipping calculation at Locus5829 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus27 +WARNING: Locus Locus28 has MAF < 0.05. Skipping calculation at Locus28 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus29 +WARNING: Locus Locus30 has MAF < 0.05. Skipping calculation at Locus30 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus31 +WARNING: Locus Locus32 has MAF < 0.05. Skipping calculation at Locus32 +WARNING: Locus Locus33 has MAF < 0.05. Skipping calculation at Locus33 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus34 +WARNING: Locus Locus35 has MAF < 0.05. Skipping calculation at Locus35 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus36 +WARNING: Locus Locus37 has MAF < 0.05. Skipping calculation at Locus37 +WARNING: Locus Locus5831 has MAF < 0.05. Skipping calculation at Locus5831 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus38 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus39 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus40 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus41 +WARNING: Locus Locus42 has MAF < 0.05. Skipping calculation at Locus42 +WARNING: Locus Locus43 has MAF < 0.05. Skipping calculation at Locus43 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus44 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus45 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus46 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus47 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus48 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus49 +WARNING: Locus Locus50 has MAF < 0.05. Skipping calculation at Locus50 +WARNING: Locus Locus51 has MAF < 0.05. Skipping calculation at Locus51 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus52 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus53 +WARNING: Locus Locus5834 has MAF < 0.05. Skipping calculation at Locus5834 +WARNING: Locus Locus5835 has MAF < 0.05. Skipping calculation at Locus5835 +WARNING: Locus Locus4166 has MAF < 0.05. Skipping calculation at Locus4166 +WARNING: Locus Locus4167 has MAF < 0.05. Skipping calculation at Locus4167 +WARNING: Locus Locus4168 has MAF < 0.05. Skipping calculation at Locus4168 +WARNING: Locus Locus4169 has MAF < 0.05. Skipping calculation at Locus4169 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus54 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus55 +WARNING: Locus Locus56 has MAF < 0.05. Skipping calculation at Locus56 +WARNING: Locus Locus58 has MAF < 0.05. Skipping calculation at Locus58 +WARNING: Locus Locus59 has MAF < 0.05. Skipping calculation at Locus59 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus833 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus60 +WARNING: Locus Locus61 has MAF < 0.05. Skipping calculation at Locus61 +WARNING: Locus Locus62 has MAF < 0.05. Skipping calculation at Locus62 +WARNING: Locus Locus63 has MAF < 0.05. Skipping calculation at Locus63 +WARNING: Locus Locus64 has MAF < 0.05. Skipping calculation at Locus64 +WARNING: Locus Locus65 has MAF < 0.05. Skipping calculation at Locus65 +WARNING: Locus Locus66 has MAF < 0.05. Skipping calculation at Locus66 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus67 +WARNING: Locus Locus68 has MAF < 0.05. Skipping calculation at Locus68 +WARNING: Locus Locus5838 has MAF < 0.05. Skipping calculation at Locus5838 +WARNING: Locus Locus5839 has MAF < 0.05. Skipping calculation at Locus5839 +WARNING: Locus Locus5840 has MAF < 0.05. Skipping calculation at Locus5840 +WARNING: Locus Locus5841 has MAF < 0.05. Skipping calculation at Locus5841 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus69 +WARNING: Locus Locus70 has MAF < 0.05. Skipping calculation at Locus70 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus71 +WARNING: Locus Locus72 has MAF < 0.05. Skipping calculation at Locus72 +WARNING: Locus Locus73 has MAF < 0.05. Skipping calculation at Locus73 +WARNING: Locus Locus74 has MAF < 0.05. Skipping calculation at Locus74 +WARNING: Locus Locus75 has MAF < 0.05. Skipping calculation at Locus75 +WARNING: Locus Locus76 has MAF < 0.05. Skipping calculation at Locus76 +WARNING: Locus Locus77 has MAF < 0.05. Skipping calculation at Locus77 +WARNING: Locus Locus6661 has MAF < 0.05. Skipping calculation at Locus6661 +WARNING: Locus Locus6662 has MAF < 0.05. Skipping calculation at Locus6662 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus78 +WARNING: Locus Locus79 has MAF < 0.05. Skipping calculation at Locus79 +WARNING: Locus Locus3333 has MAF < 0.05. Skipping calculation at Locus3333 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7494 +WARNING: Locus Locus5843 has MAF < 0.05. Skipping calculation at Locus5843 +WARNING: Locus Locus5844 has MAF < 0.05. Skipping calculation at Locus5844 +WARNING: Locus Locus5845 has MAF < 0.05. Skipping calculation at Locus5845 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus81 +WARNING: Locus Locus82 has MAF < 0.05. Skipping calculation at Locus82 +WARNING: Locus Locus83 has MAF < 0.05. Skipping calculation at Locus83 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus84 +WARNING: Locus Locus85 has MAF < 0.05. Skipping calculation at Locus85 +WARNING: Locus Locus86 has MAF < 0.05. Skipping calculation at Locus86 +WARNING: Locus Locus87 has MAF < 0.05. Skipping calculation at Locus87 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus88 +WARNING: Locus Locus89 has MAF < 0.05. Skipping calculation at Locus89 +WARNING: Locus Locus90 has MAF < 0.05. Skipping calculation at Locus90 +WARNING: Locus Locus91 has MAF < 0.05. Skipping calculation at Locus91 +WARNING: Locus Locus93 has MAF < 0.05. Skipping calculation at Locus93 +WARNING: Locus Locus94 has MAF < 0.05. Skipping calculation at Locus94 +WARNING: Locus Locus95 has MAF < 0.05. Skipping calculation at Locus95 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus96 +WARNING: Locus Locus97 has MAF < 0.05. Skipping calculation at Locus97 +WARNING: Locus Locus98 has MAF < 0.05. Skipping calculation at Locus98 +WARNING: Locus Locus99 has MAF < 0.05. Skipping calculation at Locus99 +WARNING: Locus Locus100 has MAF < 0.05. Skipping calculation at Locus100 +WARNING: Locus Locus101 has MAF < 0.05. Skipping calculation at Locus101 +WARNING: Locus Locus102 has MAF < 0.05. Skipping calculation at Locus102 +WARNING: Locus Locus103 has MAF < 0.05. Skipping calculation at Locus103 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus104 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus105 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus106 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus107 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus108 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus835 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus109 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus110 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus111 +WARNING: Locus Locus4174 has MAF < 0.05. Skipping calculation at Locus4174 +WARNING: Locus Locus3337 has MAF < 0.05. Skipping calculation at Locus3337 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus112 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus113 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus114 +WARNING: Locus Locus115 has MAF < 0.05. Skipping calculation at Locus115 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus116 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus117 +WARNING: Locus Locus118 has MAF < 0.05. Skipping calculation at Locus118 +WARNING: Locus Locus119 has MAF < 0.05. Skipping calculation at Locus119 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus120 +WARNING: Locus Locus5011 has MAF < 0.05. Skipping calculation at Locus5011 +WARNING: Locus Locus5012 has MAF < 0.05. Skipping calculation at Locus5012 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus836 +WARNING: Locus Locus837 has MAF < 0.05. Skipping calculation at Locus837 +WARNING: Locus Locus838 has MAF < 0.05. Skipping calculation at Locus838 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus121 +WARNING: Locus Locus122 has MAF < 0.05. Skipping calculation at Locus122 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus123 +WARNING: Locus Locus124 has MAF < 0.05. Skipping calculation at Locus124 +WARNING: Locus Locus125 has MAF < 0.05. Skipping calculation at Locus125 +WARNING: Locus Locus126 has MAF < 0.05. Skipping calculation at Locus126 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus127 +WARNING: Locus Locus4177 has MAF < 0.05. Skipping calculation at Locus4177 +WARNING: Locus Locus5014 has MAF < 0.05. Skipping calculation at Locus5014 +WARNING: Locus Locus5015 has MAF < 0.05. Skipping calculation at Locus5015 +WARNING: Locus Locus5016 has MAF < 0.05. Skipping calculation at Locus5016 +WARNING: Locus Locus5017 has MAF < 0.05. Skipping calculation at Locus5017 +WARNING: Locus Locus129 has MAF < 0.05. Skipping calculation at Locus129 +WARNING: Locus Locus2503 has MAF < 0.05. Skipping calculation at Locus2503 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus130 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus131 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus132 +WARNING: Locus Locus4179 has MAF < 0.05. Skipping calculation at Locus4179 +WARNING: Locus Locus4180 has MAF < 0.05. Skipping calculation at Locus4180 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus133 +WARNING: Locus Locus134 has MAF < 0.05. Skipping calculation at Locus134 +WARNING: Locus Locus135 has MAF < 0.05. Skipping calculation at Locus135 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7496 +WARNING: Locus Locus7497 has MAF < 0.05. Skipping calculation at Locus7497 +WARNING: Locus Locus7498 has MAF < 0.05. Skipping calculation at Locus7498 +WARNING: Locus Locus7499 has MAF < 0.05. Skipping calculation at Locus7499 +WARNING: Locus Locus7500 has MAF < 0.05. Skipping calculation at Locus7500 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus839 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus136 +WARNING: Locus Locus1673 has MAF < 0.05. Skipping calculation at Locus1673 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus138 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus6663 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus139 +WARNING: Locus Locus2506 has MAF < 0.05. Skipping calculation at Locus2506 +WARNING: Locus Locus5848 has MAF < 0.05. Skipping calculation at Locus5848 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus141 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus840 +WARNING: Locus Locus5850 has MAF < 0.05. Skipping calculation at Locus5850 +WARNING: Locus Locus1675 has MAF < 0.05. Skipping calculation at Locus1675 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus142 +WARNING: Locus Locus5852 has MAF < 0.05. Skipping calculation at Locus5852 +WARNING: Locus Locus5854 has MAF < 0.05. Skipping calculation at Locus5854 +WARNING: Locus Locus842 has MAF < 0.05. Skipping calculation at Locus842 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus144 +WARNING: Locus Locus5856 has MAF < 0.05. Skipping calculation at Locus5856 +WARNING: Locus Locus5857 has MAF < 0.05. Skipping calculation at Locus5857 +WARNING: Locus Locus5858 has MAF < 0.05. Skipping calculation at Locus5858 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7501 +WARNING: Locus Locus844 has MAF < 0.05. Skipping calculation at Locus844 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus145 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus146 +WARNING: Locus Locus1678 has MAF < 0.05. Skipping calculation at Locus1678 +WARNING: Locus Locus6665 has MAF < 0.05. Skipping calculation at Locus6665 +WARNING: Locus Locus6666 has MAF < 0.05. Skipping calculation at Locus6666 +WARNING: Locus Locus148 has MAF < 0.05. Skipping calculation at Locus148 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus149 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus150 +WARNING: Locus Locus5862 has MAF < 0.05. Skipping calculation at Locus5862 +WARNING: Locus Locus5863 has MAF < 0.05. Skipping calculation at Locus5863 +WARNING: Locus Locus5864 has MAF < 0.05. Skipping calculation at Locus5864 +WARNING: Locus Locus5865 has MAF < 0.05. Skipping calculation at Locus5865 +WARNING: Locus Locus5866 has MAF < 0.05. Skipping calculation at Locus5866 +WARNING: Locus Locus152 has MAF < 0.05. Skipping calculation at Locus152 +WARNING: Locus Locus5869 has MAF < 0.05. Skipping calculation at Locus5869 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus153 +WARNING: Locus Locus4188 has MAF < 0.05. Skipping calculation at Locus4188 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus154 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus155 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus156 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus157 +WARNING: Locus Locus5872 has MAF < 0.05. Skipping calculation at Locus5872 +WARNING: Locus Locus5873 has MAF < 0.05. Skipping calculation at Locus5873 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus158 +WARNING: Locus Locus2511 has MAF < 0.05. Skipping calculation at Locus2511 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus159 +WARNING: Locus Locus5028 has MAF < 0.05. Skipping calculation at Locus5028 +WARNING: Locus Locus4191 has MAF < 0.05. Skipping calculation at Locus4191 +WARNING: Locus Locus848 has MAF < 0.05. Skipping calculation at Locus848 +WARNING: Locus Locus849 has MAF < 0.05. Skipping calculation at Locus849 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus160 +WARNING: Locus Locus851 has MAF < 0.05. Skipping calculation at Locus851 +WARNING: Locus Locus852 has MAF < 0.05. Skipping calculation at Locus852 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus161 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus162 +WARNING: Locus Locus5876 has MAF < 0.05. Skipping calculation at Locus5876 +WARNING: Locus Locus854 has MAF < 0.05. Skipping calculation at Locus854 +WARNING: Locus Locus4193 has MAF < 0.05. Skipping calculation at Locus4193 +WARNING: Locus Locus856 has MAF < 0.05. Skipping calculation at Locus856 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus164 +WARNING: Locus Locus165 has MAF < 0.05. Skipping calculation at Locus165 +WARNING: Locus Locus858 has MAF < 0.05. Skipping calculation at Locus858 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus166 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus167 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus168 +WARNING: Locus Locus5879 has MAF < 0.05. Skipping calculation at Locus5879 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7503 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus169 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus170 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus171 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus172 +WARNING: Locus Locus173 has MAF < 0.05. Skipping calculation at Locus173 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus175 +WARNING: Locus Locus176 has MAF < 0.05. Skipping calculation at Locus176 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus177 +WARNING: Locus Locus2515 has MAF < 0.05. Skipping calculation at Locus2515 +WARNING: Locus Locus2516 has MAF < 0.05. Skipping calculation at Locus2516 +WARNING: Locus Locus2517 has MAF < 0.05. Skipping calculation at Locus2517 +WARNING: Locus Locus2518 has MAF < 0.05. Skipping calculation at Locus2518 +WARNING: Locus Locus2519 has MAF < 0.05. Skipping calculation at Locus2519 +WARNING: Locus Locus5034 has MAF < 0.05. Skipping calculation at Locus5034 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus178 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus179 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7504 +WARNING: Locus Locus7505 has MAF < 0.05. Skipping calculation at Locus7505 +WARNING: Locus Locus5036 has MAF < 0.05. Skipping calculation at Locus5036 +WARNING: Locus Locus5039 has MAF < 0.05. Skipping calculation at Locus5039 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus183 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus184 +WARNING: Locus Locus865 has MAF < 0.05. Skipping calculation at Locus865 +WARNING: Locus Locus866 has MAF < 0.05. Skipping calculation at Locus866 +WARNING: Locus Locus5042 has MAF < 0.05. Skipping calculation at Locus5042 +WARNING: Locus Locus5043 has MAF < 0.05. Skipping calculation at Locus5043 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus185 +WARNING: Locus Locus5887 has MAF < 0.05. Skipping calculation at Locus5887 +WARNING: Locus Locus5888 has MAF < 0.05. Skipping calculation at Locus5888 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus186 +WARNING: Locus Locus187 has MAF < 0.05. Skipping calculation at Locus187 +WARNING: Locus Locus4199 has MAF < 0.05. Skipping calculation at Locus4199 +WARNING: Locus Locus4200 has MAF < 0.05. Skipping calculation at Locus4200 +WARNING: Locus Locus4201 has MAF < 0.05. Skipping calculation at Locus4201 +WARNING: Locus Locus5046 has MAF < 0.05. Skipping calculation at Locus5046 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7506 +WARNING: Locus Locus7507 has MAF < 0.05. Skipping calculation at Locus7507 +WARNING: Locus Locus5891 has MAF < 0.05. Skipping calculation at Locus5891 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus189 +WARNING: Locus Locus1687 has MAF < 0.05. Skipping calculation at Locus1687 +WARNING: Locus Locus1688 has MAF < 0.05. Skipping calculation at Locus1688 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus190 +WARNING: Locus Locus5048 has MAF < 0.05. Skipping calculation at Locus5048 +WARNING: Locus Locus5049 has MAF < 0.05. Skipping calculation at Locus5049 +WARNING: Locus Locus5895 has MAF < 0.05. Skipping calculation at Locus5895 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus194 +WARNING: Locus Locus5051 has MAF < 0.05. Skipping calculation at Locus5051 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus195 +WARNING: Locus Locus197 has MAF < 0.05. Skipping calculation at Locus197 +WARNING: Locus Locus5055 has MAF < 0.05. Skipping calculation at Locus5055 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus6670 +WARNING: Locus Locus1692 has MAF < 0.05. Skipping calculation at Locus1692 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus200 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus202 +WARNING: Locus Locus5058 has MAF < 0.05. Skipping calculation at Locus5058 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus203 +WARNING: Locus Locus874 has MAF < 0.05. Skipping calculation at Locus874 +WARNING: Locus Locus3348 has MAF < 0.05. Skipping calculation at Locus3348 +WARNING: Locus Locus3349 has MAF < 0.05. Skipping calculation at Locus3349 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus204 +WARNING: Locus Locus876 has MAF < 0.05. Skipping calculation at Locus876 +WARNING: Locus Locus877 has MAF < 0.05. Skipping calculation at Locus877 +WARNING: Locus Locus878 has MAF < 0.05. Skipping calculation at Locus878 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7508 +WARNING: Locus Locus7509 has MAF < 0.05. Skipping calculation at Locus7509 +WARNING: Locus Locus7510 has MAF < 0.05. Skipping calculation at Locus7510 +WARNING: Locus Locus7511 has MAF < 0.05. Skipping calculation at Locus7511 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus205 +WARNING: Locus Locus206 has MAF < 0.05. Skipping calculation at Locus206 +WARNING: Locus Locus207 has MAF < 0.05. Skipping calculation at Locus207 +WARNING: Locus Locus210 has MAF < 0.05. Skipping calculation at Locus210 +WARNING: Locus Locus1695 has MAF < 0.05. Skipping calculation at Locus1695 +WARNING: Locus Locus5897 has MAF < 0.05. Skipping calculation at Locus5897 +WARNING: Locus Locus880 has MAF < 0.05. Skipping calculation at Locus880 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus213 +WARNING: Locus Locus214 has MAF < 0.05. Skipping calculation at Locus214 +WARNING: Locus Locus1697 has MAF < 0.05. Skipping calculation at Locus1697 +WARNING: Locus Locus1698 has MAF < 0.05. Skipping calculation at Locus1698 +WARNING: Locus Locus6675 has MAF < 0.05. Skipping calculation at Locus6675 +WARNING: Locus Locus216 has MAF < 0.05. Skipping calculation at Locus216 +WARNING: Locus Locus5067 has MAF < 0.05. Skipping calculation at Locus5067 +WARNING: Locus Locus1700 has MAF < 0.05. Skipping calculation at Locus1700 +WARNING: Locus Locus882 has MAF < 0.05. Skipping calculation at Locus882 +WARNING: Locus Locus883 has MAF < 0.05. Skipping calculation at Locus883 +WARNING: Locus Locus5906 has MAF < 0.05. Skipping calculation at Locus5906 +WARNING: Locus Locus6678 has MAF < 0.05. Skipping calculation at Locus6678 +WARNING: Locus Locus6679 has MAF < 0.05. Skipping calculation at Locus6679 +WARNING: Locus Locus222 has MAF < 0.05. Skipping calculation at Locus222 +WARNING: Locus Locus223 has MAF < 0.05. Skipping calculation at Locus223 +WARNING: Locus Locus224 has MAF < 0.05. Skipping calculation at Locus224 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7513 +WARNING: Locus Locus7515 has MAF < 0.05. Skipping calculation at Locus7515 +WARNING: Locus Locus227 has MAF < 0.05. Skipping calculation at Locus227 +WARNING: Locus Locus228 has MAF < 0.05. Skipping calculation at Locus228 +WARNING: Locus Locus886 has MAF < 0.05. Skipping calculation at Locus886 +WARNING: Locus Locus7518 has MAF < 0.05. Skipping calculation at Locus7518 +WARNING: Locus Locus7519 has MAF < 0.05. Skipping calculation at Locus7519 +WARNING: Locus Locus1702 has MAF < 0.05. Skipping calculation at Locus1702 +WARNING: Locus Locus5913 has MAF < 0.05. Skipping calculation at Locus5913 +WARNING: Locus Locus7521 has MAF < 0.05. Skipping calculation at Locus7521 +WARNING: Locus Locus7523 has MAF < 0.05. Skipping calculation at Locus7523 +WARNING: Locus Locus7524 has MAF < 0.05. Skipping calculation at Locus7524 +WARNING: Locus Locus7525 has MAF < 0.05. Skipping calculation at Locus7525 +WARNING: Locus Locus7526 has MAF < 0.05. Skipping calculation at Locus7526 +WARNING: Locus Locus7527 has MAF < 0.05. Skipping calculation at Locus7527 +WARNING: Locus Locus2526 has MAF < 0.05. Skipping calculation at Locus2526 +WARNING: Locus Locus2527 has MAF < 0.05. Skipping calculation at Locus2527 +WARNING: Locus Locus890 has MAF < 0.05. Skipping calculation at Locus890 +WARNING: Locus Locus7529 has MAF < 0.05. Skipping calculation at Locus7529 +WARNING: Locus Locus5075 has MAF < 0.05. Skipping calculation at Locus5075 +WARNING: Locus Locus5076 has MAF < 0.05. Skipping calculation at Locus5076 +WARNING: Locus Locus5919 has MAF < 0.05. Skipping calculation at Locus5919 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus234 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus235 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7530 +WARNING: Locus Locus4205 has MAF < 0.05. Skipping calculation at Locus4205 +WARNING: Locus Locus5081 has MAF < 0.05. Skipping calculation at Locus5081 +WARNING: Locus Locus5082 has MAF < 0.05. Skipping calculation at Locus5082 +WARNING: Locus Locus5924 has MAF < 0.05. Skipping calculation at Locus5924 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus892 +WARNING: Locus Locus5927 has MAF < 0.05. Skipping calculation at Locus5927 +WARNING: Locus Locus5085 has MAF < 0.05. Skipping calculation at Locus5085 +WARNING: Locus Locus5086 has MAF < 0.05. Skipping calculation at Locus5086 +WARNING: Locus Locus5929 has MAF < 0.05. Skipping calculation at Locus5929 +WARNING: Locus Locus7533 has MAF < 0.05. Skipping calculation at Locus7533 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus239 +WARNING: Locus Locus4208 has MAF < 0.05. Skipping calculation at Locus4208 +WARNING: Locus Locus4209 has MAF < 0.05. Skipping calculation at Locus4209 +WARNING: Locus Locus4210 has MAF < 0.05. Skipping calculation at Locus4210 +WARNING: Locus Locus4211 has MAF < 0.05. Skipping calculation at Locus4211 +WARNING: Locus Locus7535 has MAF < 0.05. Skipping calculation at Locus7535 +WARNING: Locus Locus7536 has MAF < 0.05. Skipping calculation at Locus7536 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus240 +WARNING: Locus Locus898 has MAF < 0.05. Skipping calculation at Locus898 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus242 +WARNING: Locus Locus3355 has MAF < 0.05. Skipping calculation at Locus3355 +WARNING: Locus Locus4213 has MAF < 0.05. Skipping calculation at Locus4213 +WARNING: Locus Locus4214 has MAF < 0.05. Skipping calculation at Locus4214 +WARNING: Locus Locus5933 has MAF < 0.05. Skipping calculation at Locus5933 +WARNING: Locus Locus5934 has MAF < 0.05. Skipping calculation at Locus5934 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus243 +WARNING: Locus Locus1706 has MAF < 0.05. Skipping calculation at Locus1706 +WARNING: Locus Locus900 has MAF < 0.05. Skipping calculation at Locus900 +WARNING: Locus Locus901 has MAF < 0.05. Skipping calculation at Locus901 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus244 +WARNING: Locus Locus904 has MAF < 0.05. Skipping calculation at Locus904 +WARNING: Locus Locus905 has MAF < 0.05. Skipping calculation at Locus905 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus245 +WARNING: Locus Locus7541 has MAF < 0.05. Skipping calculation at Locus7541 +WARNING: Locus Locus5095 has MAF < 0.05. Skipping calculation at Locus5095 +WARNING: Locus Locus5937 has MAF < 0.05. Skipping calculation at Locus5937 +WARNING: Locus Locus5938 has MAF < 0.05. Skipping calculation at Locus5938 +WARNING: Locus Locus5939 has MAF < 0.05. Skipping calculation at Locus5939 +WARNING: Locus Locus907 has MAF < 0.05. Skipping calculation at Locus907 +WARNING: Locus Locus908 has MAF < 0.05. Skipping calculation at Locus908 +WARNING: Locus Locus909 has MAF < 0.05. Skipping calculation at Locus909 +WARNING: Locus Locus5097 has MAF < 0.05. Skipping calculation at Locus5097 +WARNING: Locus Locus911 has MAF < 0.05. Skipping calculation at Locus911 +WARNING: Locus Locus912 has MAF < 0.05. Skipping calculation at Locus912 +WARNING: Locus Locus913 has MAF < 0.05. Skipping calculation at Locus913 +WARNING: Locus Locus915 has MAF < 0.05. Skipping calculation at Locus915 +WARNING: Locus Locus248 has MAF < 0.05. Skipping calculation at Locus248 +WARNING: Locus Locus917 has MAF < 0.05. Skipping calculation at Locus917 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus249 +WARNING: Locus Locus250 has MAF < 0.05. Skipping calculation at Locus250 +WARNING: Locus Locus919 has MAF < 0.05. Skipping calculation at Locus919 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus251 +WARNING: Locus Locus921 has MAF < 0.05. Skipping calculation at Locus921 +WARNING: Locus Locus922 has MAF < 0.05. Skipping calculation at Locus922 +WARNING: Locus Locus925 has MAF < 0.05. Skipping calculation at Locus925 +WARNING: Locus Locus5941 has MAF < 0.05. Skipping calculation at Locus5941 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus255 +WARNING: Locus Locus256 has MAF < 0.05. Skipping calculation at Locus256 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus257 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus258 +WARNING: Locus Locus5943 has MAF < 0.05. Skipping calculation at Locus5943 +WARNING: Locus Locus934 has MAF < 0.05. Skipping calculation at Locus934 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7542 +WARNING: Locus Locus1711 has MAF < 0.05. Skipping calculation at Locus1711 +WARNING: Locus Locus1712 has MAF < 0.05. Skipping calculation at Locus1712 +WARNING: Locus Locus1713 has MAF < 0.05. Skipping calculation at Locus1713 +WARNING: Locus Locus7544 has MAF < 0.05. Skipping calculation at Locus7544 +WARNING: Locus Locus937 has MAF < 0.05. Skipping calculation at Locus937 +WARNING: Locus Locus1715 has MAF < 0.05. Skipping calculation at Locus1715 +WARNING: Locus Locus1716 has MAF < 0.05. Skipping calculation at Locus1716 +WARNING: Locus Locus1717 has MAF < 0.05. Skipping calculation at Locus1717 +WARNING: Locus Locus941 has MAF < 0.05. Skipping calculation at Locus941 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7546 +WARNING: Locus Locus7547 has MAF < 0.05. Skipping calculation at Locus7547 +WARNING: Locus Locus1720 has MAF < 0.05. Skipping calculation at Locus1720 +WARNING: Locus Locus1721 has MAF < 0.05. Skipping calculation at Locus1721 +WARNING: Locus Locus5945 has MAF < 0.05. Skipping calculation at Locus5945 +WARNING: Locus Locus4218 has MAF < 0.05. Skipping calculation at Locus4218 +WARNING: Locus Locus4219 has MAF < 0.05. Skipping calculation at Locus4219 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7548 +WARNING: Locus Locus7549 has MAF < 0.05. Skipping calculation at Locus7549 +WARNING: Locus Locus7550 has MAF < 0.05. Skipping calculation at Locus7550 +WARNING: Locus Locus7551 has MAF < 0.05. Skipping calculation at Locus7551 +WARNING: Locus Locus2536 has MAF < 0.05. Skipping calculation at Locus2536 +WARNING: Locus Locus2537 has MAF < 0.05. Skipping calculation at Locus2537 +WARNING: Locus Locus273 has MAF < 0.05. Skipping calculation at Locus273 +WARNING: Locus Locus274 has MAF < 0.05. Skipping calculation at Locus274 +WARNING: Locus Locus1726 has MAF < 0.05. Skipping calculation at Locus1726 +WARNING: Locus Locus1727 has MAF < 0.05. Skipping calculation at Locus1727 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus277 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus279 +WARNING: Locus Locus1731 has MAF < 0.05. Skipping calculation at Locus1731 +WARNING: Locus Locus5111 has MAF < 0.05. Skipping calculation at Locus5111 +WARNING: Locus Locus281 has MAF < 0.05. Skipping calculation at Locus281 +WARNING: Locus Locus1733 has MAF < 0.05. Skipping calculation at Locus1733 +WARNING: Locus Locus3359 has MAF < 0.05. Skipping calculation at Locus3359 +WARNING: Locus Locus284 has MAF < 0.05. Skipping calculation at Locus284 +WARNING: Locus Locus1735 has MAF < 0.05. Skipping calculation at Locus1735 +WARNING: Locus Locus1736 has MAF < 0.05. Skipping calculation at Locus1736 +WARNING: Locus Locus1737 has MAF < 0.05. Skipping calculation at Locus1737 +WARNING: Locus Locus1738 has MAF < 0.05. Skipping calculation at Locus1738 +WARNING: Locus Locus5113 has MAF < 0.05. Skipping calculation at Locus5113 +WARNING: Locus Locus4225 has MAF < 0.05. Skipping calculation at Locus4225 +WARNING: Locus Locus5115 has MAF < 0.05. Skipping calculation at Locus5115 +WARNING: Locus Locus288 has MAF < 0.05. Skipping calculation at Locus288 +WARNING: Locus Locus289 has MAF < 0.05. Skipping calculation at Locus289 +WARNING: Locus Locus290 has MAF < 0.05. Skipping calculation at Locus290 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus948 +WARNING: Locus Locus949 has MAF < 0.05. Skipping calculation at Locus949 +WARNING: Locus Locus1741 has MAF < 0.05. Skipping calculation at Locus1741 +WARNING: Locus Locus4227 has MAF < 0.05. Skipping calculation at Locus4227 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7553 +WARNING: Locus Locus7554 has MAF < 0.05. Skipping calculation at Locus7554 +WARNING: Locus Locus2540 has MAF < 0.05. Skipping calculation at Locus2540 +WARNING: Locus Locus1744 has MAF < 0.05. Skipping calculation at Locus1744 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus292 +WARNING: Locus Locus293 has MAF < 0.05. Skipping calculation at Locus293 +WARNING: Locus Locus294 has MAF < 0.05. Skipping calculation at Locus294 +WARNING: Locus Locus952 has MAF < 0.05. Skipping calculation at Locus952 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus295 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus296 +WARNING: Locus Locus297 has MAF < 0.05. Skipping calculation at Locus297 +WARNING: Locus Locus5950 has MAF < 0.05. Skipping calculation at Locus5950 +WARNING: Locus Locus5118 has MAF < 0.05. Skipping calculation at Locus5118 +WARNING: Locus Locus4230 has MAF < 0.05. Skipping calculation at Locus4230 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus299 +WARNING: Locus Locus5121 has MAF < 0.05. Skipping calculation at Locus5121 +WARNING: Locus Locus5122 has MAF < 0.05. Skipping calculation at Locus5122 +WARNING: Locus Locus955 has MAF < 0.05. Skipping calculation at Locus955 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus301 +WARNING: Locus Locus2543 has MAF < 0.05. Skipping calculation at Locus2543 +WARNING: Locus Locus958 has MAF < 0.05. Skipping calculation at Locus958 +WARNING: Locus Locus959 has MAF < 0.05. Skipping calculation at Locus959 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus302 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus303 +WARNING: Locus Locus963 has MAF < 0.05. Skipping calculation at Locus963 +WARNING: Locus Locus964 has MAF < 0.05. Skipping calculation at Locus964 +WARNING: Locus Locus1753 has MAF < 0.05. Skipping calculation at Locus1753 +WARNING: Locus Locus1754 has MAF < 0.05. Skipping calculation at Locus1754 +WARNING: Locus Locus1756 has MAF < 0.05. Skipping calculation at Locus1756 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7557 +WARNING: Locus Locus5131 has MAF < 0.05. Skipping calculation at Locus5131 +WARNING: Locus Locus305 has MAF < 0.05. Skipping calculation at Locus305 +WARNING: Locus Locus2545 has MAF < 0.05. Skipping calculation at Locus2545 +WARNING: Locus Locus2546 has MAF < 0.05. Skipping calculation at Locus2546 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus307 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7558 +WARNING: Locus Locus3366 has MAF < 0.05. Skipping calculation at Locus3366 +WARNING: Locus Locus309 has MAF < 0.05. Skipping calculation at Locus309 +WARNING: Locus Locus972 has MAF < 0.05. Skipping calculation at Locus972 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus310 +WARNING: Locus Locus974 has MAF < 0.05. Skipping calculation at Locus974 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus311 +WARNING: Locus Locus976 has MAF < 0.05. Skipping calculation at Locus976 +WARNING: Locus Locus5956 has MAF < 0.05. Skipping calculation at Locus5956 +WARNING: Locus Locus5957 has MAF < 0.05. Skipping calculation at Locus5957 +WARNING: Locus Locus5958 has MAF < 0.05. Skipping calculation at Locus5958 +WARNING: Locus Locus5136 has MAF < 0.05. Skipping calculation at Locus5136 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus312 +WARNING: Locus Locus979 has MAF < 0.05. Skipping calculation at Locus979 +WARNING: Locus Locus980 has MAF < 0.05. Skipping calculation at Locus980 +WARNING: Locus Locus981 has MAF < 0.05. Skipping calculation at Locus981 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7559 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus313 +WARNING: Locus Locus3371 has MAF < 0.05. Skipping calculation at Locus3371 +WARNING: Locus Locus3372 has MAF < 0.05. Skipping calculation at Locus3372 +WARNING: Locus Locus1762 has MAF < 0.05. Skipping calculation at Locus1762 +WARNING: Locus Locus5962 has MAF < 0.05. Skipping calculation at Locus5962 +WARNING: Locus Locus5963 has MAF < 0.05. Skipping calculation at Locus5963 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus314 +WARNING: Locus Locus1764 has MAF < 0.05. Skipping calculation at Locus1764 +WARNING: Locus Locus5965 has MAF < 0.05. Skipping calculation at Locus5965 +WARNING: Locus Locus984 has MAF < 0.05. Skipping calculation at Locus984 +WARNING: Locus Locus986 has MAF < 0.05. Skipping calculation at Locus986 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus315 +WARNING: Locus Locus316 has MAF < 0.05. Skipping calculation at Locus316 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus317 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus319 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus987 +WARNING: Locus Locus988 has MAF < 0.05. Skipping calculation at Locus988 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus320 +WARNING: Locus Locus322 has MAF < 0.05. Skipping calculation at Locus322 +WARNING: Locus Locus990 has MAF < 0.05. Skipping calculation at Locus990 +WARNING: Locus Locus991 has MAF < 0.05. Skipping calculation at Locus991 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus323 +WARNING: Locus Locus994 has MAF < 0.05. Skipping calculation at Locus994 +WARNING: Locus Locus325 has MAF < 0.05. Skipping calculation at Locus325 +WARNING: Locus Locus997 has MAF < 0.05. Skipping calculation at Locus997 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7560 +WARNING: Locus Locus3378 has MAF < 0.05. Skipping calculation at Locus3378 +WARNING: Locus Locus3379 has MAF < 0.05. Skipping calculation at Locus3379 +WARNING: Locus Locus3382 has MAF < 0.05. Skipping calculation at Locus3382 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus327 +WARNING: Locus Locus1000 has MAF < 0.05. Skipping calculation at Locus1000 +WARNING: Locus Locus1002 has MAF < 0.05. Skipping calculation at Locus1002 +WARNING: Locus Locus3387 has MAF < 0.05. Skipping calculation at Locus3387 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus331 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7561 +WARNING: Locus Locus7562 has MAF < 0.05. Skipping calculation at Locus7562 +WARNING: Locus Locus1008 has MAF < 0.05. Skipping calculation at Locus1008 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus332 +WARNING: Locus Locus5143 has MAF < 0.05. Skipping calculation at Locus5143 +WARNING: Locus Locus5144 has MAF < 0.05. Skipping calculation at Locus5144 +WARNING: Locus Locus5145 has MAF < 0.05. Skipping calculation at Locus5145 +WARNING: Locus Locus5146 has MAF < 0.05. Skipping calculation at Locus5146 +WARNING: Locus Locus5147 has MAF < 0.05. Skipping calculation at Locus5147 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus333 +WARNING: Locus Locus335 has MAF < 0.05. Skipping calculation at Locus335 +WARNING: Locus Locus2552 has MAF < 0.05. Skipping calculation at Locus2552 +WARNING: Locus Locus4239 has MAF < 0.05. Skipping calculation at Locus4239 +WARNING: Locus Locus337 has MAF < 0.05. Skipping calculation at Locus337 +WARNING: Locus Locus338 has MAF < 0.05. Skipping calculation at Locus338 +WARNING: Locus Locus2554 has MAF < 0.05. Skipping calculation at Locus2554 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7563 +WARNING: Locus Locus5153 has MAF < 0.05. Skipping calculation at Locus5153 +WARNING: Locus Locus7564 has MAF < 0.05. Skipping calculation at Locus7564 +WARNING: Locus Locus5154 has MAF < 0.05. Skipping calculation at Locus5154 +WARNING: Locus Locus7565 has MAF < 0.05. Skipping calculation at Locus7565 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus339 +WARNING: Locus Locus1013 has MAF < 0.05. Skipping calculation at Locus1013 +WARNING: Locus Locus5156 has MAF < 0.05. Skipping calculation at Locus5156 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus340 +WARNING: Locus Locus2557 has MAF < 0.05. Skipping calculation at Locus2557 +WARNING: Locus Locus6710 has MAF < 0.05. Skipping calculation at Locus6710 +WARNING: Locus Locus2559 has MAF < 0.05. Skipping calculation at Locus2559 +WARNING: Locus Locus2560 has MAF < 0.05. Skipping calculation at Locus2560 +WARNING: Locus Locus1772 has MAF < 0.05. Skipping calculation at Locus1772 +WARNING: Locus Locus5158 has MAF < 0.05. Skipping calculation at Locus5158 +WARNING: Locus Locus1016 has MAF < 0.05. Skipping calculation at Locus1016 +WARNING: Locus Locus1017 has MAF < 0.05. Skipping calculation at Locus1017 +WARNING: Locus Locus1018 has MAF < 0.05. Skipping calculation at Locus1018 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus344 +WARNING: Locus Locus5160 has MAF < 0.05. Skipping calculation at Locus5160 +WARNING: Locus Locus5161 has MAF < 0.05. Skipping calculation at Locus5161 +WARNING: Locus Locus5162 has MAF < 0.05. Skipping calculation at Locus5162 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus346 +WARNING: Locus Locus1774 has MAF < 0.05. Skipping calculation at Locus1774 +WARNING: Locus Locus1775 has MAF < 0.05. Skipping calculation at Locus1775 +WARNING: Locus Locus6714 has MAF < 0.05. Skipping calculation at Locus6714 +WARNING: Locus Locus5969 has MAF < 0.05. Skipping calculation at Locus5969 +WARNING: Locus Locus5970 has MAF < 0.05. Skipping calculation at Locus5970 +WARNING: Locus Locus5971 has MAF < 0.05. Skipping calculation at Locus5971 +WARNING: Locus Locus5972 has MAF < 0.05. Skipping calculation at Locus5972 +WARNING: Locus Locus5165 has MAF < 0.05. Skipping calculation at Locus5165 +WARNING: Locus Locus5166 has MAF < 0.05. Skipping calculation at Locus5166 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus347 +WARNING: Locus Locus5169 has MAF < 0.05. Skipping calculation at Locus5169 +WARNING: Locus Locus1023 has MAF < 0.05. Skipping calculation at Locus1023 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus350 +WARNING: Locus Locus351 has MAF < 0.05. Skipping calculation at Locus351 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7567 +WARNING: Locus Locus353 has MAF < 0.05. Skipping calculation at Locus353 +WARNING: Locus Locus355 has MAF < 0.05. Skipping calculation at Locus355 +WARNING: Locus Locus5172 has MAF < 0.05. Skipping calculation at Locus5172 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus357 +WARNING: Locus Locus3394 has MAF < 0.05. Skipping calculation at Locus3394 +WARNING: Locus Locus1780 has MAF < 0.05. Skipping calculation at Locus1780 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus1024 +WARNING: Locus Locus1025 has MAF < 0.05. Skipping calculation at Locus1025 +WARNING: Locus Locus1027 has MAF < 0.05. Skipping calculation at Locus1027 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus358 +WARNING: Locus Locus360 has MAF < 0.05. Skipping calculation at Locus360 +WARNING: Locus Locus1784 has MAF < 0.05. Skipping calculation at Locus1784 +WARNING: Locus Locus1031 has MAF < 0.05. Skipping calculation at Locus1031 +WARNING: Locus Locus1032 has MAF < 0.05. Skipping calculation at Locus1032 +WARNING: Locus Locus1034 has MAF < 0.05. Skipping calculation at Locus1034 +WARNING: Locus Locus2566 has MAF < 0.05. Skipping calculation at Locus2566 +WARNING: Locus Locus2567 has MAF < 0.05. Skipping calculation at Locus2567 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7568 +WARNING: Locus Locus365 has MAF < 0.05. Skipping calculation at Locus365 +WARNING: Locus Locus6722 has MAF < 0.05. Skipping calculation at Locus6722 +WARNING: Locus Locus367 has MAF < 0.05. Skipping calculation at Locus367 +WARNING: Locus Locus368 has MAF < 0.05. Skipping calculation at Locus368 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus1035 +WARNING: Locus Locus1036 has MAF < 0.05. Skipping calculation at Locus1036 +WARNING: Locus Locus1037 has MAF < 0.05. Skipping calculation at Locus1037 +WARNING: Locus Locus1038 has MAF < 0.05. Skipping calculation at Locus1038 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus369 +WARNING: Locus Locus373 has MAF < 0.05. Skipping calculation at Locus373 +WARNING: Locus Locus375 has MAF < 0.05. Skipping calculation at Locus375 +WARNING: Locus Locus376 has MAF < 0.05. Skipping calculation at Locus376 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus377 +WARNING: Locus Locus378 has MAF < 0.05. Skipping calculation at Locus378 +WARNING: Locus Locus380 has MAF < 0.05. Skipping calculation at Locus380 +WARNING: Locus Locus381 has MAF < 0.05. Skipping calculation at Locus381 +WARNING: Locus Locus5981 has MAF < 0.05. Skipping calculation at Locus5981 +WARNING: Locus Locus3401 has MAF < 0.05. Skipping calculation at Locus3401 +WARNING: Locus Locus3402 has MAF < 0.05. Skipping calculation at Locus3402 +WARNING: Locus Locus383 has MAF < 0.05. Skipping calculation at Locus383 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7569 +WARNING: Locus Locus7570 has MAF < 0.05. Skipping calculation at Locus7570 +WARNING: Locus Locus2572 has MAF < 0.05. Skipping calculation at Locus2572 +WARNING: Locus Locus2573 has MAF < 0.05. Skipping calculation at Locus2573 +WARNING: Locus Locus2574 has MAF < 0.05. Skipping calculation at Locus2574 +WARNING: Locus Locus2575 has MAF < 0.05. Skipping calculation at Locus2575 +WARNING: Locus Locus2576 has MAF < 0.05. Skipping calculation at Locus2576 +WARNING: Locus Locus386 has MAF < 0.05. Skipping calculation at Locus386 +WARNING: Locus Locus1045 has MAF < 0.05. Skipping calculation at Locus1045 +WARNING: Locus Locus1046 has MAF < 0.05. Skipping calculation at Locus1046 +WARNING: Locus Locus1047 has MAF < 0.05. Skipping calculation at Locus1047 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7571 +WARNING: Locus Locus1791 has MAF < 0.05. Skipping calculation at Locus1791 +WARNING: Locus Locus3413 has MAF < 0.05. Skipping calculation at Locus3413 +WARNING: Locus Locus3414 has MAF < 0.05. Skipping calculation at Locus3414 +WARNING: Locus Locus1050 has MAF < 0.05. Skipping calculation at Locus1050 +WARNING: Locus Locus388 has MAF < 0.05. Skipping calculation at Locus388 +WARNING: Locus Locus5988 has MAF < 0.05. Skipping calculation at Locus5988 +WARNING: Locus Locus1052 has MAF < 0.05. Skipping calculation at Locus1052 +WARNING: Locus Locus1053 has MAF < 0.05. Skipping calculation at Locus1053 +WARNING: Locus Locus1055 has MAF < 0.05. Skipping calculation at Locus1055 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7572 +WARNING: Locus Locus2583 has MAF < 0.05. Skipping calculation at Locus2583 +WARNING: Locus Locus5992 has MAF < 0.05. Skipping calculation at Locus5992 +WARNING: Locus Locus1058 has MAF < 0.05. Skipping calculation at Locus1058 +WARNING: Locus Locus1059 has MAF < 0.05. Skipping calculation at Locus1059 +WARNING: Locus Locus1060 has MAF < 0.05. Skipping calculation at Locus1060 +WARNING: Locus Locus1061 has MAF < 0.05. Skipping calculation at Locus1061 +WARNING: Locus Locus4249 has MAF < 0.05. Skipping calculation at Locus4249 +WARNING: Locus Locus7576 has MAF < 0.05. Skipping calculation at Locus7576 +WARNING: Locus Locus5994 has MAF < 0.05. Skipping calculation at Locus5994 +WARNING: Locus Locus5995 has MAF < 0.05. Skipping calculation at Locus5995 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus390 +WARNING: Locus Locus391 has MAF < 0.05. Skipping calculation at Locus391 +WARNING: Locus Locus2586 has MAF < 0.05. Skipping calculation at Locus2586 +WARNING: Locus Locus4251 has MAF < 0.05. Skipping calculation at Locus4251 +WARNING: Locus Locus4252 has MAF < 0.05. Skipping calculation at Locus4252 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7577 +WARNING: Locus Locus7578 has MAF < 0.05. Skipping calculation at Locus7578 +WARNING: Locus Locus5189 has MAF < 0.05. Skipping calculation at Locus5189 +WARNING: Locus Locus1064 has MAF < 0.05. Skipping calculation at Locus1064 +WARNING: Locus Locus7581 has MAF < 0.05. Skipping calculation at Locus7581 +WARNING: Locus Locus6735 has MAF < 0.05. Skipping calculation at Locus6735 +WARNING: Locus Locus1068 has MAF < 0.05. Skipping calculation at Locus1068 +WARNING: Locus Locus1069 has MAF < 0.05. Skipping calculation at Locus1069 +WARNING: Locus Locus398 has MAF < 0.05. Skipping calculation at Locus398 +WARNING: Locus Locus7587 has MAF < 0.05. Skipping calculation at Locus7587 +WARNING: Locus Locus6739 has MAF < 0.05. Skipping calculation at Locus6739 +WARNING: Locus Locus4257 has MAF < 0.05. Skipping calculation at Locus4257 +WARNING: Locus Locus401 has MAF < 0.05. Skipping calculation at Locus401 +WARNING: Locus Locus402 has MAF < 0.05. Skipping calculation at Locus402 +WARNING: Locus Locus1071 has MAF < 0.05. Skipping calculation at Locus1071 +WARNING: Locus Locus1074 has MAF < 0.05. Skipping calculation at Locus1074 +WARNING: Locus Locus4262 has MAF < 0.05. Skipping calculation at Locus4262 +WARNING: Locus Locus4264 has MAF < 0.05. Skipping calculation at Locus4264 +WARNING: Locus Locus2593 has MAF < 0.05. Skipping calculation at Locus2593 +WARNING: Locus Locus5999 has MAF < 0.05. Skipping calculation at Locus5999 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7592 +WARNING: Locus Locus1798 has MAF < 0.05. Skipping calculation at Locus1798 +WARNING: Locus Locus1799 has MAF < 0.05. Skipping calculation at Locus1799 +WARNING: Locus Locus4267 has MAF < 0.05. Skipping calculation at Locus4267 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus417 +WARNING: Locus Locus4269 has MAF < 0.05. Skipping calculation at Locus4269 +WARNING: Locus Locus4270 has MAF < 0.05. Skipping calculation at Locus4270 +WARNING: Locus Locus421 has MAF < 0.05. Skipping calculation at Locus421 +WARNING: Locus Locus7598 has MAF < 0.05. Skipping calculation at Locus7598 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus422 +WARNING: Locus Locus424 has MAF < 0.05. Skipping calculation at Locus424 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus6743 +WARNING: Locus Locus6745 has MAF < 0.05. Skipping calculation at Locus6745 +WARNING: Locus Locus6746 has MAF < 0.05. Skipping calculation at Locus6746 +WARNING: Locus Locus6004 has MAF < 0.05. Skipping calculation at Locus6004 +WARNING: Locus Locus5197 has MAF < 0.05. Skipping calculation at Locus5197 +WARNING: Locus Locus6006 has MAF < 0.05. Skipping calculation at Locus6006 +WARNING: Locus Locus6749 has MAF < 0.05. Skipping calculation at Locus6749 +WARNING: Locus Locus6750 has MAF < 0.05. Skipping calculation at Locus6750 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus429 +WARNING: Locus Locus430 has MAF < 0.05. Skipping calculation at Locus430 +WARNING: Locus Locus5199 has MAF < 0.05. Skipping calculation at Locus5199 +WARNING: Locus Locus6008 has MAF < 0.05. Skipping calculation at Locus6008 +WARNING: Locus Locus6009 has MAF < 0.05. Skipping calculation at Locus6009 +WARNING: Locus Locus6010 has MAF < 0.05. Skipping calculation at Locus6010 +WARNING: Locus Locus432 has MAF < 0.05. Skipping calculation at Locus432 +WARNING: Locus Locus3423 has MAF < 0.05. Skipping calculation at Locus3423 +WARNING: Locus Locus5202 has MAF < 0.05. Skipping calculation at Locus5202 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus433 +WARNING: Locus Locus435 has MAF < 0.05. Skipping calculation at Locus435 +WARNING: Locus Locus436 has MAF < 0.05. Skipping calculation at Locus436 +WARNING: Locus Locus1803 has MAF < 0.05. Skipping calculation at Locus1803 +WARNING: Locus Locus1079 has MAF < 0.05. Skipping calculation at Locus1079 +WARNING: Locus Locus1080 has MAF < 0.05. Skipping calculation at Locus1080 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7599 +WARNING: Locus Locus1805 has MAF < 0.05. Skipping calculation at Locus1805 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus438 +WARNING: Locus Locus439 has MAF < 0.05. Skipping calculation at Locus439 +WARNING: Locus Locus440 has MAF < 0.05. Skipping calculation at Locus440 +WARNING: Locus Locus6755 has MAF < 0.05. Skipping calculation at Locus6755 +WARNING: Locus Locus6756 has MAF < 0.05. Skipping calculation at Locus6756 +WARNING: Locus Locus6757 has MAF < 0.05. Skipping calculation at Locus6757 +WARNING: Locus Locus6758 has MAF < 0.05. Skipping calculation at Locus6758 +WARNING: Locus Locus6759 has MAF < 0.05. Skipping calculation at Locus6759 +WARNING: Locus Locus1086 has MAF < 0.05. Skipping calculation at Locus1086 +WARNING: Locus Locus1088 has MAF < 0.05. Skipping calculation at Locus1088 +WARNING: Locus Locus1089 has MAF < 0.05. Skipping calculation at Locus1089 +WARNING: Locus Locus1090 has MAF < 0.05. Skipping calculation at Locus1090 +WARNING: Locus Locus1091 has MAF < 0.05. Skipping calculation at Locus1091 +WARNING: Locus Locus442 has MAF < 0.05. Skipping calculation at Locus442 +WARNING: Locus Locus6013 has MAF < 0.05. Skipping calculation at Locus6013 +WARNING: Locus Locus2598 has MAF < 0.05. Skipping calculation at Locus2598 +WARNING: Locus Locus5205 has MAF < 0.05. Skipping calculation at Locus5205 +WARNING: Locus Locus6761 has MAF < 0.05. Skipping calculation at Locus6761 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7601 +WARNING: Locus Locus5207 has MAF < 0.05. Skipping calculation at Locus5207 +WARNING: Locus Locus1807 has MAF < 0.05. Skipping calculation at Locus1807 +WARNING: Locus Locus1808 has MAF < 0.05. Skipping calculation at Locus1808 +WARNING: Locus Locus4276 has MAF < 0.05. Skipping calculation at Locus4276 +WARNING: Locus Locus4277 has MAF < 0.05. Skipping calculation at Locus4277 +WARNING: Locus Locus4278 has MAF < 0.05. Skipping calculation at Locus4278 +WARNING: Locus Locus3427 has MAF < 0.05. Skipping calculation at Locus3427 +WARNING: Locus Locus5211 has MAF < 0.05. Skipping calculation at Locus5211 +WARNING: Locus Locus7604 has MAF < 0.05. Skipping calculation at Locus7604 +WARNING: Locus Locus7605 has MAF < 0.05. Skipping calculation at Locus7605 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus444 +WARNING: Locus Locus445 has MAF < 0.05. Skipping calculation at Locus445 +WARNING: Locus Locus5213 has MAF < 0.05. Skipping calculation at Locus5213 +WARNING: Locus Locus5214 has MAF < 0.05. Skipping calculation at Locus5214 +WARNING: Locus Locus6018 has MAF < 0.05. Skipping calculation at Locus6018 +WARNING: Locus Locus4281 has MAF < 0.05. Skipping calculation at Locus4281 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus1093 +WARNING: Locus Locus5217 has MAF < 0.05. Skipping calculation at Locus5217 +WARNING: Locus Locus5218 has MAF < 0.05. Skipping calculation at Locus5218 +WARNING: Locus Locus5219 has MAF < 0.05. Skipping calculation at Locus5219 +WARNING: Locus Locus6020 has MAF < 0.05. Skipping calculation at Locus6020 +WARNING: Locus Locus6021 has MAF < 0.05. Skipping calculation at Locus6021 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus446 +WARNING: Locus Locus7611 has MAF < 0.05. Skipping calculation at Locus7611 +WARNING: Locus Locus6764 has MAF < 0.05. Skipping calculation at Locus6764 +WARNING: Locus Locus6765 has MAF < 0.05. Skipping calculation at Locus6765 +WARNING: Locus Locus5223 has MAF < 0.05. Skipping calculation at Locus5223 +WARNING: Locus Locus6026 has MAF < 0.05. Skipping calculation at Locus6026 +WARNING: Locus Locus6027 has MAF < 0.05. Skipping calculation at Locus6027 +WARNING: Locus Locus6767 has MAF < 0.05. Skipping calculation at Locus6767 +WARNING: Locus Locus6768 has MAF < 0.05. Skipping calculation at Locus6768 +WARNING: Locus Locus6769 has MAF < 0.05. Skipping calculation at Locus6769 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus448 +WARNING: Locus Locus1096 has MAF < 0.05. Skipping calculation at Locus1096 +WARNING: Locus Locus1098 has MAF < 0.05. Skipping calculation at Locus1098 +WARNING: Locus Locus1099 has MAF < 0.05. Skipping calculation at Locus1099 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus449 +WARNING: Locus Locus7621 has MAF < 0.05. Skipping calculation at Locus7621 +WARNING: Locus Locus5227 has MAF < 0.05. Skipping calculation at Locus5227 +WARNING: Locus Locus6033 has MAF < 0.05. Skipping calculation at Locus6033 +WARNING: Locus Locus6034 has MAF < 0.05. Skipping calculation at Locus6034 +WARNING: Locus Locus6035 has MAF < 0.05. Skipping calculation at Locus6035 +WARNING: Locus Locus6036 has MAF < 0.05. Skipping calculation at Locus6036 +WARNING: Locus Locus6037 has MAF < 0.05. Skipping calculation at Locus6037 +WARNING: Locus Locus6040 has MAF < 0.05. Skipping calculation at Locus6040 +WARNING: Locus Locus6042 has MAF < 0.05. Skipping calculation at Locus6042 +WARNING: Locus Locus6043 has MAF < 0.05. Skipping calculation at Locus6043 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus452 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7622 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus1101 +WARNING: Locus Locus1102 has MAF < 0.05. Skipping calculation at Locus1102 +WARNING: Locus Locus6045 has MAF < 0.05. Skipping calculation at Locus6045 +WARNING: Locus Locus6046 has MAF < 0.05. Skipping calculation at Locus6046 +WARNING: Locus Locus5229 has MAF < 0.05. Skipping calculation at Locus5229 +WARNING: Locus Locus1104 has MAF < 0.05. Skipping calculation at Locus1104 +WARNING: Locus Locus5231 has MAF < 0.05. Skipping calculation at Locus5231 +WARNING: Locus Locus5233 has MAF < 0.05. Skipping calculation at Locus5233 +WARNING: Locus Locus3433 has MAF < 0.05. Skipping calculation at Locus3433 +WARNING: Locus Locus5235 has MAF < 0.05. Skipping calculation at Locus5235 +WARNING: Locus Locus4286 has MAF < 0.05. Skipping calculation at Locus4286 +WARNING: Locus Locus2608 has MAF < 0.05. Skipping calculation at Locus2608 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus456 +WARNING: Locus Locus2611 has MAF < 0.05. Skipping calculation at Locus2611 +WARNING: Locus Locus2612 has MAF < 0.05. Skipping calculation at Locus2612 +WARNING: Locus Locus2613 has MAF < 0.05. Skipping calculation at Locus2613 +WARNING: Locus Locus2616 has MAF < 0.05. Skipping calculation at Locus2616 +WARNING: Locus Locus5238 has MAF < 0.05. Skipping calculation at Locus5238 +WARNING: Locus Locus6781 has MAF < 0.05. Skipping calculation at Locus6781 +WARNING: Locus Locus4289 has MAF < 0.05. Skipping calculation at Locus4289 +WARNING: Locus Locus4290 has MAF < 0.05. Skipping calculation at Locus4290 +WARNING: Locus Locus1818 has MAF < 0.05. Skipping calculation at Locus1818 +WARNING: Locus Locus6783 has MAF < 0.05. Skipping calculation at Locus6783 +WARNING: Locus Locus6784 has MAF < 0.05. Skipping calculation at Locus6784 +WARNING: Locus Locus6785 has MAF < 0.05. Skipping calculation at Locus6785 +WARNING: Locus Locus4293 has MAF < 0.05. Skipping calculation at Locus4293 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7626 +WARNING: Locus Locus6051 has MAF < 0.05. Skipping calculation at Locus6051 +WARNING: Locus Locus6052 has MAF < 0.05. Skipping calculation at Locus6052 +WARNING: Locus Locus7629 has MAF < 0.05. Skipping calculation at Locus7629 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus1112 +WARNING: Locus Locus1113 has MAF < 0.05. Skipping calculation at Locus1113 +WARNING: Locus Locus1114 has MAF < 0.05. Skipping calculation at Locus1114 +WARNING: Locus Locus4295 has MAF < 0.05. Skipping calculation at Locus4295 +WARNING: Locus Locus4296 has MAF < 0.05. Skipping calculation at Locus4296 +WARNING: Locus Locus1116 has MAF < 0.05. Skipping calculation at Locus1116 +WARNING: Locus Locus4298 has MAF < 0.05. Skipping calculation at Locus4298 +WARNING: Locus Locus6054 has MAF < 0.05. Skipping calculation at Locus6054 +WARNING: Locus Locus6055 has MAF < 0.05. Skipping calculation at Locus6055 +WARNING: Locus Locus6056 has MAF < 0.05. Skipping calculation at Locus6056 +WARNING: Locus Locus6057 has MAF < 0.05. Skipping calculation at Locus6057 +WARNING: Locus Locus7637 has MAF < 0.05. Skipping calculation at Locus7637 +WARNING: Locus Locus7638 has MAF < 0.05. Skipping calculation at Locus7638 +WARNING: Locus Locus6787 has MAF < 0.05. Skipping calculation at Locus6787 +WARNING: Locus Locus1120 has MAF < 0.05. Skipping calculation at Locus1120 +WARNING: Locus Locus1121 has MAF < 0.05. Skipping calculation at Locus1121 +WARNING: Locus Locus7640 has MAF < 0.05. Skipping calculation at Locus7640 +WARNING: Locus Locus7641 has MAF < 0.05. Skipping calculation at Locus7641 +WARNING: Locus Locus2624 has MAF < 0.05. Skipping calculation at Locus2624 +WARNING: Locus Locus474 has MAF < 0.05. Skipping calculation at Locus474 +WARNING: Locus Locus6791 has MAF < 0.05. Skipping calculation at Locus6791 +WARNING: Locus Locus6792 has MAF < 0.05. Skipping calculation at Locus6792 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus1122 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7645 +WARNING: Locus Locus3440 has MAF < 0.05. Skipping calculation at Locus3440 +WARNING: Locus Locus4300 has MAF < 0.05. Skipping calculation at Locus4300 +WARNING: Locus Locus4301 has MAF < 0.05. Skipping calculation at Locus4301 +WARNING: Locus Locus4302 has MAF < 0.05. Skipping calculation at Locus4302 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus477 +WARNING: Locus Locus4304 has MAF < 0.05. Skipping calculation at Locus4304 +WARNING: Locus Locus479 has MAF < 0.05. Skipping calculation at Locus479 +WARNING: Locus Locus7647 has MAF < 0.05. Skipping calculation at Locus7647 +WARNING: Locus Locus7648 has MAF < 0.05. Skipping calculation at Locus7648 +WARNING: Locus Locus481 has MAF < 0.05. Skipping calculation at Locus481 +WARNING: Locus Locus482 has MAF < 0.05. Skipping calculation at Locus482 +WARNING: Locus Locus2627 has MAF < 0.05. Skipping calculation at Locus2627 +WARNING: Locus Locus6795 has MAF < 0.05. Skipping calculation at Locus6795 +WARNING: Locus Locus7650 has MAF < 0.05. Skipping calculation at Locus7650 +WARNING: Locus Locus7651 has MAF < 0.05. Skipping calculation at Locus7651 +WARNING: Locus Locus7653 has MAF < 0.05. Skipping calculation at Locus7653 +WARNING: Locus Locus1828 has MAF < 0.05. Skipping calculation at Locus1828 +WARNING: Locus Locus6059 has MAF < 0.05. Skipping calculation at Locus6059 +WARNING: Locus Locus6060 has MAF < 0.05. Skipping calculation at Locus6060 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7654 +WARNING: Locus Locus7655 has MAF < 0.05. Skipping calculation at Locus7655 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus1126 +WARNING: Locus Locus1127 has MAF < 0.05. Skipping calculation at Locus1127 +WARNING: Locus Locus488 has MAF < 0.05. Skipping calculation at Locus488 +WARNING: Locus Locus5245 has MAF < 0.05. Skipping calculation at Locus5245 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus489 +WARNING: Locus Locus1832 has MAF < 0.05. Skipping calculation at Locus1832 +WARNING: Locus Locus1833 has MAF < 0.05. Skipping calculation at Locus1833 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7656 +WARNING: Locus Locus7657 has MAF < 0.05. Skipping calculation at Locus7657 +WARNING: Locus Locus7658 has MAF < 0.05. Skipping calculation at Locus7658 +WARNING: Locus Locus492 has MAF < 0.05. Skipping calculation at Locus492 +WARNING: Locus Locus493 has MAF < 0.05. Skipping calculation at Locus493 +WARNING: Locus Locus494 has MAF < 0.05. Skipping calculation at Locus494 +WARNING: Locus Locus495 has MAF < 0.05. Skipping calculation at Locus495 +WARNING: Locus Locus496 has MAF < 0.05. Skipping calculation at Locus496 +WARNING: Locus Locus497 has MAF < 0.05. Skipping calculation at Locus497 +WARNING: Locus Locus498 has MAF < 0.05. Skipping calculation at Locus498 +WARNING: Locus Locus5247 has MAF < 0.05. Skipping calculation at Locus5247 +WARNING: Locus Locus4308 has MAF < 0.05. Skipping calculation at Locus4308 +WARNING: Locus Locus500 has MAF < 0.05. Skipping calculation at Locus500 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus1129 +WARNING: Locus Locus1130 has MAF < 0.05. Skipping calculation at Locus1130 +WARNING: Locus Locus1835 has MAF < 0.05. Skipping calculation at Locus1835 +WARNING: Locus Locus502 has MAF < 0.05. Skipping calculation at Locus502 +WARNING: Locus Locus1837 has MAF < 0.05. Skipping calculation at Locus1837 +WARNING: Locus Locus1838 has MAF < 0.05. Skipping calculation at Locus1838 +WARNING: Locus Locus1839 has MAF < 0.05. Skipping calculation at Locus1839 +WARNING: Locus Locus5249 has MAF < 0.05. Skipping calculation at Locus5249 +WARNING: Locus Locus5250 has MAF < 0.05. Skipping calculation at Locus5250 +WARNING: Locus Locus7662 has MAF < 0.05. Skipping calculation at Locus7662 +WARNING: Locus Locus7663 has MAF < 0.05. Skipping calculation at Locus7663 +WARNING: Locus Locus6063 has MAF < 0.05. Skipping calculation at Locus6063 +WARNING: Locus Locus6064 has MAF < 0.05. Skipping calculation at Locus6064 +WARNING: Locus Locus6065 has MAF < 0.05. Skipping calculation at Locus6065 +WARNING: Locus Locus6066 has MAF < 0.05. Skipping calculation at Locus6066 +WARNING: Locus Locus6067 has MAF < 0.05. Skipping calculation at Locus6067 +WARNING: Locus Locus2632 has MAF < 0.05. Skipping calculation at Locus2632 +WARNING: Locus Locus2633 has MAF < 0.05. Skipping calculation at Locus2633 +WARNING: Locus Locus2634 has MAF < 0.05. Skipping calculation at Locus2634 +WARNING: Locus Locus2635 has MAF < 0.05. Skipping calculation at Locus2635 +WARNING: Locus Locus1133 has MAF < 0.05. Skipping calculation at Locus1133 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus505 +WARNING: Locus Locus507 has MAF < 0.05. Skipping calculation at Locus507 +WARNING: Locus Locus508 has MAF < 0.05. Skipping calculation at Locus508 +WARNING: Locus Locus509 has MAF < 0.05. Skipping calculation at Locus509 +WARNING: Locus Locus5255 has MAF < 0.05. Skipping calculation at Locus5255 +WARNING: Locus Locus1842 has MAF < 0.05. Skipping calculation at Locus1842 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus512 +WARNING: Locus Locus3447 has MAF < 0.05. Skipping calculation at Locus3447 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus1134 +WARNING: Locus Locus514 has MAF < 0.05. Skipping calculation at Locus514 +WARNING: Locus Locus5257 has MAF < 0.05. Skipping calculation at Locus5257 +WARNING: Locus Locus1136 has MAF < 0.05. Skipping calculation at Locus1136 +WARNING: Locus Locus1137 has MAF < 0.05. Skipping calculation at Locus1137 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7668 +WARNING: Locus Locus2638 has MAF < 0.05. Skipping calculation at Locus2638 +WARNING: Locus Locus1139 has MAF < 0.05. Skipping calculation at Locus1139 +WARNING: Locus Locus6073 has MAF < 0.05. Skipping calculation at Locus6073 +WARNING: Locus Locus519 has MAF < 0.05. Skipping calculation at Locus519 +WARNING: Locus Locus6804 has MAF < 0.05. Skipping calculation at Locus6804 +WARNING: Locus Locus7671 has MAF < 0.05. Skipping calculation at Locus7671 +WARNING: Locus Locus1141 has MAF < 0.05. Skipping calculation at Locus1141 +WARNING: Locus Locus5259 has MAF < 0.05. Skipping calculation at Locus5259 +WARNING: Locus Locus5262 has MAF < 0.05. Skipping calculation at Locus5262 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus520 +WARNING: Locus Locus1143 has MAF < 0.05. Skipping calculation at Locus1143 +WARNING: Locus Locus1144 has MAF < 0.05. Skipping calculation at Locus1144 +WARNING: Locus Locus1145 has MAF < 0.05. Skipping calculation at Locus1145 +WARNING: Locus Locus6077 has MAF < 0.05. Skipping calculation at Locus6077 +WARNING: Locus Locus5266 has MAF < 0.05. Skipping calculation at Locus5266 +WARNING: Locus Locus5267 has MAF < 0.05. Skipping calculation at Locus5267 +WARNING: Locus Locus1147 has MAF < 0.05. Skipping calculation at Locus1147 +WARNING: Locus Locus7674 has MAF < 0.05. Skipping calculation at Locus7674 +WARNING: Locus Locus7675 has MAF < 0.05. Skipping calculation at Locus7675 +WARNING: Locus Locus523 has MAF < 0.05. Skipping calculation at Locus523 +WARNING: Locus Locus524 has MAF < 0.05. Skipping calculation at Locus524 +WARNING: Locus Locus526 has MAF < 0.05. Skipping calculation at Locus526 +WARNING: Locus Locus6807 has MAF < 0.05. Skipping calculation at Locus6807 +WARNING: Locus Locus1847 has MAF < 0.05. Skipping calculation at Locus1847 +WARNING: Locus Locus7678 has MAF < 0.05. Skipping calculation at Locus7678 +WARNING: Locus Locus2642 has MAF < 0.05. Skipping calculation at Locus2642 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus528 +WARNING: Locus Locus529 has MAF < 0.05. Skipping calculation at Locus529 +WARNING: Locus Locus530 has MAF < 0.05. Skipping calculation at Locus530 +WARNING: Locus Locus5271 has MAF < 0.05. Skipping calculation at Locus5271 +WARNING: Locus Locus6081 has MAF < 0.05. Skipping calculation at Locus6081 +WARNING: Locus Locus532 has MAF < 0.05. Skipping calculation at Locus532 +WARNING: Locus Locus533 has MAF < 0.05. Skipping calculation at Locus533 +WARNING: Locus Locus5274 has MAF < 0.05. Skipping calculation at Locus5274 +WARNING: Locus Locus5275 has MAF < 0.05. Skipping calculation at Locus5275 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus1149 +WARNING: Locus Locus1150 has MAF < 0.05. Skipping calculation at Locus1150 +WARNING: Locus Locus1849 has MAF < 0.05. Skipping calculation at Locus1849 +WARNING: Locus Locus1851 has MAF < 0.05. Skipping calculation at Locus1851 +WARNING: Locus Locus1852 has MAF < 0.05. Skipping calculation at Locus1852 +WARNING: Locus Locus5278 has MAF < 0.05. Skipping calculation at Locus5278 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus534 +WARNING: Locus Locus535 has MAF < 0.05. Skipping calculation at Locus535 +WARNING: Locus Locus7682 has MAF < 0.05. Skipping calculation at Locus7682 +WARNING: Locus Locus5280 has MAF < 0.05. Skipping calculation at Locus5280 +WARNING: Locus Locus5281 has MAF < 0.05. Skipping calculation at Locus5281 +WARNING: Locus Locus6810 has MAF < 0.05. Skipping calculation at Locus6810 +WARNING: Locus Locus538 has MAF < 0.05. Skipping calculation at Locus538 +WARNING: Locus Locus539 has MAF < 0.05. Skipping calculation at Locus539 +WARNING: Locus Locus540 has MAF < 0.05. Skipping calculation at Locus540 +WARNING: Locus Locus6812 has MAF < 0.05. Skipping calculation at Locus6812 +WARNING: Locus Locus4312 has MAF < 0.05. Skipping calculation at Locus4312 +WARNING: Locus Locus4313 has MAF < 0.05. Skipping calculation at Locus4313 +WARNING: Locus Locus5284 has MAF < 0.05. Skipping calculation at Locus5284 +WARNING: Locus Locus5285 has MAF < 0.05. Skipping calculation at Locus5285 +WARNING: Locus Locus5286 has MAF < 0.05. Skipping calculation at Locus5286 +WARNING: Locus Locus5287 has MAF < 0.05. Skipping calculation at Locus5287 +WARNING: Locus Locus5288 has MAF < 0.05. Skipping calculation at Locus5288 +WARNING: Locus Locus5289 has MAF < 0.05. Skipping calculation at Locus5289 +WARNING: Locus Locus5290 has MAF < 0.05. Skipping calculation at Locus5290 +WARNING: Locus Locus5291 has MAF < 0.05. Skipping calculation at Locus5291 +WARNING: Locus Locus5292 has MAF < 0.05. Skipping calculation at Locus5292 +WARNING: Locus Locus2648 has MAF < 0.05. Skipping calculation at Locus2648 +WARNING: Locus Locus2649 has MAF < 0.05. Skipping calculation at Locus2649 +WARNING: Locus Locus546 has MAF < 0.05. Skipping calculation at Locus546 +WARNING: Locus Locus6815 has MAF < 0.05. Skipping calculation at Locus6815 +WARNING: Locus Locus4315 has MAF < 0.05. Skipping calculation at Locus4315 +WARNING: Locus Locus1153 has MAF < 0.05. Skipping calculation at Locus1153 +WARNING: Locus Locus552 has MAF < 0.05. Skipping calculation at Locus552 +WARNING: Locus Locus1155 has MAF < 0.05. Skipping calculation at Locus1155 +WARNING: Locus Locus1156 has MAF < 0.05. Skipping calculation at Locus1156 +WARNING: Locus Locus1157 has MAF < 0.05. Skipping calculation at Locus1157 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7683 +WARNING: Locus Locus1855 has MAF < 0.05. Skipping calculation at Locus1855 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus553 +WARNING: Locus Locus7685 has MAF < 0.05. Skipping calculation at Locus7685 +WARNING: Locus Locus5296 has MAF < 0.05. Skipping calculation at Locus5296 +WARNING: Locus Locus5297 has MAF < 0.05. Skipping calculation at Locus5297 +WARNING: Locus Locus5298 has MAF < 0.05. Skipping calculation at Locus5298 +WARNING: Locus Locus5299 has MAF < 0.05. Skipping calculation at Locus5299 +WARNING: Locus Locus5300 has MAF < 0.05. Skipping calculation at Locus5300 +WARNING: Locus Locus5301 has MAF < 0.05. Skipping calculation at Locus5301 +WARNING: Locus Locus5302 has MAF < 0.05. Skipping calculation at Locus5302 +WARNING: Locus Locus1160 has MAF < 0.05. Skipping calculation at Locus1160 +WARNING: Locus Locus555 has MAF < 0.05. Skipping calculation at Locus555 +WARNING: Locus Locus6086 has MAF < 0.05. Skipping calculation at Locus6086 +WARNING: Locus Locus6088 has MAF < 0.05. Skipping calculation at Locus6088 +WARNING: Locus Locus5304 has MAF < 0.05. Skipping calculation at Locus5304 +WARNING: Locus Locus5305 has MAF < 0.05. Skipping calculation at Locus5305 +WARNING: Locus Locus5306 has MAF < 0.05. Skipping calculation at Locus5306 +WARNING: Locus Locus5307 has MAF < 0.05. Skipping calculation at Locus5307 +WARNING: Locus Locus5308 has MAF < 0.05. Skipping calculation at Locus5308 +WARNING: Locus Locus5309 has MAF < 0.05. Skipping calculation at Locus5309 +WARNING: Locus Locus5310 has MAF < 0.05. Skipping calculation at Locus5310 +WARNING: Locus Locus3455 has MAF < 0.05. Skipping calculation at Locus3455 +WARNING: Locus Locus3456 has MAF < 0.05. Skipping calculation at Locus3456 +WARNING: Locus Locus3457 has MAF < 0.05. Skipping calculation at Locus3457 +WARNING: Locus Locus6820 has MAF < 0.05. Skipping calculation at Locus6820 +WARNING: Locus Locus4317 has MAF < 0.05. Skipping calculation at Locus4317 +WARNING: Locus Locus5313 has MAF < 0.05. Skipping calculation at Locus5313 +WARNING: Locus Locus5314 has MAF < 0.05. Skipping calculation at Locus5314 +WARNING: Locus Locus5315 has MAF < 0.05. Skipping calculation at Locus5315 +WARNING: Locus Locus5316 has MAF < 0.05. Skipping calculation at Locus5316 +WARNING: Locus Locus558 has MAF < 0.05. Skipping calculation at Locus558 +WARNING: Locus Locus559 has MAF < 0.05. Skipping calculation at Locus559 +WARNING: Locus Locus560 has MAF < 0.05. Skipping calculation at Locus560 +WARNING: Locus Locus3460 has MAF < 0.05. Skipping calculation at Locus3460 +WARNING: Locus Locus6822 has MAF < 0.05. Skipping calculation at Locus6822 +WARNING: Locus Locus6823 has MAF < 0.05. Skipping calculation at Locus6823 +WARNING: Locus Locus6824 has MAF < 0.05. Skipping calculation at Locus6824 +WARNING: Locus Locus6825 has MAF < 0.05. Skipping calculation at Locus6825 +WARNING: Locus Locus1164 has MAF < 0.05. Skipping calculation at Locus1164 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus561 +WARNING: Locus Locus1166 has MAF < 0.05. Skipping calculation at Locus1166 +WARNING: Locus Locus1167 has MAF < 0.05. Skipping calculation at Locus1167 +WARNING: Locus Locus1168 has MAF < 0.05. Skipping calculation at Locus1168 +WARNING: Locus Locus1169 has MAF < 0.05. Skipping calculation at Locus1169 +WARNING: Locus Locus7690 has MAF < 0.05. Skipping calculation at Locus7690 +WARNING: Locus Locus1171 has MAF < 0.05. Skipping calculation at Locus1171 +WARNING: Locus Locus563 has MAF < 0.05. Skipping calculation at Locus563 +WARNING: Locus Locus1173 has MAF < 0.05. Skipping calculation at Locus1173 +WARNING: Locus Locus1174 has MAF < 0.05. Skipping calculation at Locus1174 +WARNING: Locus Locus1175 has MAF < 0.05. Skipping calculation at Locus1175 +WARNING: Locus Locus7694 has MAF < 0.05. Skipping calculation at Locus7694 +WARNING: Locus Locus5318 has MAF < 0.05. Skipping calculation at Locus5318 +WARNING: Locus Locus5319 has MAF < 0.05. Skipping calculation at Locus5319 +WARNING: Locus Locus5320 has MAF < 0.05. Skipping calculation at Locus5320 +WARNING: Locus Locus566 has MAF < 0.05. Skipping calculation at Locus566 +WARNING: Locus Locus2657 has MAF < 0.05. Skipping calculation at Locus2657 +WARNING: Locus Locus1857 has MAF < 0.05. Skipping calculation at Locus1857 +WARNING: Locus Locus1858 has MAF < 0.05. Skipping calculation at Locus1858 +WARNING: Locus Locus1859 has MAF < 0.05. Skipping calculation at Locus1859 +WARNING: Locus Locus7696 has MAF < 0.05. Skipping calculation at Locus7696 +WARNING: Locus Locus7697 has MAF < 0.05. Skipping calculation at Locus7697 +WARNING: Locus Locus7698 has MAF < 0.05. Skipping calculation at Locus7698 +WARNING: Locus Locus7699 has MAF < 0.05. Skipping calculation at Locus7699 +WARNING: Locus Locus6099 has MAF < 0.05. Skipping calculation at Locus6099 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus567 +WARNING: Locus Locus1177 has MAF < 0.05. Skipping calculation at Locus1177 +WARNING: Locus Locus1179 has MAF < 0.05. Skipping calculation at Locus1179 +WARNING: Locus Locus5322 has MAF < 0.05. Skipping calculation at Locus5322 +WARNING: Locus Locus5323 has MAF < 0.05. Skipping calculation at Locus5323 +WARNING: Locus Locus5325 has MAF < 0.05. Skipping calculation at Locus5325 +WARNING: Locus Locus1181 has MAF < 0.05. Skipping calculation at Locus1181 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7700 +WARNING: Locus Locus6830 has MAF < 0.05. Skipping calculation at Locus6830 +WARNING: Locus Locus1183 has MAF < 0.05. Skipping calculation at Locus1183 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus569 +WARNING: Locus Locus570 has MAF < 0.05. Skipping calculation at Locus570 +WARNING: Locus Locus571 has MAF < 0.05. Skipping calculation at Locus571 +WARNING: Locus Locus572 has MAF < 0.05. Skipping calculation at Locus572 +WARNING: Locus Locus574 has MAF < 0.05. Skipping calculation at Locus574 +WARNING: Locus Locus4321 has MAF < 0.05. Skipping calculation at Locus4321 +WARNING: Locus Locus4322 has MAF < 0.05. Skipping calculation at Locus4322 +WARNING: Locus Locus5327 has MAF < 0.05. Skipping calculation at Locus5327 +WARNING: Locus Locus1862 has MAF < 0.05. Skipping calculation at Locus1862 +WARNING: Locus Locus1863 has MAF < 0.05. Skipping calculation at Locus1863 +WARNING: Locus Locus1864 has MAF < 0.05. Skipping calculation at Locus1864 +WARNING: Locus Locus1187 has MAF < 0.05. Skipping calculation at Locus1187 +WARNING: Locus Locus1188 has MAF < 0.05. Skipping calculation at Locus1188 +WARNING: Locus Locus4324 has MAF < 0.05. Skipping calculation at Locus4324 +WARNING: Locus Locus5329 has MAF < 0.05. Skipping calculation at Locus5329 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7702 +WARNING: Locus Locus4326 has MAF < 0.05. Skipping calculation at Locus4326 +WARNING: Locus Locus4327 has MAF < 0.05. Skipping calculation at Locus4327 +WARNING: Locus Locus6833 has MAF < 0.05. Skipping calculation at Locus6833 +WARNING: Locus Locus5332 has MAF < 0.05. Skipping calculation at Locus5332 +WARNING: Locus Locus5333 has MAF < 0.05. Skipping calculation at Locus5333 +WARNING: Locus Locus5334 has MAF < 0.05. Skipping calculation at Locus5334 +WARNING: Locus Locus5335 has MAF < 0.05. Skipping calculation at Locus5335 +WARNING: Locus Locus577 has MAF < 0.05. Skipping calculation at Locus577 +WARNING: Locus Locus5336 has MAF < 0.05. Skipping calculation at Locus5336 +WARNING: Locus Locus5337 has MAF < 0.05. Skipping calculation at Locus5337 +WARNING: Locus Locus5338 has MAF < 0.05. Skipping calculation at Locus5338 +WARNING: Locus Locus7706 has MAF < 0.05. Skipping calculation at Locus7706 +WARNING: Locus Locus7707 has MAF < 0.05. Skipping calculation at Locus7707 +WARNING: Locus Locus579 has MAF < 0.05. Skipping calculation at Locus579 +WARNING: Locus Locus6835 has MAF < 0.05. Skipping calculation at Locus6835 +WARNING: Locus Locus5341 has MAF < 0.05. Skipping calculation at Locus5341 +WARNING: Locus Locus581 has MAF < 0.05. Skipping calculation at Locus581 +WARNING: Locus Locus582 has MAF < 0.05. Skipping calculation at Locus582 +WARNING: Locus Locus583 has MAF < 0.05. Skipping calculation at Locus583 +WARNING: Locus Locus584 has MAF < 0.05. Skipping calculation at Locus584 +WARNING: Locus Locus585 has MAF < 0.05. Skipping calculation at Locus585 +WARNING: Locus Locus586 has MAF < 0.05. Skipping calculation at Locus586 +WARNING: Locus Locus587 has MAF < 0.05. Skipping calculation at Locus587 +WARNING: Locus Locus588 has MAF < 0.05. Skipping calculation at Locus588 +WARNING: Locus Locus590 has MAF < 0.05. Skipping calculation at Locus590 +WARNING: Locus Locus6837 has MAF < 0.05. Skipping calculation at Locus6837 +WARNING: Locus Locus6838 has MAF < 0.05. Skipping calculation at Locus6838 +WARNING: Locus Locus7710 has MAF < 0.05. Skipping calculation at Locus7710 +WARNING: Locus Locus2665 has MAF < 0.05. Skipping calculation at Locus2665 +WARNING: Locus Locus5345 has MAF < 0.05. Skipping calculation at Locus5345 +WARNING: Locus Locus5346 has MAF < 0.05. Skipping calculation at Locus5346 +WARNING: Locus Locus1194 has MAF < 0.05. Skipping calculation at Locus1194 +WARNING: Locus Locus6840 has MAF < 0.05. Skipping calculation at Locus6840 +WARNING: Locus Locus592 has MAF < 0.05. Skipping calculation at Locus592 +WARNING: Locus Locus7713 has MAF < 0.05. Skipping calculation at Locus7713 +WARNING: Locus Locus6110 has MAF < 0.05. Skipping calculation at Locus6110 +WARNING: Locus Locus594 has MAF < 0.05. Skipping calculation at Locus594 +WARNING: Locus Locus2670 has MAF < 0.05. Skipping calculation at Locus2670 +WARNING: Locus Locus6112 has MAF < 0.05. Skipping calculation at Locus6112 +WARNING: Locus Locus5349 has MAF < 0.05. Skipping calculation at Locus5349 +WARNING: Locus Locus5350 has MAF < 0.05. Skipping calculation at Locus5350 +WARNING: Locus Locus2672 has MAF < 0.05. Skipping calculation at Locus2672 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus595 +WARNING: Locus Locus596 has MAF < 0.05. Skipping calculation at Locus596 +WARNING: Locus Locus597 has MAF < 0.05. Skipping calculation at Locus597 +WARNING: Locus Locus1201 has MAF < 0.05. Skipping calculation at Locus1201 +WARNING: Locus Locus1203 has MAF < 0.05. Skipping calculation at Locus1203 +WARNING: Locus Locus5354 has MAF < 0.05. Skipping calculation at Locus5354 +WARNING: Locus Locus5355 has MAF < 0.05. Skipping calculation at Locus5355 +WARNING: Locus Locus600 has MAF < 0.05. Skipping calculation at Locus600 +WARNING: Locus Locus3470 has MAF < 0.05. Skipping calculation at Locus3470 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7718 +WARNING: Locus Locus7719 has MAF < 0.05. Skipping calculation at Locus7719 +WARNING: Locus Locus5357 has MAF < 0.05. Skipping calculation at Locus5357 +WARNING: Locus Locus603 has MAF < 0.05. Skipping calculation at Locus603 +WARNING: Locus Locus604 has MAF < 0.05. Skipping calculation at Locus604 +WARNING: Locus Locus5361 has MAF < 0.05. Skipping calculation at Locus5361 +WARNING: Locus Locus7723 has MAF < 0.05. Skipping calculation at Locus7723 +WARNING: Locus Locus3472 has MAF < 0.05. Skipping calculation at Locus3472 +WARNING: Locus Locus4331 has MAF < 0.05. Skipping calculation at Locus4331 +WARNING: Locus Locus606 has MAF < 0.05. Skipping calculation at Locus606 +WARNING: Locus Locus6848 has MAF < 0.05. Skipping calculation at Locus6848 +WARNING: Locus Locus6849 has MAF < 0.05. Skipping calculation at Locus6849 +WARNING: Locus Locus7725 has MAF < 0.05. Skipping calculation at Locus7725 +WARNING: Locus Locus7726 has MAF < 0.05. Skipping calculation at Locus7726 +WARNING: Locus Locus2676 has MAF < 0.05. Skipping calculation at Locus2676 +WARNING: Locus Locus608 has MAF < 0.05. Skipping calculation at Locus608 +WARNING: Locus Locus7729 has MAF < 0.05. Skipping calculation at Locus7729 +WARNING: Locus Locus610 has MAF < 0.05. Skipping calculation at Locus610 +WARNING: Locus Locus2681 has MAF < 0.05. Skipping calculation at Locus2681 +WARNING: Locus Locus2682 has MAF < 0.05. Skipping calculation at Locus2682 +WARNING: Locus Locus3474 has MAF < 0.05. Skipping calculation at Locus3474 +WARNING: Locus Locus3475 has MAF < 0.05. Skipping calculation at Locus3475 +WARNING: Locus Locus6122 has MAF < 0.05. Skipping calculation at Locus6122 +WARNING: Locus Locus6123 has MAF < 0.05. Skipping calculation at Locus6123 +WARNING: Locus Locus2685 has MAF < 0.05. Skipping calculation at Locus2685 +WARNING: Locus Locus6125 has MAF < 0.05. Skipping calculation at Locus6125 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus613 +WARNING: Locus Locus614 has MAF < 0.05. Skipping calculation at Locus614 +WARNING: Locus Locus7737 has MAF < 0.05. Skipping calculation at Locus7737 +WARNING: Locus Locus7738 has MAF < 0.05. Skipping calculation at Locus7738 +WARNING: Locus Locus7739 has MAF < 0.05. Skipping calculation at Locus7739 +WARNING: Locus Locus1875 has MAF < 0.05. Skipping calculation at Locus1875 +WARNING: Locus Locus1876 has MAF < 0.05. Skipping calculation at Locus1876 +WARNING: Locus Locus1877 has MAF < 0.05. Skipping calculation at Locus1877 +WARNING: Locus Locus1878 has MAF < 0.05. Skipping calculation at Locus1878 +WARNING: Locus Locus617 has MAF < 0.05. Skipping calculation at Locus617 +WARNING: Locus Locus619 has MAF < 0.05. Skipping calculation at Locus619 +WARNING: Locus Locus620 has MAF < 0.05. Skipping calculation at Locus620 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7740 +WARNING: Locus Locus5368 has MAF < 0.05. Skipping calculation at Locus5368 +WARNING: Locus Locus6860 has MAF < 0.05. Skipping calculation at Locus6860 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus621 +WARNING: Locus Locus622 has MAF < 0.05. Skipping calculation at Locus622 +WARNING: Locus Locus623 has MAF < 0.05. Skipping calculation at Locus623 +WARNING: Locus Locus6862 has MAF < 0.05. Skipping calculation at Locus6862 +WARNING: Locus Locus7744 has MAF < 0.05. Skipping calculation at Locus7744 +WARNING: Locus Locus6864 has MAF < 0.05. Skipping calculation at Locus6864 +WARNING: Locus Locus6865 has MAF < 0.05. Skipping calculation at Locus6865 +WARNING: Locus Locus6866 has MAF < 0.05. Skipping calculation at Locus6866 +WARNING: Locus Locus6867 has MAF < 0.05. Skipping calculation at Locus6867 +WARNING: Locus Locus6868 has MAF < 0.05. Skipping calculation at Locus6868 +WARNING: Locus Locus625 has MAF < 0.05. Skipping calculation at Locus625 +WARNING: Locus Locus3479 has MAF < 0.05. Skipping calculation at Locus3479 +WARNING: Locus Locus7746 has MAF < 0.05. Skipping calculation at Locus7746 +WARNING: Locus Locus627 has MAF < 0.05. Skipping calculation at Locus627 +WARNING: Locus Locus628 has MAF < 0.05. Skipping calculation at Locus628 +WARNING: Locus Locus629 has MAF < 0.05. Skipping calculation at Locus629 +WARNING: Locus Locus4334 has MAF < 0.05. Skipping calculation at Locus4334 +WARNING: Locus Locus4335 has MAF < 0.05. Skipping calculation at Locus4335 +WARNING: Locus Locus4336 has MAF < 0.05. Skipping calculation at Locus4336 +WARNING: Locus Locus7750 has MAF < 0.05. Skipping calculation at Locus7750 +WARNING: Locus Locus7751 has MAF < 0.05. Skipping calculation at Locus7751 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus631 +WARNING: Locus Locus6870 has MAF < 0.05. Skipping calculation at Locus6870 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7752 +WARNING: Locus Locus3485 has MAF < 0.05. Skipping calculation at Locus3485 +WARNING: Locus Locus3486 has MAF < 0.05. Skipping calculation at Locus3486 +WARNING: Locus Locus3487 has MAF < 0.05. Skipping calculation at Locus3487 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus632 +WARNING: Locus Locus634 has MAF < 0.05. Skipping calculation at Locus634 +WARNING: Locus Locus1220 has MAF < 0.05. Skipping calculation at Locus1220 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7753 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus635 +WARNING: Locus Locus7756 has MAF < 0.05. Skipping calculation at Locus7756 +WARNING: Locus Locus3489 has MAF < 0.05. Skipping calculation at Locus3489 +WARNING: Locus Locus7758 has MAF < 0.05. Skipping calculation at Locus7758 +WARNING: Locus Locus1224 has MAF < 0.05. Skipping calculation at Locus1224 +WARNING: Locus Locus6131 has MAF < 0.05. Skipping calculation at Locus6131 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus636 +WARNING: Locus Locus637 has MAF < 0.05. Skipping calculation at Locus637 +WARNING: Locus Locus638 has MAF < 0.05. Skipping calculation at Locus638 +WARNING: Locus Locus7761 has MAF < 0.05. Skipping calculation at Locus7761 +WARNING: Locus Locus7763 has MAF < 0.05. Skipping calculation at Locus7763 +WARNING: Locus Locus4339 has MAF < 0.05. Skipping calculation at Locus4339 +WARNING: Locus Locus4340 has MAF < 0.05. Skipping calculation at Locus4340 +WARNING: Locus Locus6878 has MAF < 0.05. Skipping calculation at Locus6878 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus639 +WARNING: Locus Locus640 has MAF < 0.05. Skipping calculation at Locus640 +WARNING: Locus Locus1229 has MAF < 0.05. Skipping calculation at Locus1229 +WARNING: Locus Locus642 has MAF < 0.05. Skipping calculation at Locus642 +WARNING: Locus Locus3496 has MAF < 0.05. Skipping calculation at Locus3496 +WARNING: Locus Locus7767 has MAF < 0.05. Skipping calculation at Locus7767 +WARNING: Locus Locus645 has MAF < 0.05. Skipping calculation at Locus645 +WARNING: Locus Locus646 has MAF < 0.05. Skipping calculation at Locus646 +WARNING: Locus Locus647 has MAF < 0.05. Skipping calculation at Locus647 +WARNING: Locus Locus3498 has MAF < 0.05. Skipping calculation at Locus3498 +WARNING: Locus Locus7769 has MAF < 0.05. Skipping calculation at Locus7769 +WARNING: Locus Locus649 has MAF < 0.05. Skipping calculation at Locus649 +WARNING: Locus Locus650 has MAF < 0.05. Skipping calculation at Locus650 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus652 +WARNING: Locus Locus7774 has MAF < 0.05. Skipping calculation at Locus7774 +WARNING: Locus Locus7775 has MAF < 0.05. Skipping calculation at Locus7775 +WARNING: Locus Locus7776 has MAF < 0.05. Skipping calculation at Locus7776 +WARNING: Locus Locus7777 has MAF < 0.05. Skipping calculation at Locus7777 +WARNING: Locus Locus7778 has MAF < 0.05. Skipping calculation at Locus7778 +WARNING: Locus Locus7779 has MAF < 0.05. Skipping calculation at Locus7779 +WARNING: Locus Locus7780 has MAF < 0.05. Skipping calculation at Locus7780 +WARNING: Locus Locus7781 has MAF < 0.05. Skipping calculation at Locus7781 +WARNING: Locus Locus3501 has MAF < 0.05. Skipping calculation at Locus3501 +WARNING: Locus Locus7783 has MAF < 0.05. Skipping calculation at Locus7783 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus653 +WARNING: Locus Locus654 has MAF < 0.05. Skipping calculation at Locus654 +WARNING: Locus Locus6135 has MAF < 0.05. Skipping calculation at Locus6135 +WARNING: Locus Locus6136 has MAF < 0.05. Skipping calculation at Locus6136 +WARNING: Locus Locus6138 has MAF < 0.05. Skipping calculation at Locus6138 +WARNING: Locus Locus6139 has MAF < 0.05. Skipping calculation at Locus6139 +WARNING: Locus Locus3508 has MAF < 0.05. Skipping calculation at Locus3508 +WARNING: Locus Locus6884 has MAF < 0.05. Skipping calculation at Locus6884 +WARNING: Locus Locus6885 has MAF < 0.05. Skipping calculation at Locus6885 +WARNING: Locus Locus1237 has MAF < 0.05. Skipping calculation at Locus1237 +WARNING: Locus Locus5373 has MAF < 0.05. Skipping calculation at Locus5373 +WARNING: Locus Locus656 has MAF < 0.05. Skipping calculation at Locus656 +WARNING: Locus Locus657 has MAF < 0.05. Skipping calculation at Locus657 +WARNING: Locus Locus658 has MAF < 0.05. Skipping calculation at Locus658 +WARNING: Locus Locus659 has MAF < 0.05. Skipping calculation at Locus659 +WARNING: Locus Locus660 has MAF < 0.05. Skipping calculation at Locus660 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7786 +WARNING: Locus Locus3511 has MAF < 0.05. Skipping calculation at Locus3511 +WARNING: Locus Locus3512 has MAF < 0.05. Skipping calculation at Locus3512 +WARNING: Locus Locus3513 has MAF < 0.05. Skipping calculation at Locus3513 +WARNING: Locus Locus6141 has MAF < 0.05. Skipping calculation at Locus6141 +WARNING: Locus Locus6142 has MAF < 0.05. Skipping calculation at Locus6142 +WARNING: Locus Locus6143 has MAF < 0.05. Skipping calculation at Locus6143 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus662 +WARNING: Locus Locus663 has MAF < 0.05. Skipping calculation at Locus663 +WARNING: Locus Locus7789 has MAF < 0.05. Skipping calculation at Locus7789 +WARNING: Locus Locus6145 has MAF < 0.05. Skipping calculation at Locus6145 +WARNING: Locus Locus6146 has MAF < 0.05. Skipping calculation at Locus6146 +WARNING: Locus Locus3517 has MAF < 0.05. Skipping calculation at Locus3517 +WARNING: Locus Locus7792 has MAF < 0.05. Skipping calculation at Locus7792 +WARNING: Locus Locus7793 has MAF < 0.05. Skipping calculation at Locus7793 +WARNING: Locus Locus7794 has MAF < 0.05. Skipping calculation at Locus7794 +WARNING: Locus Locus7795 has MAF < 0.05. Skipping calculation at Locus7795 +WARNING: Locus Locus6890 has MAF < 0.05. Skipping calculation at Locus6890 +WARNING: Locus Locus665 has MAF < 0.05. Skipping calculation at Locus665 +WARNING: Locus Locus7798 has MAF < 0.05. Skipping calculation at Locus7798 +WARNING: Locus Locus7799 has MAF < 0.05. Skipping calculation at Locus7799 +WARNING: Locus Locus667 has MAF < 0.05. Skipping calculation at Locus667 +WARNING: Locus Locus3521 has MAF < 0.05. Skipping calculation at Locus3521 +WARNING: Locus Locus1244 has MAF < 0.05. Skipping calculation at Locus1244 +WARNING: Locus Locus7806 has MAF < 0.05. Skipping calculation at Locus7806 +WARNING: Locus Locus7807 has MAF < 0.05. Skipping calculation at Locus7807 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus668 +WARNING: Locus Locus669 has MAF < 0.05. Skipping calculation at Locus669 +WARNING: Locus Locus1246 has MAF < 0.05. Skipping calculation at Locus1246 +WARNING: Locus Locus2700 has MAF < 0.05. Skipping calculation at Locus2700 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7808 +WARNING: Locus Locus4344 has MAF < 0.05. Skipping calculation at Locus4344 +WARNING: Locus Locus4345 has MAF < 0.05. Skipping calculation at Locus4345 +WARNING: Locus Locus4346 has MAF < 0.05. Skipping calculation at Locus4346 +WARNING: Locus Locus4347 has MAF < 0.05. Skipping calculation at Locus4347 +WARNING: Locus Locus4348 has MAF < 0.05. Skipping calculation at Locus4348 +WARNING: Locus Locus4349 has MAF < 0.05. Skipping calculation at Locus4349 +WARNING: Locus Locus4350 has MAF < 0.05. Skipping calculation at Locus4350 +WARNING: Locus Locus4351 has MAF < 0.05. Skipping calculation at Locus4351 +WARNING: Locus Locus4352 has MAF < 0.05. Skipping calculation at Locus4352 +WARNING: Locus Locus4353 has MAF < 0.05. Skipping calculation at Locus4353 +WARNING: Locus Locus4354 has MAF < 0.05. Skipping calculation at Locus4354 +WARNING: Locus Locus4355 has MAF < 0.05. Skipping calculation at Locus4355 +WARNING: Locus Locus4356 has MAF < 0.05. Skipping calculation at Locus4356 +WARNING: Locus Locus3525 has MAF < 0.05. Skipping calculation at Locus3525 +WARNING: Locus Locus1249 has MAF < 0.05. Skipping calculation at Locus1249 +WARNING: Locus Locus1250 has MAF < 0.05. Skipping calculation at Locus1250 +WARNING: Locus Locus1251 has MAF < 0.05. Skipping calculation at Locus1251 +WARNING: Locus Locus1252 has MAF < 0.05. Skipping calculation at Locus1252 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus672 +WARNING: Locus Locus1254 has MAF < 0.05. Skipping calculation at Locus1254 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7811 +WARNING: Locus Locus4359 has MAF < 0.05. Skipping calculation at Locus4359 +WARNING: Locus Locus7813 has MAF < 0.05. Skipping calculation at Locus7813 +WARNING: Locus Locus7814 has MAF < 0.05. Skipping calculation at Locus7814 +WARNING: Locus Locus7816 has MAF < 0.05. Skipping calculation at Locus7816 +WARNING: Locus Locus7817 has MAF < 0.05. Skipping calculation at Locus7817 +WARNING: Locus Locus7818 has MAF < 0.05. Skipping calculation at Locus7818 +WARNING: Locus Locus3527 has MAF < 0.05. Skipping calculation at Locus3527 +WARNING: Locus Locus7822 has MAF < 0.05. Skipping calculation at Locus7822 +WARNING: Locus Locus7824 has MAF < 0.05. Skipping calculation at Locus7824 +WARNING: Locus Locus7825 has MAF < 0.05. Skipping calculation at Locus7825 +WARNING: Locus Locus7826 has MAF < 0.05. Skipping calculation at Locus7826 +WARNING: Locus Locus7827 has MAF < 0.05. Skipping calculation at Locus7827 +WARNING: Locus Locus7828 has MAF < 0.05. Skipping calculation at Locus7828 +WARNING: Locus Locus7829 has MAF < 0.05. Skipping calculation at Locus7829 +WARNING: Locus Locus7830 has MAF < 0.05. Skipping calculation at Locus7830 +WARNING: Locus Locus7832 has MAF < 0.05. Skipping calculation at Locus7832 +WARNING: Locus Locus1886 has MAF < 0.05. Skipping calculation at Locus1886 +WARNING: Locus Locus3529 has MAF < 0.05. Skipping calculation at Locus3529 +WARNING: Locus Locus2705 has MAF < 0.05. Skipping calculation at Locus2705 +WARNING: Locus Locus676 has MAF < 0.05. Skipping calculation at Locus676 +WARNING: Locus Locus677 has MAF < 0.05. Skipping calculation at Locus677 +WARNING: Locus Locus678 has MAF < 0.05. Skipping calculation at Locus678 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7833 +WARNING: Locus Locus7835 has MAF < 0.05. Skipping calculation at Locus7835 +WARNING: Locus Locus7836 has MAF < 0.05. Skipping calculation at Locus7836 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus679 +WARNING: Locus Locus680 has MAF < 0.05. Skipping calculation at Locus680 +WARNING: Locus Locus681 has MAF < 0.05. Skipping calculation at Locus681 +WARNING: Locus Locus682 has MAF < 0.05. Skipping calculation at Locus682 +WARNING: Locus Locus683 has MAF < 0.05. Skipping calculation at Locus683 +WARNING: Locus Locus1893 has MAF < 0.05. Skipping calculation at Locus1893 +WARNING: Locus Locus1894 has MAF < 0.05. Skipping calculation at Locus1894 +WARNING: Locus Locus7838 has MAF < 0.05. Skipping calculation at Locus7838 +WARNING: Locus Locus7839 has MAF < 0.05. Skipping calculation at Locus7839 +WARNING: Locus Locus1896 has MAF < 0.05. Skipping calculation at Locus1896 +WARNING: Locus Locus1897 has MAF < 0.05. Skipping calculation at Locus1897 +WARNING: Locus Locus1262 has MAF < 0.05. Skipping calculation at Locus1262 +WARNING: Locus Locus7843 has MAF < 0.05. Skipping calculation at Locus7843 +WARNING: Locus Locus7844 has MAF < 0.05. Skipping calculation at Locus7844 +WARNING: Locus Locus6901 has MAF < 0.05. Skipping calculation at Locus6901 +WARNING: Locus Locus5379 has MAF < 0.05. Skipping calculation at Locus5379 +WARNING: Locus Locus5380 has MAF < 0.05. Skipping calculation at Locus5380 +WARNING: Locus Locus6903 has MAF < 0.05. Skipping calculation at Locus6903 +WARNING: Locus Locus3535 has MAF < 0.05. Skipping calculation at Locus3535 +WARNING: Locus Locus3536 has MAF < 0.05. Skipping calculation at Locus3536 +WARNING: Locus Locus5382 has MAF < 0.05. Skipping calculation at Locus5382 +WARNING: Locus Locus5383 has MAF < 0.05. Skipping calculation at Locus5383 +WARNING: Locus Locus5384 has MAF < 0.05. Skipping calculation at Locus5384 +WARNING: Locus Locus1265 has MAF < 0.05. Skipping calculation at Locus1265 +WARNING: Locus Locus5386 has MAF < 0.05. Skipping calculation at Locus5386 +WARNING: Locus Locus5387 has MAF < 0.05. Skipping calculation at Locus5387 +WARNING: Locus Locus5388 has MAF < 0.05. Skipping calculation at Locus5388 +WARNING: Locus Locus5389 has MAF < 0.05. Skipping calculation at Locus5389 +WARNING: Locus Locus5391 has MAF < 0.05. Skipping calculation at Locus5391 +WARNING: Locus Locus5392 has MAF < 0.05. Skipping calculation at Locus5392 +WARNING: Locus Locus5393 has MAF < 0.05. Skipping calculation at Locus5393 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7845 +WARNING: Locus Locus7847 has MAF < 0.05. Skipping calculation at Locus7847 +WARNING: Locus Locus7848 has MAF < 0.05. Skipping calculation at Locus7848 +WARNING: Locus Locus7849 has MAF < 0.05. Skipping calculation at Locus7849 +WARNING: Locus Locus7850 has MAF < 0.05. Skipping calculation at Locus7850 +WARNING: Locus Locus687 has MAF < 0.05. Skipping calculation at Locus687 +WARNING: Locus Locus5397 has MAF < 0.05. Skipping calculation at Locus5397 +WARNING: Locus Locus7853 has MAF < 0.05. Skipping calculation at Locus7853 +WARNING: Locus Locus7854 has MAF < 0.05. Skipping calculation at Locus7854 +WARNING: Locus Locus7855 has MAF < 0.05. Skipping calculation at Locus7855 +WARNING: Locus Locus5400 has MAF < 0.05. Skipping calculation at Locus5400 +WARNING: Locus Locus7857 has MAF < 0.05. Skipping calculation at Locus7857 +WARNING: Locus Locus1269 has MAF < 0.05. Skipping calculation at Locus1269 +WARNING: Locus Locus1270 has MAF < 0.05. Skipping calculation at Locus1270 +WARNING: Locus Locus7860 has MAF < 0.05. Skipping calculation at Locus7860 +WARNING: Locus Locus7861 has MAF < 0.05. Skipping calculation at Locus7861 +WARNING: Locus Locus7863 has MAF < 0.05. Skipping calculation at Locus7863 +WARNING: Locus Locus7864 has MAF < 0.05. Skipping calculation at Locus7864 +WARNING: Locus Locus5404 has MAF < 0.05. Skipping calculation at Locus5404 +WARNING: Locus Locus7866 has MAF < 0.05. Skipping calculation at Locus7866 +WARNING: Locus Locus7867 has MAF < 0.05. Skipping calculation at Locus7867 +WARNING: Locus Locus7868 has MAF < 0.05. Skipping calculation at Locus7868 +WARNING: Locus Locus5407 has MAF < 0.05. Skipping calculation at Locus5407 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus692 +WARNING: Locus Locus693 has MAF < 0.05. Skipping calculation at Locus693 +WARNING: Locus Locus3543 has MAF < 0.05. Skipping calculation at Locus3543 +WARNING: Locus Locus7873 has MAF < 0.05. Skipping calculation at Locus7873 +WARNING: Locus Locus7874 has MAF < 0.05. Skipping calculation at Locus7874 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus694 +WARNING: Locus Locus7877 has MAF < 0.05. Skipping calculation at Locus7877 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus6904 +WARNING: Locus Locus6905 has MAF < 0.05. Skipping calculation at Locus6905 +WARNING: Locus Locus6906 has MAF < 0.05. Skipping calculation at Locus6906 +WARNING: Locus Locus4366 has MAF < 0.05. Skipping calculation at Locus4366 +WARNING: Locus Locus7882 has MAF < 0.05. Skipping calculation at Locus7882 +WARNING: Locus Locus1278 has MAF < 0.05. Skipping calculation at Locus1278 +WARNING: Locus Locus7888 has MAF < 0.05. Skipping calculation at Locus7888 +WARNING: Locus Locus2716 has MAF < 0.05. Skipping calculation at Locus2716 +WARNING: Locus Locus2717 has MAF < 0.05. Skipping calculation at Locus2717 +WARNING: Locus Locus2718 has MAF < 0.05. Skipping calculation at Locus2718 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus697 +WARNING: Locus Locus3546 has MAF < 0.05. Skipping calculation at Locus3546 +WARNING: Locus Locus3547 has MAF < 0.05. Skipping calculation at Locus3547 +WARNING: Locus Locus3548 has MAF < 0.05. Skipping calculation at Locus3548 +WARNING: Locus Locus699 has MAF < 0.05. Skipping calculation at Locus699 +WARNING: Locus Locus700 has MAF < 0.05. Skipping calculation at Locus700 +WARNING: Locus Locus7894 has MAF < 0.05. Skipping calculation at Locus7894 +WARNING: Locus Locus7895 has MAF < 0.05. Skipping calculation at Locus7895 +WARNING: Locus Locus5410 has MAF < 0.05. Skipping calculation at Locus5410 +WARNING: Locus Locus5411 has MAF < 0.05. Skipping calculation at Locus5411 +WARNING: Locus Locus5412 has MAF < 0.05. Skipping calculation at Locus5412 +WARNING: Locus Locus1282 has MAF < 0.05. Skipping calculation at Locus1282 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus701 +WARNING: Locus Locus6153 has MAF < 0.05. Skipping calculation at Locus6153 +WARNING: Locus Locus6154 has MAF < 0.05. Skipping calculation at Locus6154 +WARNING: Locus Locus1285 has MAF < 0.05. Skipping calculation at Locus1285 +WARNING: Locus Locus6156 has MAF < 0.05. Skipping calculation at Locus6156 +WARNING: Locus Locus1287 has MAF < 0.05. Skipping calculation at Locus1287 +WARNING: Locus Locus1288 has MAF < 0.05. Skipping calculation at Locus1288 +WARNING: Locus Locus1902 has MAF < 0.05. Skipping calculation at Locus1902 +WARNING: Locus Locus6913 has MAF < 0.05. Skipping calculation at Locus6913 +WARNING: Locus Locus1904 has MAF < 0.05. Skipping calculation at Locus1904 +WARNING: Locus Locus1905 has MAF < 0.05. Skipping calculation at Locus1905 +WARNING: Locus Locus1290 has MAF < 0.05. Skipping calculation at Locus1290 +WARNING: Locus Locus1292 has MAF < 0.05. Skipping calculation at Locus1292 +WARNING: Locus Locus1907 has MAF < 0.05. Skipping calculation at Locus1907 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus703 +WARNING: Locus Locus704 has MAF < 0.05. Skipping calculation at Locus704 +WARNING: Locus Locus6915 has MAF < 0.05. Skipping calculation at Locus6915 +WARNING: Locus Locus6916 has MAF < 0.05. Skipping calculation at Locus6916 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7897 +WARNING: Locus Locus6918 has MAF < 0.05. Skipping calculation at Locus6918 +WARNING: Locus Locus7900 has MAF < 0.05. Skipping calculation at Locus7900 +WARNING: Locus Locus7901 has MAF < 0.05. Skipping calculation at Locus7901 +WARNING: Locus Locus706 has MAF < 0.05. Skipping calculation at Locus706 +WARNING: Locus Locus7904 has MAF < 0.05. Skipping calculation at Locus7904 +WARNING: Locus Locus7905 has MAF < 0.05. Skipping calculation at Locus7905 +WARNING: Locus Locus4379 has MAF < 0.05. Skipping calculation at Locus4379 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus707 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7907 +WARNING: Locus Locus7908 has MAF < 0.05. Skipping calculation at Locus7908 +WARNING: Locus Locus709 has MAF < 0.05. Skipping calculation at Locus709 +WARNING: Locus Locus6922 has MAF < 0.05. Skipping calculation at Locus6922 +WARNING: Locus Locus1912 has MAF < 0.05. Skipping calculation at Locus1912 +WARNING: Locus Locus7911 has MAF < 0.05. Skipping calculation at Locus7911 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus710 +WARNING: Locus Locus711 has MAF < 0.05. Skipping calculation at Locus711 +WARNING: Locus Locus1301 has MAF < 0.05. Skipping calculation at Locus1301 +WARNING: Locus Locus7914 has MAF < 0.05. Skipping calculation at Locus7914 +WARNING: Locus Locus3553 has MAF < 0.05. Skipping calculation at Locus3553 +WARNING: Locus Locus1305 has MAF < 0.05. Skipping calculation at Locus1305 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus712 +WARNING: Locus Locus1307 has MAF < 0.05. Skipping calculation at Locus1307 +WARNING: Locus Locus1308 has MAF < 0.05. Skipping calculation at Locus1308 +WARNING: Locus Locus1309 has MAF < 0.05. Skipping calculation at Locus1309 +WARNING: Locus Locus1916 has MAF < 0.05. Skipping calculation at Locus1916 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus713 +WARNING: Locus Locus714 has MAF < 0.05. Skipping calculation at Locus714 +WARNING: Locus Locus3557 has MAF < 0.05. Skipping calculation at Locus3557 +WARNING: Locus Locus3558 has MAF < 0.05. Skipping calculation at Locus3558 +WARNING: Locus Locus3559 has MAF < 0.05. Skipping calculation at Locus3559 +WARNING: Locus Locus3560 has MAF < 0.05. Skipping calculation at Locus3560 +WARNING: Locus Locus3561 has MAF < 0.05. Skipping calculation at Locus3561 +WARNING: Locus Locus3562 has MAF < 0.05. Skipping calculation at Locus3562 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7916 +WARNING: Locus Locus7917 has MAF < 0.05. Skipping calculation at Locus7917 +WARNING: Locus Locus7918 has MAF < 0.05. Skipping calculation at Locus7918 +WARNING: Locus Locus716 has MAF < 0.05. Skipping calculation at Locus716 +WARNING: Locus Locus4386 has MAF < 0.05. Skipping calculation at Locus4386 +WARNING: Locus Locus1311 has MAF < 0.05. Skipping calculation at Locus1311 +WARNING: Locus Locus1312 has MAF < 0.05. Skipping calculation at Locus1312 +WARNING: Locus Locus1314 has MAF < 0.05. Skipping calculation at Locus1314 +WARNING: Locus Locus1315 has MAF < 0.05. Skipping calculation at Locus1315 +WARNING: Locus Locus4388 has MAF < 0.05. Skipping calculation at Locus4388 +WARNING: Locus Locus6928 has MAF < 0.05. Skipping calculation at Locus6928 +WARNING: Locus Locus6929 has MAF < 0.05. Skipping calculation at Locus6929 +WARNING: Locus Locus6930 has MAF < 0.05. Skipping calculation at Locus6930 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus717 +WARNING: Locus Locus718 has MAF < 0.05. Skipping calculation at Locus718 +WARNING: Locus Locus719 has MAF < 0.05. Skipping calculation at Locus719 +WARNING: Locus Locus720 has MAF < 0.05. Skipping calculation at Locus720 +WARNING: Locus Locus3565 has MAF < 0.05. Skipping calculation at Locus3565 +WARNING: Locus Locus3566 has MAF < 0.05. Skipping calculation at Locus3566 +WARNING: Locus Locus3567 has MAF < 0.05. Skipping calculation at Locus3567 +WARNING: Locus Locus3568 has MAF < 0.05. Skipping calculation at Locus3568 +WARNING: Locus Locus3569 has MAF < 0.05. Skipping calculation at Locus3569 +WARNING: Locus Locus3570 has MAF < 0.05. Skipping calculation at Locus3570 +WARNING: Locus Locus1920 has MAF < 0.05. Skipping calculation at Locus1920 +WARNING: Locus Locus1921 has MAF < 0.05. Skipping calculation at Locus1921 +WARNING: Locus Locus3572 has MAF < 0.05. Skipping calculation at Locus3572 +WARNING: Locus Locus6932 has MAF < 0.05. Skipping calculation at Locus6932 +WARNING: Locus Locus6933 has MAF < 0.05. Skipping calculation at Locus6933 +WARNING: Locus Locus6934 has MAF < 0.05. Skipping calculation at Locus6934 +WARNING: Locus Locus6935 has MAF < 0.05. Skipping calculation at Locus6935 +WARNING: Locus Locus5415 has MAF < 0.05. Skipping calculation at Locus5415 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7919 +WARNING: Locus Locus7920 has MAF < 0.05. Skipping calculation at Locus7920 +WARNING: Locus Locus7921 has MAF < 0.05. Skipping calculation at Locus7921 +WARNING: Locus Locus7922 has MAF < 0.05. Skipping calculation at Locus7922 +WARNING: Locus Locus7924 has MAF < 0.05. Skipping calculation at Locus7924 +WARNING: Locus Locus1318 has MAF < 0.05. Skipping calculation at Locus1318 +WARNING: Locus Locus1319 has MAF < 0.05. Skipping calculation at Locus1319 +WARNING: Locus Locus1320 has MAF < 0.05. Skipping calculation at Locus1320 +WARNING: Locus Locus1321 has MAF < 0.05. Skipping calculation at Locus1321 +WARNING: Locus Locus1322 has MAF < 0.05. Skipping calculation at Locus1322 +WARNING: Locus Locus1323 has MAF < 0.05. Skipping calculation at Locus1323 +WARNING: Locus Locus1324 has MAF < 0.05. Skipping calculation at Locus1324 +WARNING: Locus Locus1325 has MAF < 0.05. Skipping calculation at Locus1325 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus723 +WARNING: Locus Locus724 has MAF < 0.05. Skipping calculation at Locus724 +WARNING: Locus Locus725 has MAF < 0.05. Skipping calculation at Locus725 +WARNING: Locus Locus726 has MAF < 0.05. Skipping calculation at Locus726 +WARNING: Locus Locus5419 has MAF < 0.05. Skipping calculation at Locus5419 +WARNING: Locus Locus5420 has MAF < 0.05. Skipping calculation at Locus5420 +WARNING: Locus Locus5421 has MAF < 0.05. Skipping calculation at Locus5421 +WARNING: Locus Locus2728 has MAF < 0.05. Skipping calculation at Locus2728 +WARNING: Locus Locus6168 has MAF < 0.05. Skipping calculation at Locus6168 +WARNING: Locus Locus6169 has MAF < 0.05. Skipping calculation at Locus6169 +WARNING: Locus Locus730 has MAF < 0.05. Skipping calculation at Locus730 +WARNING: Locus Locus732 has MAF < 0.05. Skipping calculation at Locus732 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7926 +WARNING: Locus Locus735 has MAF < 0.05. Skipping calculation at Locus735 +WARNING: Locus Locus736 has MAF < 0.05. Skipping calculation at Locus736 +WARNING: Locus Locus737 has MAF < 0.05. Skipping calculation at Locus737 +WARNING: Locus Locus7930 has MAF < 0.05. Skipping calculation at Locus7930 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus738 +WARNING: Locus Locus4397 has MAF < 0.05. Skipping calculation at Locus4397 +WARNING: Locus Locus741 has MAF < 0.05. Skipping calculation at Locus741 +WARNING: Locus Locus742 has MAF < 0.05. Skipping calculation at Locus742 +WARNING: Locus Locus743 has MAF < 0.05. Skipping calculation at Locus743 +WARNING: Locus Locus744 has MAF < 0.05. Skipping calculation at Locus744 +WARNING: Locus Locus745 has MAF < 0.05. Skipping calculation at Locus745 +WARNING: Locus Locus746 has MAF < 0.05. Skipping calculation at Locus746 +WARNING: Locus Locus1329 has MAF < 0.05. Skipping calculation at Locus1329 +WARNING: Locus Locus1925 has MAF < 0.05. Skipping calculation at Locus1925 +WARNING: Locus Locus749 has MAF < 0.05. Skipping calculation at Locus749 +WARNING: Locus Locus1927 has MAF < 0.05. Skipping calculation at Locus1927 +WARNING: Locus Locus1332 has MAF < 0.05. Skipping calculation at Locus1332 +WARNING: Locus Locus753 has MAF < 0.05. Skipping calculation at Locus753 +WARNING: Locus Locus4400 has MAF < 0.05. Skipping calculation at Locus4400 +WARNING: Locus Locus755 has MAF < 0.05. Skipping calculation at Locus755 +WARNING: Locus Locus4401 has MAF < 0.05. Skipping calculation at Locus4401 +WARNING: Locus Locus756 has MAF < 0.05. Skipping calculation at Locus756 +WARNING: Locus Locus757 has MAF < 0.05. Skipping calculation at Locus757 +WARNING: Locus Locus758 has MAF < 0.05. Skipping calculation at Locus758 +WARNING: Locus Locus759 has MAF < 0.05. Skipping calculation at Locus759 +WARNING: Locus Locus3575 has MAF < 0.05. Skipping calculation at Locus3575 +WARNING: Locus Locus3576 has MAF < 0.05. Skipping calculation at Locus3576 +WARNING: Locus Locus3577 has MAF < 0.05. Skipping calculation at Locus3577 +WARNING: Locus Locus3578 has MAF < 0.05. Skipping calculation at Locus3578 +WARNING: Locus Locus3580 has MAF < 0.05. Skipping calculation at Locus3580 +WARNING: Locus Locus3581 has MAF < 0.05. Skipping calculation at Locus3581 +WARNING: Locus Locus5423 has MAF < 0.05. Skipping calculation at Locus5423 +WARNING: Locus Locus5424 has MAF < 0.05. Skipping calculation at Locus5424 +WARNING: Locus Locus1335 has MAF < 0.05. Skipping calculation at Locus1335 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7935 +WARNING: Locus Locus7936 has MAF < 0.05. Skipping calculation at Locus7936 +WARNING: Locus Locus6172 has MAF < 0.05. Skipping calculation at Locus6172 +WARNING: Locus Locus6173 has MAF < 0.05. Skipping calculation at Locus6173 +WARNING: Locus Locus765 has MAF < 0.05. Skipping calculation at Locus765 +WARNING: Locus Locus766 has MAF < 0.05. Skipping calculation at Locus766 +WARNING: Locus Locus3585 has MAF < 0.05. Skipping calculation at Locus3585 +WARNING: Locus Locus770 has MAF < 0.05. Skipping calculation at Locus770 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus6939 +WARNING: Locus Locus5426 has MAF < 0.05. Skipping calculation at Locus5426 +WARNING: Locus Locus5427 has MAF < 0.05. Skipping calculation at Locus5427 +WARNING: Locus Locus6941 has MAF < 0.05. Skipping calculation at Locus6941 +WARNING: Locus Locus4407 has MAF < 0.05. Skipping calculation at Locus4407 +WARNING: Locus Locus4408 has MAF < 0.05. Skipping calculation at Locus4408 +WARNING: Locus Locus4409 has MAF < 0.05. Skipping calculation at Locus4409 +WARNING: Locus Locus7941 has MAF < 0.05. Skipping calculation at Locus7941 +WARNING: Locus Locus774 has MAF < 0.05. Skipping calculation at Locus774 +WARNING: Locus Locus3588 has MAF < 0.05. Skipping calculation at Locus3588 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus1337 +WARNING: Locus Locus4413 has MAF < 0.05. Skipping calculation at Locus4413 +WARNING: Locus Locus4414 has MAF < 0.05. Skipping calculation at Locus4414 +WARNING: Locus Locus777 has MAF < 0.05. Skipping calculation at Locus777 +WARNING: Locus Locus778 has MAF < 0.05. Skipping calculation at Locus778 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7942 +WARNING: Locus Locus7943 has MAF < 0.05. Skipping calculation at Locus7943 +WARNING: Locus Locus7944 has MAF < 0.05. Skipping calculation at Locus7944 +WARNING: Locus Locus7945 has MAF < 0.05. Skipping calculation at Locus7945 +WARNING: Locus Locus7946 has MAF < 0.05. Skipping calculation at Locus7946 +WARNING: Locus Locus4416 has MAF < 0.05. Skipping calculation at Locus4416 +WARNING: Locus Locus1340 has MAF < 0.05. Skipping calculation at Locus1340 +WARNING: Locus Locus1341 has MAF < 0.05. Skipping calculation at Locus1341 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7947 +WARNING: Locus Locus1934 has MAF < 0.05. Skipping calculation at Locus1934 +WARNING: Locus Locus6176 has MAF < 0.05. Skipping calculation at Locus6176 +WARNING: Locus Locus1343 has MAF < 0.05. Skipping calculation at Locus1343 +WARNING: Locus Locus781 has MAF < 0.05. Skipping calculation at Locus781 +WARNING: Locus Locus782 has MAF < 0.05. Skipping calculation at Locus782 +WARNING: Locus Locus1345 has MAF < 0.05. Skipping calculation at Locus1345 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7948 +WARNING: Locus Locus7949 has MAF < 0.05. Skipping calculation at Locus7949 +WARNING: Locus Locus2735 has MAF < 0.05. Skipping calculation at Locus2735 +WARNING: Locus Locus784 has MAF < 0.05. Skipping calculation at Locus784 +WARNING: Locus Locus785 has MAF < 0.05. Skipping calculation at Locus785 +WARNING: Locus Locus786 has MAF < 0.05. Skipping calculation at Locus786 +WARNING: Locus Locus6945 has MAF < 0.05. Skipping calculation at Locus6945 +WARNING: Locus Locus6946 has MAF < 0.05. Skipping calculation at Locus6946 +WARNING: Locus Locus6947 has MAF < 0.05. Skipping calculation at Locus6947 +WARNING: Locus Locus3591 has MAF < 0.05. Skipping calculation at Locus3591 +WARNING: Locus Locus1348 has MAF < 0.05. Skipping calculation at Locus1348 +WARNING: Locus Locus1349 has MAF < 0.05. Skipping calculation at Locus1349 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7950 +WARNING: Locus Locus7951 has MAF < 0.05. Skipping calculation at Locus7951 +WARNING: Locus Locus1353 has MAF < 0.05. Skipping calculation at Locus1353 +WARNING: Locus Locus6949 has MAF < 0.05. Skipping calculation at Locus6949 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7952 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7953 +WARNING: Locus Locus791 has MAF < 0.05. Skipping calculation at Locus791 +WARNING: Locus Locus792 has MAF < 0.05. Skipping calculation at Locus792 +WARNING: Locus Locus793 has MAF < 0.05. Skipping calculation at Locus793 +WARNING: Locus Locus795 has MAF < 0.05. Skipping calculation at Locus795 +WARNING: Locus Locus796 has MAF < 0.05. Skipping calculation at Locus796 +WARNING: Locus Locus3594 has MAF < 0.05. Skipping calculation at Locus3594 +WARNING: Locus Locus3595 has MAF < 0.05. Skipping calculation at Locus3595 +WARNING: Locus Locus3596 has MAF < 0.05. Skipping calculation at Locus3596 +WARNING: Locus Locus3597 has MAF < 0.05. Skipping calculation at Locus3597 +WARNING: Locus Locus3599 has MAF < 0.05. Skipping calculation at Locus3599 +WARNING: Locus Locus3600 has MAF < 0.05. Skipping calculation at Locus3600 +WARNING: Locus Locus798 has MAF < 0.05. Skipping calculation at Locus798 +WARNING: Locus Locus4424 has MAF < 0.05. Skipping calculation at Locus4424 +WARNING: Locus Locus1358 has MAF < 0.05. Skipping calculation at Locus1358 +WARNING: Locus Locus800 has MAF < 0.05. Skipping calculation at Locus800 +WARNING: Locus Locus801 has MAF < 0.05. Skipping calculation at Locus801 +WARNING: Locus Locus802 has MAF < 0.05. Skipping calculation at Locus802 +WARNING: Locus Locus804 has MAF < 0.05. Skipping calculation at Locus804 +WARNING: Locus Locus805 has MAF < 0.05. Skipping calculation at Locus805 +WARNING: Locus Locus806 has MAF < 0.05. Skipping calculation at Locus806 +WARNING: Locus Locus5431 has MAF < 0.05. Skipping calculation at Locus5431 +WARNING: Locus Locus811 has MAF < 0.05. Skipping calculation at Locus811 +WARNING: Locus Locus812 has MAF < 0.05. Skipping calculation at Locus812 +WARNING: Locus Locus3604 has MAF < 0.05. Skipping calculation at Locus3604 +WARNING: Locus Locus1936 has MAF < 0.05. Skipping calculation at Locus1936 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7954 +WARNING: Locus Locus7955 has MAF < 0.05. Skipping calculation at Locus7955 +WARNING: Locus Locus7959 has MAF < 0.05. Skipping calculation at Locus7959 +WARNING: Locus Locus7962 has MAF < 0.05. Skipping calculation at Locus7962 +WARNING: Locus Locus7963 has MAF < 0.05. Skipping calculation at Locus7963 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus6952 +WARNING: Locus Locus4434 has MAF < 0.05. Skipping calculation at Locus4434 +WARNING: Locus Locus7967 has MAF < 0.05. Skipping calculation at Locus7967 +WARNING: Locus Locus7968 has MAF < 0.05. Skipping calculation at Locus7968 +WARNING: Locus Locus2743 has MAF < 0.05. Skipping calculation at Locus2743 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7969 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus818 +WARNING: Locus Locus820 has MAF < 0.05. Skipping calculation at Locus820 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7970 +WARNING: Locus Locus4439 has MAF < 0.05. Skipping calculation at Locus4439 +WARNING: Locus Locus4440 has MAF < 0.05. Skipping calculation at Locus4440 +WARNING: Locus Locus6954 has MAF < 0.05. Skipping calculation at Locus6954 +WARNING: Locus Locus6955 has MAF < 0.05. Skipping calculation at Locus6955 +WARNING: Locus Locus2745 has MAF < 0.05. Skipping calculation at Locus2745 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus821 +WARNING: Locus Locus7974 has MAF < 0.05. Skipping calculation at Locus7974 +WARNING: Locus Locus3608 has MAF < 0.05. Skipping calculation at Locus3608 +WARNING: Locus Locus3609 has MAF < 0.05. Skipping calculation at Locus3609 +WARNING: Locus Locus3611 has MAF < 0.05. Skipping calculation at Locus3611 +WARNING: Locus Locus3613 has MAF < 0.05. Skipping calculation at Locus3613 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7975 +WARNING: Locus Locus6182 has MAF < 0.05. Skipping calculation at Locus6182 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus822 +WARNING: Locus Locus823 has MAF < 0.05. Skipping calculation at Locus823 +WARNING: Locus Locus6958 has MAF < 0.05. Skipping calculation at Locus6958 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus824 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7978 +WARNING: Locus Locus6190 has MAF < 0.05. Skipping calculation at Locus6190 +WARNING: Locus Locus7980 has MAF < 0.05. Skipping calculation at Locus7980 +WARNING: Locus Locus7983 has MAF < 0.05. Skipping calculation at Locus7983 +WARNING: Locus Locus7984 has MAF < 0.05. Skipping calculation at Locus7984 +WARNING: Locus Locus7985 has MAF < 0.05. Skipping calculation at Locus7985 +WARNING: Locus Locus7986 has MAF < 0.05. Skipping calculation at Locus7986 +WARNING: Locus Locus7987 has MAF < 0.05. Skipping calculation at Locus7987 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus825 +WARNING: Locus Locus3620 has MAF < 0.05. Skipping calculation at Locus3620 +WARNING: Locus Locus3621 has MAF < 0.05. Skipping calculation at Locus3621 +WARNING: Locus Locus3625 has MAF < 0.05. Skipping calculation at Locus3625 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7989 +WARNING: Locus Locus7990 has MAF < 0.05. Skipping calculation at Locus7990 +WARNING: Locus Locus7991 has MAF < 0.05. Skipping calculation at Locus7991 +WARNING: Locus Locus6963 has MAF < 0.05. Skipping calculation at Locus6963 +WARNING: Locus Locus3628 has MAF < 0.05. Skipping calculation at Locus3628 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus826 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7992 +WARNING: Locus Locus7993 has MAF < 0.05. Skipping calculation at Locus7993 +WARNING: Locus Locus7994 has MAF < 0.05. Skipping calculation at Locus7994 +WARNING: Locus Locus7995 has MAF < 0.05. Skipping calculation at Locus7995 +WARNING: Locus Locus3636 has MAF < 0.05. Skipping calculation at Locus3636 +WARNING: Locus Locus3637 has MAF < 0.05. Skipping calculation at Locus3637 +WARNING: Locus Locus6966 has MAF < 0.05. Skipping calculation at Locus6966 +WARNING: Locus Locus4455 has MAF < 0.05. Skipping calculation at Locus4455 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus827 +WARNING: Locus Locus828 has MAF < 0.05. Skipping calculation at Locus828 +WARNING: Locus Locus829 has MAF < 0.05. Skipping calculation at Locus829 +WARNING: Locus Locus830 has MAF < 0.05. Skipping calculation at Locus830 +WARNING: Locus Locus7997 has MAF < 0.05. Skipping calculation at Locus7997 +WARNING: Locus Locus3639 has MAF < 0.05. Skipping calculation at Locus3639 +WARNING: Locus Locus3640 has MAF < 0.05. Skipping calculation at Locus3640 +WARNING: Locus Locus1375 has MAF < 0.05. Skipping calculation at Locus1375 +WARNING: Locus Locus7999 has MAF < 0.05. Skipping calculation at Locus7999 +WARNING: Locus Locus8001 has MAF < 0.05. Skipping calculation at Locus8001 +WARNING: Locus Locus8002 has MAF < 0.05. Skipping calculation at Locus8002 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus831 +WARNING: Locus Locus8007 has MAF < 0.05. Skipping calculation at Locus8007 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8008 +WARNING: Locus Locus5436 has MAF < 0.05. Skipping calculation at Locus5436 +WARNING: Locus Locus5437 has MAF < 0.05. Skipping calculation at Locus5437 +WARNING: Locus Locus1380 has MAF < 0.05. Skipping calculation at Locus1380 +WARNING: Locus Locus3650 has MAF < 0.05. Skipping calculation at Locus3650 +WARNING: Locus Locus3651 has MAF < 0.05. Skipping calculation at Locus3651 +WARNING: Locus Locus5439 has MAF < 0.05. Skipping calculation at Locus5439 +WARNING: Locus Locus8013 has MAF < 0.05. Skipping calculation at Locus8013 +WARNING: Locus Locus5441 has MAF < 0.05. Skipping calculation at Locus5441 +WARNING: Locus Locus5442 has MAF < 0.05. Skipping calculation at Locus5442 +WARNING: Locus Locus2753 has MAF < 0.05. Skipping calculation at Locus2753 +WARNING: Locus Locus4467 has MAF < 0.05. Skipping calculation at Locus4467 +WARNING: Locus Locus4468 has MAF < 0.05. Skipping calculation at Locus4468 +WARNING: Locus Locus8016 has MAF < 0.05. Skipping calculation at Locus8016 +WARNING: Locus Locus8017 has MAF < 0.05. Skipping calculation at Locus8017 +WARNING: Locus Locus2755 has MAF < 0.05. Skipping calculation at Locus2755 +WARNING: Locus Locus8019 has MAF < 0.05. Skipping calculation at Locus8019 +WARNING: Locus Locus6973 has MAF < 0.05. Skipping calculation at Locus6973 +WARNING: Locus Locus4471 has MAF < 0.05. Skipping calculation at Locus4471 +WARNING: Locus Locus8022 has MAF < 0.05. Skipping calculation at Locus8022 +WARNING: Locus Locus8025 has MAF < 0.05. Skipping calculation at Locus8025 +WARNING: Locus Locus8027 has MAF < 0.05. Skipping calculation at Locus8027 +WARNING: Locus Locus4475 has MAF < 0.05. Skipping calculation at Locus4475 +WARNING: Locus Locus4476 has MAF < 0.05. Skipping calculation at Locus4476 +WARNING: Locus Locus4477 has MAF < 0.05. Skipping calculation at Locus4477 +WARNING: Locus Locus3661 has MAF < 0.05. Skipping calculation at Locus3661 +WARNING: Locus Locus1952 has MAF < 0.05. Skipping calculation at Locus1952 +WARNING: Locus Locus3663 has MAF < 0.05. Skipping calculation at Locus3663 +WARNING: Locus Locus3665 has MAF < 0.05. Skipping calculation at Locus3665 +WARNING: Locus Locus3666 has MAF < 0.05. Skipping calculation at Locus3666 +WARNING: Locus Locus3667 has MAF < 0.05. Skipping calculation at Locus3667 +WARNING: Locus Locus3668 has MAF < 0.05. Skipping calculation at Locus3668 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8028 +WARNING: Locus Locus4482 has MAF < 0.05. Skipping calculation at Locus4482 +WARNING: Locus Locus5445 has MAF < 0.05. Skipping calculation at Locus5445 +WARNING: Locus Locus4484 has MAF < 0.05. Skipping calculation at Locus4484 +WARNING: Locus Locus4485 has MAF < 0.05. Skipping calculation at Locus4485 +WARNING: Locus Locus4486 has MAF < 0.05. Skipping calculation at Locus4486 +WARNING: Locus Locus4487 has MAF < 0.05. Skipping calculation at Locus4487 +WARNING: Locus Locus4489 has MAF < 0.05. Skipping calculation at Locus4489 +WARNING: Locus Locus4490 has MAF < 0.05. Skipping calculation at Locus4490 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8031 +WARNING: Locus Locus2758 has MAF < 0.05. Skipping calculation at Locus2758 +WARNING: Locus Locus2759 has MAF < 0.05. Skipping calculation at Locus2759 +WARNING: Locus Locus6204 has MAF < 0.05. Skipping calculation at Locus6204 +WARNING: Locus Locus1387 has MAF < 0.05. Skipping calculation at Locus1387 +WARNING: Locus Locus8041 has MAF < 0.05. Skipping calculation at Locus8041 +WARNING: Locus Locus8044 has MAF < 0.05. Skipping calculation at Locus8044 +WARNING: Locus Locus8045 has MAF < 0.05. Skipping calculation at Locus8045 +WARNING: Locus Locus8046 has MAF < 0.05. Skipping calculation at Locus8046 +WARNING: Locus Locus3671 has MAF < 0.05. Skipping calculation at Locus3671 +WARNING: Locus Locus3673 has MAF < 0.05. Skipping calculation at Locus3673 +WARNING: Locus Locus3674 has MAF < 0.05. Skipping calculation at Locus3674 +WARNING: Locus Locus3677 has MAF < 0.05. Skipping calculation at Locus3677 +WARNING: Locus Locus4504 has MAF < 0.05. Skipping calculation at Locus4504 +WARNING: Locus Locus4505 has MAF < 0.05. Skipping calculation at Locus4505 +WARNING: Locus Locus6208 has MAF < 0.05. Skipping calculation at Locus6208 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8050 +WARNING: Locus Locus5449 has MAF < 0.05. Skipping calculation at Locus5449 +WARNING: Locus Locus4507 has MAF < 0.05. Skipping calculation at Locus4507 +WARNING: Locus Locus5451 has MAF < 0.05. Skipping calculation at Locus5451 +WARNING: Locus Locus5452 has MAF < 0.05. Skipping calculation at Locus5452 +WARNING: Locus Locus8053 has MAF < 0.05. Skipping calculation at Locus8053 +WARNING: Locus Locus8054 has MAF < 0.05. Skipping calculation at Locus8054 +WARNING: Locus Locus3679 has MAF < 0.05. Skipping calculation at Locus3679 +WARNING: Locus Locus3680 has MAF < 0.05. Skipping calculation at Locus3680 +WARNING: Locus Locus3681 has MAF < 0.05. Skipping calculation at Locus3681 +WARNING: Locus Locus3682 has MAF < 0.05. Skipping calculation at Locus3682 +WARNING: Locus Locus1964 has MAF < 0.05. Skipping calculation at Locus1964 +WARNING: Locus Locus4509 has MAF < 0.05. Skipping calculation at Locus4509 +WARNING: Locus Locus3687 has MAF < 0.05. Skipping calculation at Locus3687 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8057 +WARNING: Locus Locus8058 has MAF < 0.05. Skipping calculation at Locus8058 +WARNING: Locus Locus5459 has MAF < 0.05. Skipping calculation at Locus5459 +WARNING: Locus Locus5460 has MAF < 0.05. Skipping calculation at Locus5460 +WARNING: Locus Locus5461 has MAF < 0.05. Skipping calculation at Locus5461 +WARNING: Locus Locus1394 has MAF < 0.05. Skipping calculation at Locus1394 +WARNING: Locus Locus6993 has MAF < 0.05. Skipping calculation at Locus6993 +WARNING: Locus Locus6212 has MAF < 0.05. Skipping calculation at Locus6212 +WARNING: Locus Locus3694 has MAF < 0.05. Skipping calculation at Locus3694 +WARNING: Locus Locus6214 has MAF < 0.05. Skipping calculation at Locus6214 +WARNING: Locus Locus1396 has MAF < 0.05. Skipping calculation at Locus1396 +WARNING: Locus Locus5464 has MAF < 0.05. Skipping calculation at Locus5464 +WARNING: Locus Locus6216 has MAF < 0.05. Skipping calculation at Locus6216 +WARNING: Locus Locus8065 has MAF < 0.05. Skipping calculation at Locus8065 +WARNING: Locus Locus8066 has MAF < 0.05. Skipping calculation at Locus8066 +WARNING: Locus Locus5467 has MAF < 0.05. Skipping calculation at Locus5467 +WARNING: Locus Locus5468 has MAF < 0.05. Skipping calculation at Locus5468 +WARNING: Locus Locus5469 has MAF < 0.05. Skipping calculation at Locus5469 +WARNING: Locus Locus5470 has MAF < 0.05. Skipping calculation at Locus5470 +WARNING: Locus Locus8073 has MAF < 0.05. Skipping calculation at Locus8073 +WARNING: Locus Locus1975 has MAF < 0.05. Skipping calculation at Locus1975 +WARNING: Locus Locus5472 has MAF < 0.05. Skipping calculation at Locus5472 +WARNING: Locus Locus5473 has MAF < 0.05. Skipping calculation at Locus5473 +WARNING: Locus Locus8077 has MAF < 0.05. Skipping calculation at Locus8077 +WARNING: Locus Locus8079 has MAF < 0.05. Skipping calculation at Locus8079 +WARNING: Locus Locus8080 has MAF < 0.05. Skipping calculation at Locus8080 +WARNING: Locus Locus8082 has MAF < 0.05. Skipping calculation at Locus8082 +WARNING: Locus Locus8083 has MAF < 0.05. Skipping calculation at Locus8083 +WARNING: Locus Locus1978 has MAF < 0.05. Skipping calculation at Locus1978 +WARNING: Locus Locus2768 has MAF < 0.05. Skipping calculation at Locus2768 +WARNING: Locus Locus2769 has MAF < 0.05. Skipping calculation at Locus2769 +WARNING: Locus Locus2770 has MAF < 0.05. Skipping calculation at Locus2770 +WARNING: Locus Locus2771 has MAF < 0.05. Skipping calculation at Locus2771 +WARNING: Locus Locus2772 has MAF < 0.05. Skipping calculation at Locus2772 +WARNING: Locus Locus8085 has MAF < 0.05. Skipping calculation at Locus8085 +WARNING: Locus Locus1402 has MAF < 0.05. Skipping calculation at Locus1402 +WARNING: Locus Locus1403 has MAF < 0.05. Skipping calculation at Locus1403 +WARNING: Locus Locus1404 has MAF < 0.05. Skipping calculation at Locus1404 +WARNING: Locus Locus1405 has MAF < 0.05. Skipping calculation at Locus1405 +WARNING: Locus Locus8087 has MAF < 0.05. Skipping calculation at Locus8087 +WARNING: Locus Locus1407 has MAF < 0.05. Skipping calculation at Locus1407 +WARNING: Locus Locus5475 has MAF < 0.05. Skipping calculation at Locus5475 +WARNING: Locus Locus5476 has MAF < 0.05. Skipping calculation at Locus5476 +WARNING: Locus Locus5477 has MAF < 0.05. Skipping calculation at Locus5477 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus6995 +WARNING: Locus Locus3698 has MAF < 0.05. Skipping calculation at Locus3698 +WARNING: Locus Locus2774 has MAF < 0.05. Skipping calculation at Locus2774 +WARNING: Locus Locus2775 has MAF < 0.05. Skipping calculation at Locus2775 +WARNING: Locus Locus5480 has MAF < 0.05. Skipping calculation at Locus5480 +WARNING: Locus Locus6997 has MAF < 0.05. Skipping calculation at Locus6997 +WARNING: Locus Locus6998 has MAF < 0.05. Skipping calculation at Locus6998 +WARNING: Locus Locus4516 has MAF < 0.05. Skipping calculation at Locus4516 +WARNING: Locus Locus1985 has MAF < 0.05. Skipping calculation at Locus1985 +WARNING: Locus Locus1986 has MAF < 0.05. Skipping calculation at Locus1986 +WARNING: Locus Locus8092 has MAF < 0.05. Skipping calculation at Locus8092 +WARNING: Locus Locus5484 has MAF < 0.05. Skipping calculation at Locus5484 +WARNING: Locus Locus4519 has MAF < 0.05. Skipping calculation at Locus4519 +WARNING: Locus Locus4520 has MAF < 0.05. Skipping calculation at Locus4520 +WARNING: Locus Locus4521 has MAF < 0.05. Skipping calculation at Locus4521 +WARNING: Locus Locus4522 has MAF < 0.05. Skipping calculation at Locus4522 +WARNING: Locus Locus3700 has MAF < 0.05. Skipping calculation at Locus3700 +WARNING: Locus Locus3701 has MAF < 0.05. Skipping calculation at Locus3701 +WARNING: Locus Locus2778 has MAF < 0.05. Skipping calculation at Locus2778 +WARNING: Locus Locus6219 has MAF < 0.05. Skipping calculation at Locus6219 +WARNING: Locus Locus4526 has MAF < 0.05. Skipping calculation at Locus4526 +WARNING: Locus Locus6222 has MAF < 0.05. Skipping calculation at Locus6222 +WARNING: Locus Locus1989 has MAF < 0.05. Skipping calculation at Locus1989 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8093 +WARNING: Locus Locus8094 has MAF < 0.05. Skipping calculation at Locus8094 +WARNING: Locus Locus3708 has MAF < 0.05. Skipping calculation at Locus3708 +WARNING: Locus Locus6227 has MAF < 0.05. Skipping calculation at Locus6227 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8095 +WARNING: Locus Locus3711 has MAF < 0.05. Skipping calculation at Locus3711 +WARNING: Locus Locus6229 has MAF < 0.05. Skipping calculation at Locus6229 +WARNING: Locus Locus6230 has MAF < 0.05. Skipping calculation at Locus6230 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7000 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8096 +WARNING: Locus Locus8097 has MAF < 0.05. Skipping calculation at Locus8097 +WARNING: Locus Locus8098 has MAF < 0.05. Skipping calculation at Locus8098 +WARNING: Locus Locus8099 has MAF < 0.05. Skipping calculation at Locus8099 +WARNING: Locus Locus8100 has MAF < 0.05. Skipping calculation at Locus8100 +WARNING: Locus Locus8101 has MAF < 0.05. Skipping calculation at Locus8101 +WARNING: Locus Locus8102 has MAF < 0.05. Skipping calculation at Locus8102 +WARNING: Locus Locus8104 has MAF < 0.05. Skipping calculation at Locus8104 +WARNING: Locus Locus1415 has MAF < 0.05. Skipping calculation at Locus1415 +WARNING: Locus Locus5495 has MAF < 0.05. Skipping calculation at Locus5495 +WARNING: Locus Locus6233 has MAF < 0.05. Skipping calculation at Locus6233 +WARNING: Locus Locus6234 has MAF < 0.05. Skipping calculation at Locus6234 +WARNING: Locus Locus6235 has MAF < 0.05. Skipping calculation at Locus6235 +WARNING: Locus Locus7003 has MAF < 0.05. Skipping calculation at Locus7003 +WARNING: Locus Locus4529 has MAF < 0.05. Skipping calculation at Locus4529 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8105 +WARNING: Locus Locus1417 has MAF < 0.05. Skipping calculation at Locus1417 +WARNING: Locus Locus4531 has MAF < 0.05. Skipping calculation at Locus4531 +WARNING: Locus Locus8107 has MAF < 0.05. Skipping calculation at Locus8107 +WARNING: Locus Locus4535 has MAF < 0.05. Skipping calculation at Locus4535 +WARNING: Locus Locus4536 has MAF < 0.05. Skipping calculation at Locus4536 +WARNING: Locus Locus4537 has MAF < 0.05. Skipping calculation at Locus4537 +WARNING: Locus Locus8109 has MAF < 0.05. Skipping calculation at Locus8109 +WARNING: Locus Locus5503 has MAF < 0.05. Skipping calculation at Locus5503 +WARNING: Locus Locus5504 has MAF < 0.05. Skipping calculation at Locus5504 +WARNING: Locus Locus8113 has MAF < 0.05. Skipping calculation at Locus8113 +WARNING: Locus Locus3724 has MAF < 0.05. Skipping calculation at Locus3724 +WARNING: Locus Locus4541 has MAF < 0.05. Skipping calculation at Locus4541 +WARNING: Locus Locus4542 has MAF < 0.05. Skipping calculation at Locus4542 +WARNING: Locus Locus4543 has MAF < 0.05. Skipping calculation at Locus4543 +WARNING: Locus Locus8115 has MAF < 0.05. Skipping calculation at Locus8115 +WARNING: Locus Locus5506 has MAF < 0.05. Skipping calculation at Locus5506 +WARNING: Locus Locus5507 has MAF < 0.05. Skipping calculation at Locus5507 +WARNING: Locus Locus8117 has MAF < 0.05. Skipping calculation at Locus8117 +WARNING: Locus Locus3728 has MAF < 0.05. Skipping calculation at Locus3728 +WARNING: Locus Locus3730 has MAF < 0.05. Skipping calculation at Locus3730 +WARNING: Locus Locus8119 has MAF < 0.05. Skipping calculation at Locus8119 +WARNING: Locus Locus8121 has MAF < 0.05. Skipping calculation at Locus8121 +WARNING: Locus Locus1420 has MAF < 0.05. Skipping calculation at Locus1420 +WARNING: Locus Locus6237 has MAF < 0.05. Skipping calculation at Locus6237 +WARNING: Locus Locus6238 has MAF < 0.05. Skipping calculation at Locus6238 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8122 +WARNING: Locus Locus5518 has MAF < 0.05. Skipping calculation at Locus5518 +WARNING: Locus Locus5519 has MAF < 0.05. Skipping calculation at Locus5519 +WARNING: Locus Locus3733 has MAF < 0.05. Skipping calculation at Locus3733 +WARNING: Locus Locus3734 has MAF < 0.05. Skipping calculation at Locus3734 +WARNING: Locus Locus3736 has MAF < 0.05. Skipping calculation at Locus3736 +WARNING: Locus Locus6240 has MAF < 0.05. Skipping calculation at Locus6240 +WARNING: Locus Locus3738 has MAF < 0.05. Skipping calculation at Locus3738 +WARNING: Locus Locus3739 has MAF < 0.05. Skipping calculation at Locus3739 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8123 +WARNING: Locus Locus8124 has MAF < 0.05. Skipping calculation at Locus8124 +WARNING: Locus Locus8125 has MAF < 0.05. Skipping calculation at Locus8125 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7011 +WARNING: Locus Locus6243 has MAF < 0.05. Skipping calculation at Locus6243 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8126 +WARNING: Locus Locus8127 has MAF < 0.05. Skipping calculation at Locus8127 +WARNING: Locus Locus4545 has MAF < 0.05. Skipping calculation at Locus4545 +WARNING: Locus Locus4546 has MAF < 0.05. Skipping calculation at Locus4546 +WARNING: Locus Locus4547 has MAF < 0.05. Skipping calculation at Locus4547 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8128 +WARNING: Locus Locus2795 has MAF < 0.05. Skipping calculation at Locus2795 +WARNING: Locus Locus1428 has MAF < 0.05. Skipping calculation at Locus1428 +WARNING: Locus Locus4549 has MAF < 0.05. Skipping calculation at Locus4549 +WARNING: Locus Locus1431 has MAF < 0.05. Skipping calculation at Locus1431 +WARNING: Locus Locus1432 has MAF < 0.05. Skipping calculation at Locus1432 +WARNING: Locus Locus8131 has MAF < 0.05. Skipping calculation at Locus8131 +WARNING: Locus Locus2797 has MAF < 0.05. Skipping calculation at Locus2797 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8133 +WARNING: Locus Locus1436 has MAF < 0.05. Skipping calculation at Locus1436 +WARNING: Locus Locus1437 has MAF < 0.05. Skipping calculation at Locus1437 +WARNING: Locus Locus1438 has MAF < 0.05. Skipping calculation at Locus1438 +WARNING: Locus Locus1439 has MAF < 0.05. Skipping calculation at Locus1439 +WARNING: Locus Locus3748 has MAF < 0.05. Skipping calculation at Locus3748 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8136 +WARNING: Locus Locus3753 has MAF < 0.05. Skipping calculation at Locus3753 +WARNING: Locus Locus1998 has MAF < 0.05. Skipping calculation at Locus1998 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8137 +WARNING: Locus Locus1442 has MAF < 0.05. Skipping calculation at Locus1442 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8138 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7015 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8139 +WARNING: Locus Locus2807 has MAF < 0.05. Skipping calculation at Locus2807 +WARNING: Locus Locus7017 has MAF < 0.05. Skipping calculation at Locus7017 +WARNING: Locus Locus7018 has MAF < 0.05. Skipping calculation at Locus7018 +WARNING: Locus Locus2809 has MAF < 0.05. Skipping calculation at Locus2809 +WARNING: Locus Locus6248 has MAF < 0.05. Skipping calculation at Locus6248 +WARNING: Locus Locus6250 has MAF < 0.05. Skipping calculation at Locus6250 +WARNING: Locus Locus6251 has MAF < 0.05. Skipping calculation at Locus6251 +WARNING: Locus Locus1448 has MAF < 0.05. Skipping calculation at Locus1448 +WARNING: Locus Locus3757 has MAF < 0.05. Skipping calculation at Locus3757 +WARNING: Locus Locus3758 has MAF < 0.05. Skipping calculation at Locus3758 +WARNING: Locus Locus3759 has MAF < 0.05. Skipping calculation at Locus3759 +WARNING: Locus Locus3760 has MAF < 0.05. Skipping calculation at Locus3760 +WARNING: Locus Locus3761 has MAF < 0.05. Skipping calculation at Locus3761 +WARNING: Locus Locus6253 has MAF < 0.05. Skipping calculation at Locus6253 +WARNING: Locus Locus1450 has MAF < 0.05. Skipping calculation at Locus1450 +WARNING: Locus Locus1451 has MAF < 0.05. Skipping calculation at Locus1451 +WARNING: Locus Locus6255 has MAF < 0.05. Skipping calculation at Locus6255 +WARNING: Locus Locus6256 has MAF < 0.05. Skipping calculation at Locus6256 +WARNING: Locus Locus6257 has MAF < 0.05. Skipping calculation at Locus6257 +WARNING: Locus Locus3764 has MAF < 0.05. Skipping calculation at Locus3764 +WARNING: Locus Locus7021 has MAF < 0.05. Skipping calculation at Locus7021 +WARNING: Locus Locus7022 has MAF < 0.05. Skipping calculation at Locus7022 +WARNING: Locus Locus7023 has MAF < 0.05. Skipping calculation at Locus7023 +WARNING: Locus Locus2813 has MAF < 0.05. Skipping calculation at Locus2813 +WARNING: Locus Locus5527 has MAF < 0.05. Skipping calculation at Locus5527 +WARNING: Locus Locus5528 has MAF < 0.05. Skipping calculation at Locus5528 +WARNING: Locus Locus1454 has MAF < 0.05. Skipping calculation at Locus1454 +WARNING: Locus Locus1455 has MAF < 0.05. Skipping calculation at Locus1455 +WARNING: Locus Locus7025 has MAF < 0.05. Skipping calculation at Locus7025 +WARNING: Locus Locus3768 has MAF < 0.05. Skipping calculation at Locus3768 +WARNING: Locus Locus2816 has MAF < 0.05. Skipping calculation at Locus2816 +WARNING: Locus Locus6262 has MAF < 0.05. Skipping calculation at Locus6262 +WARNING: Locus Locus4559 has MAF < 0.05. Skipping calculation at Locus4559 +WARNING: Locus Locus3771 has MAF < 0.05. Skipping calculation at Locus3771 +WARNING: Locus Locus6265 has MAF < 0.05. Skipping calculation at Locus6265 +WARNING: Locus Locus7028 has MAF < 0.05. Skipping calculation at Locus7028 +WARNING: Locus Locus7031 has MAF < 0.05. Skipping calculation at Locus7031 +WARNING: Locus Locus6270 has MAF < 0.05. Skipping calculation at Locus6270 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8148 +WARNING: Locus Locus3777 has MAF < 0.05. Skipping calculation at Locus3777 +WARNING: Locus Locus5536 has MAF < 0.05. Skipping calculation at Locus5536 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8149 +WARNING: Locus Locus7034 has MAF < 0.05. Skipping calculation at Locus7034 +WARNING: Locus Locus1464 has MAF < 0.05. Skipping calculation at Locus1464 +WARNING: Locus Locus5538 has MAF < 0.05. Skipping calculation at Locus5538 +WARNING: Locus Locus2008 has MAF < 0.05. Skipping calculation at Locus2008 +WARNING: Locus Locus3781 has MAF < 0.05. Skipping calculation at Locus3781 +WARNING: Locus Locus8153 has MAF < 0.05. Skipping calculation at Locus8153 +WARNING: Locus Locus1467 has MAF < 0.05. Skipping calculation at Locus1467 +WARNING: Locus Locus3784 has MAF < 0.05. Skipping calculation at Locus3784 +WARNING: Locus Locus8155 has MAF < 0.05. Skipping calculation at Locus8155 +WARNING: Locus Locus8156 has MAF < 0.05. Skipping calculation at Locus8156 +WARNING: Locus Locus3786 has MAF < 0.05. Skipping calculation at Locus3786 +WARNING: Locus Locus3788 has MAF < 0.05. Skipping calculation at Locus3788 +WARNING: Locus Locus3789 has MAF < 0.05. Skipping calculation at Locus3789 +WARNING: Locus Locus3791 has MAF < 0.05. Skipping calculation at Locus3791 +WARNING: Locus Locus6278 has MAF < 0.05. Skipping calculation at Locus6278 +WARNING: Locus Locus6279 has MAF < 0.05. Skipping calculation at Locus6279 +WARNING: Locus Locus6280 has MAF < 0.05. Skipping calculation at Locus6280 +WARNING: Locus Locus6281 has MAF < 0.05. Skipping calculation at Locus6281 +WARNING: Locus Locus6282 has MAF < 0.05. Skipping calculation at Locus6282 +WARNING: Locus Locus6283 has MAF < 0.05. Skipping calculation at Locus6283 +WARNING: Locus Locus6284 has MAF < 0.05. Skipping calculation at Locus6284 +WARNING: Locus Locus2818 has MAF < 0.05. Skipping calculation at Locus2818 +WARNING: Locus Locus2819 has MAF < 0.05. Skipping calculation at Locus2819 +WARNING: Locus Locus3793 has MAF < 0.05. Skipping calculation at Locus3793 +WARNING: Locus Locus3794 has MAF < 0.05. Skipping calculation at Locus3794 +WARNING: Locus Locus4561 has MAF < 0.05. Skipping calculation at Locus4561 +WARNING: Locus Locus4562 has MAF < 0.05. Skipping calculation at Locus4562 +WARNING: Locus Locus4563 has MAF < 0.05. Skipping calculation at Locus4563 +WARNING: Locus Locus1470 has MAF < 0.05. Skipping calculation at Locus1470 +WARNING: Locus Locus1471 has MAF < 0.05. Skipping calculation at Locus1471 +WARNING: Locus Locus6288 has MAF < 0.05. Skipping calculation at Locus6288 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8159 +WARNING: Locus Locus3800 has MAF < 0.05. Skipping calculation at Locus3800 +WARNING: Locus Locus3801 has MAF < 0.05. Skipping calculation at Locus3801 +WARNING: Locus Locus3802 has MAF < 0.05. Skipping calculation at Locus3802 +WARNING: Locus Locus3804 has MAF < 0.05. Skipping calculation at Locus3804 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8160 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8161 +WARNING: Locus Locus8162 has MAF < 0.05. Skipping calculation at Locus8162 +WARNING: Locus Locus8163 has MAF < 0.05. Skipping calculation at Locus8163 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8164 +WARNING: Locus Locus8165 has MAF < 0.05. Skipping calculation at Locus8165 +WARNING: Locus Locus2823 has MAF < 0.05. Skipping calculation at Locus2823 +WARNING: Locus Locus7040 has MAF < 0.05. Skipping calculation at Locus7040 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8167 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8168 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8169 +WARNING: Locus Locus8170 has MAF < 0.05. Skipping calculation at Locus8170 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8171 +WARNING: Locus Locus8172 has MAF < 0.05. Skipping calculation at Locus8172 +WARNING: Locus Locus8173 has MAF < 0.05. Skipping calculation at Locus8173 +WARNING: Locus Locus8175 has MAF < 0.05. Skipping calculation at Locus8175 +WARNING: Locus Locus8176 has MAF < 0.05. Skipping calculation at Locus8176 +WARNING: Locus Locus4572 has MAF < 0.05. Skipping calculation at Locus4572 +WARNING: Locus Locus4574 has MAF < 0.05. Skipping calculation at Locus4574 +WARNING: Locus Locus7045 has MAF < 0.05. Skipping calculation at Locus7045 +WARNING: Locus Locus4577 has MAF < 0.05. Skipping calculation at Locus4577 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8177 +WARNING: Locus Locus3807 has MAF < 0.05. Skipping calculation at Locus3807 +WARNING: Locus Locus3808 has MAF < 0.05. Skipping calculation at Locus3808 +WARNING: Locus Locus3809 has MAF < 0.05. Skipping calculation at Locus3809 +WARNING: Locus Locus3810 has MAF < 0.05. Skipping calculation at Locus3810 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8179 +WARNING: Locus Locus3812 has MAF < 0.05. Skipping calculation at Locus3812 +WARNING: Locus Locus3813 has MAF < 0.05. Skipping calculation at Locus3813 +WARNING: Locus Locus3814 has MAF < 0.05. Skipping calculation at Locus3814 +WARNING: Locus Locus8181 has MAF < 0.05. Skipping calculation at Locus8181 +WARNING: Locus Locus5547 has MAF < 0.05. Skipping calculation at Locus5547 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8182 +WARNING: Locus Locus1481 has MAF < 0.05. Skipping calculation at Locus1481 +WARNING: Locus Locus1482 has MAF < 0.05. Skipping calculation at Locus1482 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8183 +WARNING: Locus Locus7049 has MAF < 0.05. Skipping calculation at Locus7049 +WARNING: Locus Locus1485 has MAF < 0.05. Skipping calculation at Locus1485 +WARNING: Locus Locus7051 has MAF < 0.05. Skipping calculation at Locus7051 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8185 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8186 +WARNING: Locus Locus3816 has MAF < 0.05. Skipping calculation at Locus3816 +WARNING: Locus Locus3817 has MAF < 0.05. Skipping calculation at Locus3817 +WARNING: Locus Locus3818 has MAF < 0.05. Skipping calculation at Locus3818 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8187 +WARNING: Locus Locus8188 has MAF < 0.05. Skipping calculation at Locus8188 +WARNING: Locus Locus1489 has MAF < 0.05. Skipping calculation at Locus1489 +WARNING: Locus Locus8190 has MAF < 0.05. Skipping calculation at Locus8190 +WARNING: Locus Locus1491 has MAF < 0.05. Skipping calculation at Locus1491 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8192 +WARNING: Locus Locus1493 has MAF < 0.05. Skipping calculation at Locus1493 +WARNING: Locus Locus1497 has MAF < 0.05. Skipping calculation at Locus1497 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8194 +WARNING: Locus Locus3826 has MAF < 0.05. Skipping calculation at Locus3826 +WARNING: Locus Locus1499 has MAF < 0.05. Skipping calculation at Locus1499 +WARNING: Locus Locus1500 has MAF < 0.05. Skipping calculation at Locus1500 +WARNING: Locus Locus1501 has MAF < 0.05. Skipping calculation at Locus1501 +WARNING: Locus Locus3828 has MAF < 0.05. Skipping calculation at Locus3828 +WARNING: Locus Locus3829 has MAF < 0.05. Skipping calculation at Locus3829 +WARNING: Locus Locus3830 has MAF < 0.05. Skipping calculation at Locus3830 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8196 +WARNING: Locus Locus8198 has MAF < 0.05. Skipping calculation at Locus8198 +WARNING: Locus Locus8200 has MAF < 0.05. Skipping calculation at Locus8200 +WARNING: Locus Locus2829 has MAF < 0.05. Skipping calculation at Locus2829 +WARNING: Locus Locus3833 has MAF < 0.05. Skipping calculation at Locus3833 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8202 +WARNING: Locus Locus8203 has MAF < 0.05. Skipping calculation at Locus8203 +WARNING: Locus Locus8204 has MAF < 0.05. Skipping calculation at Locus8204 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8205 +WARNING: Locus Locus3836 has MAF < 0.05. Skipping calculation at Locus3836 +WARNING: Locus Locus3837 has MAF < 0.05. Skipping calculation at Locus3837 +WARNING: Locus Locus5551 has MAF < 0.05. Skipping calculation at Locus5551 +WARNING: Locus Locus5552 has MAF < 0.05. Skipping calculation at Locus5552 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7052 +WARNING: Locus Locus7053 has MAF < 0.05. Skipping calculation at Locus7053 +WARNING: Locus Locus8207 has MAF < 0.05. Skipping calculation at Locus8207 +WARNING: Locus Locus8208 has MAF < 0.05. Skipping calculation at Locus8208 +WARNING: Locus Locus1504 has MAF < 0.05. Skipping calculation at Locus1504 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8209 +WARNING: Locus Locus3839 has MAF < 0.05. Skipping calculation at Locus3839 +WARNING: Locus Locus3840 has MAF < 0.05. Skipping calculation at Locus3840 +WARNING: Locus Locus2832 has MAF < 0.05. Skipping calculation at Locus2832 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8210 +WARNING: Locus Locus8211 has MAF < 0.05. Skipping calculation at Locus8211 +WARNING: Locus Locus3844 has MAF < 0.05. Skipping calculation at Locus3844 +WARNING: Locus Locus3847 has MAF < 0.05. Skipping calculation at Locus3847 +WARNING: Locus Locus3848 has MAF < 0.05. Skipping calculation at Locus3848 +WARNING: Locus Locus3849 has MAF < 0.05. Skipping calculation at Locus3849 +WARNING: Locus Locus3850 has MAF < 0.05. Skipping calculation at Locus3850 +WARNING: Locus Locus7055 has MAF < 0.05. Skipping calculation at Locus7055 +WARNING: Locus Locus3852 has MAF < 0.05. Skipping calculation at Locus3852 +WARNING: Locus Locus4581 has MAF < 0.05. Skipping calculation at Locus4581 +WARNING: Locus Locus4582 has MAF < 0.05. Skipping calculation at Locus4582 +WARNING: Locus Locus3855 has MAF < 0.05. Skipping calculation at Locus3855 +WARNING: Locus Locus3856 has MAF < 0.05. Skipping calculation at Locus3856 +WARNING: Locus Locus4587 has MAF < 0.05. Skipping calculation at Locus4587 +WARNING: Locus Locus4588 has MAF < 0.05. Skipping calculation at Locus4588 +WARNING: Locus Locus3858 has MAF < 0.05. Skipping calculation at Locus3858 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8215 +WARNING: Locus Locus8216 has MAF < 0.05. Skipping calculation at Locus8216 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8217 +WARNING: Locus Locus3864 has MAF < 0.05. Skipping calculation at Locus3864 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8218 +WARNING: Locus Locus8219 has MAF < 0.05. Skipping calculation at Locus8219 +WARNING: Locus Locus1508 has MAF < 0.05. Skipping calculation at Locus1508 +WARNING: Locus Locus2836 has MAF < 0.05. Skipping calculation at Locus2836 +WARNING: Locus Locus8221 has MAF < 0.05. Skipping calculation at Locus8221 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8222 +WARNING: Locus Locus8223 has MAF < 0.05. Skipping calculation at Locus8223 +WARNING: Locus Locus3868 has MAF < 0.05. Skipping calculation at Locus3868 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8224 +WARNING: Locus Locus8225 has MAF < 0.05. Skipping calculation at Locus8225 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7056 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8226 +WARNING: Locus Locus1513 has MAF < 0.05. Skipping calculation at Locus1513 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8227 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8228 +WARNING: Locus Locus8229 has MAF < 0.05. Skipping calculation at Locus8229 +WARNING: Locus Locus5567 has MAF < 0.05. Skipping calculation at Locus5567 +WARNING: Locus Locus8230 has MAF < 0.05. Skipping calculation at Locus8230 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8231 +WARNING: Locus Locus8232 has MAF < 0.05. Skipping calculation at Locus8232 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8233 +WARNING: Locus Locus8234 has MAF < 0.05. Skipping calculation at Locus8234 +WARNING: Locus Locus8235 has MAF < 0.05. Skipping calculation at Locus8235 +WARNING: Locus Locus8236 has MAF < 0.05. Skipping calculation at Locus8236 +WARNING: Locus Locus8237 has MAF < 0.05. Skipping calculation at Locus8237 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8238 +WARNING: Locus Locus8239 has MAF < 0.05. Skipping calculation at Locus8239 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8240 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8241 +WARNING: Locus Locus7060 has MAF < 0.05. Skipping calculation at Locus7060 +WARNING: Locus Locus7061 has MAF < 0.05. Skipping calculation at Locus7061 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8242 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8243 +WARNING: Locus Locus8244 has MAF < 0.05. Skipping calculation at Locus8244 +WARNING: Locus Locus4590 has MAF < 0.05. Skipping calculation at Locus4590 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8245 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8246 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8247 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8248 +WARNING: Locus Locus8249 has MAF < 0.05. Skipping calculation at Locus8249 +WARNING: Locus Locus3877 has MAF < 0.05. Skipping calculation at Locus3877 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8250 +WARNING: Locus Locus8251 has MAF < 0.05. Skipping calculation at Locus8251 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8252 +WARNING: Locus Locus4592 has MAF < 0.05. Skipping calculation at Locus4592 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8253 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8254 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8255 +WARNING: Locus Locus4595 has MAF < 0.05. Skipping calculation at Locus4595 +WARNING: Locus Locus4596 has MAF < 0.05. Skipping calculation at Locus4596 +WARNING: Locus Locus4597 has MAF < 0.05. Skipping calculation at Locus4597 +WARNING: Locus Locus4598 has MAF < 0.05. Skipping calculation at Locus4598 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8256 +WARNING: Locus Locus2022 has MAF < 0.05. Skipping calculation at Locus2022 +WARNING: Locus Locus4600 has MAF < 0.05. Skipping calculation at Locus4600 +WARNING: Locus Locus4601 has MAF < 0.05. Skipping calculation at Locus4601 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8257 +WARNING: Locus Locus4603 has MAF < 0.05. Skipping calculation at Locus4603 +WARNING: Locus Locus6302 has MAF < 0.05. Skipping calculation at Locus6302 +WARNING: Locus Locus1516 has MAF < 0.05. Skipping calculation at Locus1516 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8258 +WARNING: Locus Locus4605 has MAF < 0.05. Skipping calculation at Locus4605 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8259 +WARNING: Locus Locus8260 has MAF < 0.05. Skipping calculation at Locus8260 +WARNING: Locus Locus1518 has MAF < 0.05. Skipping calculation at Locus1518 +WARNING: Locus Locus1519 has MAF < 0.05. Skipping calculation at Locus1519 +WARNING: Locus Locus4607 has MAF < 0.05. Skipping calculation at Locus4607 +WARNING: Locus Locus4608 has MAF < 0.05. Skipping calculation at Locus4608 +WARNING: Locus Locus4609 has MAF < 0.05. Skipping calculation at Locus4609 +WARNING: Locus Locus4610 has MAF < 0.05. Skipping calculation at Locus4610 +WARNING: Locus Locus4611 has MAF < 0.05. Skipping calculation at Locus4611 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8261 +WARNING: Locus Locus4613 has MAF < 0.05. Skipping calculation at Locus4613 +WARNING: Locus Locus3879 has MAF < 0.05. Skipping calculation at Locus3879 +WARNING: Locus Locus2839 has MAF < 0.05. Skipping calculation at Locus2839 +WARNING: Locus Locus7067 has MAF < 0.05. Skipping calculation at Locus7067 +WARNING: Locus Locus7068 has MAF < 0.05. Skipping calculation at Locus7068 +WARNING: Locus Locus3882 has MAF < 0.05. Skipping calculation at Locus3882 +WARNING: Locus Locus3883 has MAF < 0.05. Skipping calculation at Locus3883 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8262 +WARNING: Locus Locus7070 has MAF < 0.05. Skipping calculation at Locus7070 +WARNING: Locus Locus7071 has MAF < 0.05. Skipping calculation at Locus7071 +WARNING: Locus Locus3886 has MAF < 0.05. Skipping calculation at Locus3886 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8263 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8264 +WARNING: Locus Locus5571 has MAF < 0.05. Skipping calculation at Locus5571 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8265 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8266 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8267 +WARNING: Locus Locus8268 has MAF < 0.05. Skipping calculation at Locus8268 +WARNING: Locus Locus3889 has MAF < 0.05. Skipping calculation at Locus3889 +WARNING: Locus Locus3890 has MAF < 0.05. Skipping calculation at Locus3890 +WARNING: Locus Locus3891 has MAF < 0.05. Skipping calculation at Locus3891 +WARNING: Locus Locus3892 has MAF < 0.05. Skipping calculation at Locus3892 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8269 +WARNING: Locus Locus4615 has MAF < 0.05. Skipping calculation at Locus4615 +WARNING: Locus Locus1521 has MAF < 0.05. Skipping calculation at Locus1521 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8270 +WARNING: Locus Locus8271 has MAF < 0.05. Skipping calculation at Locus8271 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8272 +WARNING: Locus Locus4617 has MAF < 0.05. Skipping calculation at Locus4617 +WARNING: Locus Locus6308 has MAF < 0.05. Skipping calculation at Locus6308 +WARNING: Locus Locus6309 has MAF < 0.05. Skipping calculation at Locus6309 +WARNING: Locus Locus6310 has MAF < 0.05. Skipping calculation at Locus6310 +WARNING: Locus Locus6311 has MAF < 0.05. Skipping calculation at Locus6311 +WARNING: Locus Locus4619 has MAF < 0.05. Skipping calculation at Locus4619 +WARNING: Locus Locus4621 has MAF < 0.05. Skipping calculation at Locus4621 +WARNING: Locus Locus4622 has MAF < 0.05. Skipping calculation at Locus4622 +WARNING: Locus Locus5576 has MAF < 0.05. Skipping calculation at Locus5576 +WARNING: Locus Locus3895 has MAF < 0.05. Skipping calculation at Locus3895 +WARNING: Locus Locus3896 has MAF < 0.05. Skipping calculation at Locus3896 +WARNING: Locus Locus3897 has MAF < 0.05. Skipping calculation at Locus3897 +WARNING: Locus Locus3898 has MAF < 0.05. Skipping calculation at Locus3898 +WARNING: Locus Locus3899 has MAF < 0.05. Skipping calculation at Locus3899 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8273 +WARNING: Locus Locus8274 has MAF < 0.05. Skipping calculation at Locus8274 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8275 +WARNING: Locus Locus8276 has MAF < 0.05. Skipping calculation at Locus8276 +WARNING: Locus Locus8277 has MAF < 0.05. Skipping calculation at Locus8277 +WARNING: Locus Locus3901 has MAF < 0.05. Skipping calculation at Locus3901 +WARNING: Locus Locus6315 has MAF < 0.05. Skipping calculation at Locus6315 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7072 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8278 +WARNING: Locus Locus2842 has MAF < 0.05. Skipping calculation at Locus2842 +WARNING: Locus Locus2843 has MAF < 0.05. Skipping calculation at Locus2843 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8279 +WARNING: Locus Locus4627 has MAF < 0.05. Skipping calculation at Locus4627 +WARNING: Locus Locus7074 has MAF < 0.05. Skipping calculation at Locus7074 +WARNING: Locus Locus3905 has MAF < 0.05. Skipping calculation at Locus3905 +WARNING: Locus Locus4634 has MAF < 0.05. Skipping calculation at Locus4634 +WARNING: Locus Locus4636 has MAF < 0.05. Skipping calculation at Locus4636 +WARNING: Locus Locus4637 has MAF < 0.05. Skipping calculation at Locus4637 +WARNING: Locus Locus4638 has MAF < 0.05. Skipping calculation at Locus4638 +WARNING: Locus Locus5582 has MAF < 0.05. Skipping calculation at Locus5582 +WARNING: Locus Locus5583 has MAF < 0.05. Skipping calculation at Locus5583 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8280 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8281 +WARNING: Locus Locus8282 has MAF < 0.05. Skipping calculation at Locus8282 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8283 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8284 +WARNING: Locus Locus7080 has MAF < 0.05. Skipping calculation at Locus7080 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8285 +WARNING: Locus Locus8286 has MAF < 0.05. Skipping calculation at Locus8286 +WARNING: Locus Locus8287 has MAF < 0.05. Skipping calculation at Locus8287 +WARNING: Locus Locus3912 has MAF < 0.05. Skipping calculation at Locus3912 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8288 +WARNING: Locus Locus8289 has MAF < 0.05. Skipping calculation at Locus8289 +WARNING: Locus Locus5586 has MAF < 0.05. Skipping calculation at Locus5586 +WARNING: Locus Locus7084 has MAF < 0.05. Skipping calculation at Locus7084 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8290 +WARNING: Locus Locus8291 has MAF < 0.05. Skipping calculation at Locus8291 +WARNING: Locus Locus8292 has MAF < 0.05. Skipping calculation at Locus8292 +WARNING: Locus Locus6329 has MAF < 0.05. Skipping calculation at Locus6329 +WARNING: Locus Locus6330 has MAF < 0.05. Skipping calculation at Locus6330 +WARNING: Locus Locus6332 has MAF < 0.05. Skipping calculation at Locus6332 +WARNING: Locus Locus6333 has MAF < 0.05. Skipping calculation at Locus6333 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8293 +WARNING: Locus Locus3916 has MAF < 0.05. Skipping calculation at Locus3916 +WARNING: Locus Locus3917 has MAF < 0.05. Skipping calculation at Locus3917 +WARNING: Locus Locus3918 has MAF < 0.05. Skipping calculation at Locus3918 +WARNING: Locus Locus2848 has MAF < 0.05. Skipping calculation at Locus2848 +WARNING: Locus Locus5590 has MAF < 0.05. Skipping calculation at Locus5590 +WARNING: Locus Locus7086 has MAF < 0.05. Skipping calculation at Locus7086 +WARNING: Locus Locus7087 has MAF < 0.05. Skipping calculation at Locus7087 +WARNING: Locus Locus7088 has MAF < 0.05. Skipping calculation at Locus7088 +WARNING: Locus Locus4641 has MAF < 0.05. Skipping calculation at Locus4641 +WARNING: Locus Locus3921 has MAF < 0.05. Skipping calculation at Locus3921 +WARNING: Locus Locus3924 has MAF < 0.05. Skipping calculation at Locus3924 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8294 +WARNING: Locus Locus2036 has MAF < 0.05. Skipping calculation at Locus2036 +WARNING: Locus Locus2037 has MAF < 0.05. Skipping calculation at Locus2037 +WARNING: Locus Locus3926 has MAF < 0.05. Skipping calculation at Locus3926 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8295 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8296 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus1526 +WARNING: Locus Locus6339 has MAF < 0.05. Skipping calculation at Locus6339 +WARNING: Locus Locus6340 has MAF < 0.05. Skipping calculation at Locus6340 +WARNING: Locus Locus5598 has MAF < 0.05. Skipping calculation at Locus5598 +WARNING: Locus Locus5599 has MAF < 0.05. Skipping calculation at Locus5599 +WARNING: Locus Locus5600 has MAF < 0.05. Skipping calculation at Locus5600 +WARNING: Locus Locus5601 has MAF < 0.05. Skipping calculation at Locus5601 +WARNING: Locus Locus5602 has MAF < 0.05. Skipping calculation at Locus5602 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8297 +WARNING: Locus Locus8298 has MAF < 0.05. Skipping calculation at Locus8298 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8299 +WARNING: Locus Locus6343 has MAF < 0.05. Skipping calculation at Locus6343 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8300 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8301 +WARNING: Locus Locus8302 has MAF < 0.05. Skipping calculation at Locus8302 +WARNING: Locus Locus6346 has MAF < 0.05. Skipping calculation at Locus6346 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7090 +WARNING: Locus Locus7091 has MAF < 0.05. Skipping calculation at Locus7091 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8303 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus1527 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8304 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8305 +WARNING: Locus Locus8306 has MAF < 0.05. Skipping calculation at Locus8306 +WARNING: Locus Locus8307 has MAF < 0.05. Skipping calculation at Locus8307 +WARNING: Locus Locus8308 has MAF < 0.05. Skipping calculation at Locus8308 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8309 +WARNING: Locus Locus3933 has MAF < 0.05. Skipping calculation at Locus3933 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8310 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8311 +WARNING: Locus Locus1529 has MAF < 0.05. Skipping calculation at Locus1529 +WARNING: Locus Locus6349 has MAF < 0.05. Skipping calculation at Locus6349 +WARNING: Locus Locus3935 has MAF < 0.05. Skipping calculation at Locus3935 +WARNING: Locus Locus4648 has MAF < 0.05. Skipping calculation at Locus4648 +WARNING: Locus Locus5608 has MAF < 0.05. Skipping calculation at Locus5608 +WARNING: Locus Locus5609 has MAF < 0.05. Skipping calculation at Locus5609 +WARNING: Locus Locus5610 has MAF < 0.05. Skipping calculation at Locus5610 +WARNING: Locus Locus2041 has MAF < 0.05. Skipping calculation at Locus2041 +WARNING: Locus Locus2042 has MAF < 0.05. Skipping calculation at Locus2042 +WARNING: Locus Locus2043 has MAF < 0.05. Skipping calculation at Locus2043 +WARNING: Locus Locus7094 has MAF < 0.05. Skipping calculation at Locus7094 +WARNING: Locus Locus5612 has MAF < 0.05. Skipping calculation at Locus5612 +WARNING: Locus Locus5614 has MAF < 0.05. Skipping calculation at Locus5614 +WARNING: Locus Locus5615 has MAF < 0.05. Skipping calculation at Locus5615 +WARNING: Locus Locus5616 has MAF < 0.05. Skipping calculation at Locus5616 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8312 +WARNING: Locus Locus3939 has MAF < 0.05. Skipping calculation at Locus3939 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8313 +WARNING: Locus Locus5618 has MAF < 0.05. Skipping calculation at Locus5618 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8314 +WARNING: Locus Locus8315 has MAF < 0.05. Skipping calculation at Locus8315 +WARNING: Locus Locus3941 has MAF < 0.05. Skipping calculation at Locus3941 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8316 +WARNING: Locus Locus7098 has MAF < 0.05. Skipping calculation at Locus7098 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8317 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8318 +WARNING: Locus Locus8319 has MAF < 0.05. Skipping calculation at Locus8319 +WARNING: Locus Locus8320 has MAF < 0.05. Skipping calculation at Locus8320 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus8321 +WARNING: Locus Locus8322 has MAF < 0.05. Skipping calculation at Locus8322 +WARNING: Locus Locus8323 has MAF < 0.05. Skipping calculation at Locus8323 +WARNING: Locus Locus2855 has MAF < 0.05. Skipping calculation at Locus2855 +WARNING: Locus Locus6354 has MAF < 0.05. Skipping calculation at Locus6354 +WARNING: Locus Locus4653 has MAF < 0.05. Skipping calculation at Locus4653 +WARNING: Locus Locus1537 has MAF < 0.05. Skipping calculation at Locus1537 +WARNING: Locus Locus5624 has MAF < 0.05. Skipping calculation at Locus5624 +WARNING: Locus Locus7103 has MAF < 0.05. Skipping calculation at Locus7103 +WARNING: Locus Locus5628 has MAF < 0.05. Skipping calculation at Locus5628 +WARNING: Locus Locus6361 has MAF < 0.05. Skipping calculation at Locus6361 +WARNING: Locus Locus5630 has MAF < 0.05. Skipping calculation at Locus5630 +WARNING: Locus Locus5632 has MAF < 0.05. Skipping calculation at Locus5632 +WARNING: Locus Locus5634 has MAF < 0.05. Skipping calculation at Locus5634 +WARNING: Locus Locus5635 has MAF < 0.05. Skipping calculation at Locus5635 +WARNING: Locus Locus3943 has MAF < 0.05. Skipping calculation at Locus3943 +WARNING: Locus Locus1541 has MAF < 0.05. Skipping calculation at Locus1541 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7104 +WARNING: Locus Locus1544 has MAF < 0.05. Skipping calculation at Locus1544 +WARNING: Locus Locus7106 has MAF < 0.05. Skipping calculation at Locus7106 +WARNING: Locus Locus1548 has MAF < 0.05. Skipping calculation at Locus1548 +WARNING: Locus Locus1550 has MAF < 0.05. Skipping calculation at Locus1550 +WARNING: Locus Locus1552 has MAF < 0.05. Skipping calculation at Locus1552 +WARNING: Locus Locus1553 has MAF < 0.05. Skipping calculation at Locus1553 +WARNING: Locus Locus6366 has MAF < 0.05. Skipping calculation at Locus6366 +WARNING: Locus Locus4661 has MAF < 0.05. Skipping calculation at Locus4661 +WARNING: Locus Locus4662 has MAF < 0.05. Skipping calculation at Locus4662 +WARNING: Locus Locus4663 has MAF < 0.05. Skipping calculation at Locus4663 +WARNING: Locus Locus4664 has MAF < 0.05. Skipping calculation at Locus4664 +WARNING: Locus Locus4667 has MAF < 0.05. Skipping calculation at Locus4667 +WARNING: Locus Locus4668 has MAF < 0.05. Skipping calculation at Locus4668 +WARNING: Locus Locus4669 has MAF < 0.05. Skipping calculation at Locus4669 +WARNING: Locus Locus3946 has MAF < 0.05. Skipping calculation at Locus3946 +WARNING: Locus Locus5651 has MAF < 0.05. Skipping calculation at Locus5651 +WARNING: Locus Locus1557 has MAF < 0.05. Skipping calculation at Locus1557 +WARNING: Locus Locus1559 has MAF < 0.05. Skipping calculation at Locus1559 +WARNING: Locus Locus7114 has MAF < 0.05. Skipping calculation at Locus7114 +WARNING: Locus Locus7115 has MAF < 0.05. Skipping calculation at Locus7115 +WARNING: Locus Locus7116 has MAF < 0.05. Skipping calculation at Locus7116 +WARNING: Locus Locus7117 has MAF < 0.05. Skipping calculation at Locus7117 +WARNING: Locus Locus2063 has MAF < 0.05. Skipping calculation at Locus2063 +WARNING: Locus Locus4672 has MAF < 0.05. Skipping calculation at Locus4672 +WARNING: Locus Locus2065 has MAF < 0.05. Skipping calculation at Locus2065 +WARNING: Locus Locus6369 has MAF < 0.05. Skipping calculation at Locus6369 +WARNING: Locus Locus6370 has MAF < 0.05. Skipping calculation at Locus6370 +WARNING: Locus Locus7119 has MAF < 0.05. Skipping calculation at Locus7119 +WARNING: Locus Locus7120 has MAF < 0.05. Skipping calculation at Locus7120 +WARNING: Locus Locus7121 has MAF < 0.05. Skipping calculation at Locus7121 +WARNING: Locus Locus5659 has MAF < 0.05. Skipping calculation at Locus5659 +WARNING: Locus Locus4677 has MAF < 0.05. Skipping calculation at Locus4677 +WARNING: Locus Locus2860 has MAF < 0.05. Skipping calculation at Locus2860 +WARNING: Locus Locus2861 has MAF < 0.05. Skipping calculation at Locus2861 +WARNING: Locus Locus2863 has MAF < 0.05. Skipping calculation at Locus2863 +WARNING: Locus Locus5666 has MAF < 0.05. Skipping calculation at Locus5666 +WARNING: Locus Locus7123 has MAF < 0.05. Skipping calculation at Locus7123 +WARNING: Locus Locus3949 has MAF < 0.05. Skipping calculation at Locus3949 +WARNING: Locus Locus2070 has MAF < 0.05. Skipping calculation at Locus2070 +WARNING: Locus Locus3951 has MAF < 0.05. Skipping calculation at Locus3951 +WARNING: Locus Locus3952 has MAF < 0.05. Skipping calculation at Locus3952 +WARNING: Locus Locus1564 has MAF < 0.05. Skipping calculation at Locus1564 +WARNING: Locus Locus1565 has MAF < 0.05. Skipping calculation at Locus1565 +WARNING: Locus Locus1566 has MAF < 0.05. Skipping calculation at Locus1566 +WARNING: Locus Locus2073 has MAF < 0.05. Skipping calculation at Locus2073 +WARNING: Locus Locus7127 has MAF < 0.05. Skipping calculation at Locus7127 +WARNING: Locus Locus4681 has MAF < 0.05. Skipping calculation at Locus4681 +WARNING: Locus Locus4682 has MAF < 0.05. Skipping calculation at Locus4682 +WARNING: Locus Locus4684 has MAF < 0.05. Skipping calculation at Locus4684 +WARNING: Locus Locus7130 has MAF < 0.05. Skipping calculation at Locus7130 +WARNING: Locus Locus7131 has MAF < 0.05. Skipping calculation at Locus7131 +WARNING: Locus Locus7132 has MAF < 0.05. Skipping calculation at Locus7132 +WARNING: Locus Locus4686 has MAF < 0.05. Skipping calculation at Locus4686 +WARNING: Locus Locus5675 has MAF < 0.05. Skipping calculation at Locus5675 +WARNING: Locus Locus7134 has MAF < 0.05. Skipping calculation at Locus7134 +WARNING: Locus Locus1572 has MAF < 0.05. Skipping calculation at Locus1572 +WARNING: Locus Locus4688 has MAF < 0.05. Skipping calculation at Locus4688 +WARNING: Locus Locus4689 has MAF < 0.05. Skipping calculation at Locus4689 +WARNING: Locus Locus4690 has MAF < 0.05. Skipping calculation at Locus4690 +WARNING: Locus Locus4691 has MAF < 0.05. Skipping calculation at Locus4691 +WARNING: Locus Locus4692 has MAF < 0.05. Skipping calculation at Locus4692 +WARNING: Locus Locus4693 has MAF < 0.05. Skipping calculation at Locus4693 +WARNING: Locus Locus7137 has MAF < 0.05. Skipping calculation at Locus7137 +WARNING: Locus Locus4698 has MAF < 0.05. Skipping calculation at Locus4698 +WARNING: Locus Locus7140 has MAF < 0.05. Skipping calculation at Locus7140 +WARNING: Locus Locus3954 has MAF < 0.05. Skipping calculation at Locus3954 +WARNING: Locus Locus3955 has MAF < 0.05. Skipping calculation at Locus3955 +WARNING: Locus Locus3956 has MAF < 0.05. Skipping calculation at Locus3956 +WARNING: Locus Locus3958 has MAF < 0.05. Skipping calculation at Locus3958 +WARNING: Locus Locus4701 has MAF < 0.05. Skipping calculation at Locus4701 +WARNING: Locus Locus4703 has MAF < 0.05. Skipping calculation at Locus4703 +WARNING: Locus Locus7143 has MAF < 0.05. Skipping calculation at Locus7143 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus1574 +WARNING: Locus Locus1575 has MAF < 0.05. Skipping calculation at Locus1575 +WARNING: Locus Locus4708 has MAF < 0.05. Skipping calculation at Locus4708 +WARNING: Locus Locus4709 has MAF < 0.05. Skipping calculation at Locus4709 +WARNING: Locus Locus7146 has MAF < 0.05. Skipping calculation at Locus7146 +WARNING: Locus Locus2085 has MAF < 0.05. Skipping calculation at Locus2085 +WARNING: Locus Locus3964 has MAF < 0.05. Skipping calculation at Locus3964 +WARNING: Locus Locus7148 has MAF < 0.05. Skipping calculation at Locus7148 +WARNING: Locus Locus5683 has MAF < 0.05. Skipping calculation at Locus5683 +WARNING: Locus Locus7150 has MAF < 0.05. Skipping calculation at Locus7150 +WARNING: Locus Locus5686 has MAF < 0.05. Skipping calculation at Locus5686 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus1576 +WARNING: Locus Locus3968 has MAF < 0.05. Skipping calculation at Locus3968 +WARNING: Locus Locus4716 has MAF < 0.05. Skipping calculation at Locus4716 +WARNING: Locus Locus2091 has MAF < 0.05. Skipping calculation at Locus2091 +WARNING: Locus Locus4719 has MAF < 0.05. Skipping calculation at Locus4719 +WARNING: Locus Locus4720 has MAF < 0.05. Skipping calculation at Locus4720 +WARNING: Locus Locus6377 has MAF < 0.05. Skipping calculation at Locus6377 +WARNING: Locus Locus6378 has MAF < 0.05. Skipping calculation at Locus6378 +WARNING: Locus Locus6379 has MAF < 0.05. Skipping calculation at Locus6379 +WARNING: Locus Locus5692 has MAF < 0.05. Skipping calculation at Locus5692 +WARNING: Locus Locus2096 has MAF < 0.05. Skipping calculation at Locus2096 +WARNING: Locus Locus2097 has MAF < 0.05. Skipping calculation at Locus2097 +WARNING: Locus Locus2099 has MAF < 0.05. Skipping calculation at Locus2099 +WARNING: Locus Locus2871 has MAF < 0.05. Skipping calculation at Locus2871 +WARNING: Locus Locus1582 has MAF < 0.05. Skipping calculation at Locus1582 +WARNING: Locus Locus2103 has MAF < 0.05. Skipping calculation at Locus2103 +WARNING: Locus Locus2874 has MAF < 0.05. Skipping calculation at Locus2874 +WARNING: Locus Locus7154 has MAF < 0.05. Skipping calculation at Locus7154 +WARNING: Locus Locus4733 has MAF < 0.05. Skipping calculation at Locus4733 +WARNING: Locus Locus7155 has MAF < 0.05. Skipping calculation at Locus7155 +WARNING: Locus Locus4734 has MAF < 0.05. Skipping calculation at Locus4734 +WARNING: Locus Locus7158 has MAF < 0.05. Skipping calculation at Locus7158 +WARNING: Locus Locus1584 has MAF < 0.05. Skipping calculation at Locus1584 +WARNING: Locus Locus1585 has MAF < 0.05. Skipping calculation at Locus1585 +WARNING: Locus Locus1587 has MAF < 0.05. Skipping calculation at Locus1587 +WARNING: Locus Locus3981 has MAF < 0.05. Skipping calculation at Locus3981 +WARNING: Locus Locus5697 has MAF < 0.05. Skipping calculation at Locus5697 +WARNING: Locus Locus4740 has MAF < 0.05. Skipping calculation at Locus4740 +WARNING: Locus Locus5700 has MAF < 0.05. Skipping calculation at Locus5700 +WARNING: Locus Locus4747 has MAF < 0.05. Skipping calculation at Locus4747 +WARNING: Locus Locus4748 has MAF < 0.05. Skipping calculation at Locus4748 +WARNING: Locus Locus4749 has MAF < 0.05. Skipping calculation at Locus4749 +WARNING: Locus Locus7162 has MAF < 0.05. Skipping calculation at Locus7162 +WARNING: Locus Locus5705 has MAF < 0.05. Skipping calculation at Locus5705 +WARNING: Locus Locus4753 has MAF < 0.05. Skipping calculation at Locus4753 +WARNING: Locus Locus2110 has MAF < 0.05. Skipping calculation at Locus2110 +WARNING: Locus Locus2111 has MAF < 0.05. Skipping calculation at Locus2111 +WARNING: Locus Locus4755 has MAF < 0.05. Skipping calculation at Locus4755 +WARNING: Locus Locus4756 has MAF < 0.05. Skipping calculation at Locus4756 +WARNING: Locus Locus6385 has MAF < 0.05. Skipping calculation at Locus6385 +WARNING: Locus Locus6386 has MAF < 0.05. Skipping calculation at Locus6386 +WARNING: Locus Locus2880 has MAF < 0.05. Skipping calculation at Locus2880 +WARNING: Locus Locus4762 has MAF < 0.05. Skipping calculation at Locus4762 +WARNING: Locus Locus2882 has MAF < 0.05. Skipping calculation at Locus2882 +WARNING: Locus Locus2883 has MAF < 0.05. Skipping calculation at Locus2883 +WARNING: Locus Locus7167 has MAF < 0.05. Skipping calculation at Locus7167 +WARNING: Locus Locus4770 has MAF < 0.05. Skipping calculation at Locus4770 +WARNING: Locus Locus4771 has MAF < 0.05. Skipping calculation at Locus4771 +WARNING: Locus Locus4772 has MAF < 0.05. Skipping calculation at Locus4772 +WARNING: Locus Locus4773 has MAF < 0.05. Skipping calculation at Locus4773 +WARNING: Locus Locus4774 has MAF < 0.05. Skipping calculation at Locus4774 +WARNING: Locus Locus4775 has MAF < 0.05. Skipping calculation at Locus4775 +WARNING: Locus Locus4776 has MAF < 0.05. Skipping calculation at Locus4776 +WARNING: Locus Locus4777 has MAF < 0.05. Skipping calculation at Locus4777 +WARNING: Locus Locus6389 has MAF < 0.05. Skipping calculation at Locus6389 +WARNING: Locus Locus6390 has MAF < 0.05. Skipping calculation at Locus6390 +WARNING: Locus Locus6391 has MAF < 0.05. Skipping calculation at Locus6391 +WARNING: Locus Locus2886 has MAF < 0.05. Skipping calculation at Locus2886 +WARNING: Locus Locus6396 has MAF < 0.05. Skipping calculation at Locus6396 +WARNING: Locus Locus1592 has MAF < 0.05. Skipping calculation at Locus1592 +WARNING: Locus Locus4782 has MAF < 0.05. Skipping calculation at Locus4782 +WARNING: Locus Locus3994 has MAF < 0.05. Skipping calculation at Locus3994 +WARNING: Locus Locus2115 has MAF < 0.05. Skipping calculation at Locus2115 +WARNING: Locus Locus5710 has MAF < 0.05. Skipping calculation at Locus5710 +WARNING: Locus Locus5711 has MAF < 0.05. Skipping calculation at Locus5711 +WARNING: Locus Locus5712 has MAF < 0.05. Skipping calculation at Locus5712 +WARNING: Locus Locus5713 has MAF < 0.05. Skipping calculation at Locus5713 +WARNING: Locus Locus5714 has MAF < 0.05. Skipping calculation at Locus5714 +WARNING: Locus Locus5715 has MAF < 0.05. Skipping calculation at Locus5715 +WARNING: Locus Locus5716 has MAF < 0.05. Skipping calculation at Locus5716 +WARNING: Locus Locus5717 has MAF < 0.05. Skipping calculation at Locus5717 +WARNING: Locus Locus5718 has MAF < 0.05. Skipping calculation at Locus5718 +WARNING: Locus Locus5719 has MAF < 0.05. Skipping calculation at Locus5719 +WARNING: Locus Locus5720 has MAF < 0.05. Skipping calculation at Locus5720 +WARNING: Locus Locus5721 has MAF < 0.05. Skipping calculation at Locus5721 +WARNING: Locus Locus2889 has MAF < 0.05. Skipping calculation at Locus2889 +WARNING: Locus Locus3996 has MAF < 0.05. Skipping calculation at Locus3996 +WARNING: Locus Locus3997 has MAF < 0.05. Skipping calculation at Locus3997 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7171 +WARNING: Locus Locus7172 has MAF < 0.05. Skipping calculation at Locus7172 +WARNING: Locus Locus7173 has MAF < 0.05. Skipping calculation at Locus7173 +WARNING: Locus Locus7174 has MAF < 0.05. Skipping calculation at Locus7174 +WARNING: Locus Locus7176 has MAF < 0.05. Skipping calculation at Locus7176 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus1593 +WARNING: Locus Locus4003 has MAF < 0.05. Skipping calculation at Locus4003 +WARNING: Locus Locus4004 has MAF < 0.05. Skipping calculation at Locus4004 +WARNING: Locus Locus5725 has MAF < 0.05. Skipping calculation at Locus5725 +WARNING: Locus Locus5726 has MAF < 0.05. Skipping calculation at Locus5726 +WARNING: Locus Locus5727 has MAF < 0.05. Skipping calculation at Locus5727 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7178 +WARNING: Locus Locus7179 has MAF < 0.05. Skipping calculation at Locus7179 +WARNING: Locus Locus7182 has MAF < 0.05. Skipping calculation at Locus7182 +WARNING: Locus Locus7183 has MAF < 0.05. Skipping calculation at Locus7183 +WARNING: Locus Locus7184 has MAF < 0.05. Skipping calculation at Locus7184 +WARNING: Locus Locus7185 has MAF < 0.05. Skipping calculation at Locus7185 +WARNING: Locus Locus5729 has MAF < 0.05. Skipping calculation at Locus5729 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus1595 +WARNING: Locus Locus1596 has MAF < 0.05. Skipping calculation at Locus1596 +WARNING: Locus Locus2118 has MAF < 0.05. Skipping calculation at Locus2118 +WARNING: Locus Locus2119 has MAF < 0.05. Skipping calculation at Locus2119 +WARNING: Locus Locus4785 has MAF < 0.05. Skipping calculation at Locus4785 +WARNING: Locus Locus5732 has MAF < 0.05. Skipping calculation at Locus5732 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus1597 +WARNING: Locus Locus5734 has MAF < 0.05. Skipping calculation at Locus5734 +WARNING: Locus Locus4012 has MAF < 0.05. Skipping calculation at Locus4012 +WARNING: Locus Locus7189 has MAF < 0.05. Skipping calculation at Locus7189 +WARNING: Locus Locus5739 has MAF < 0.05. Skipping calculation at Locus5739 +WARNING: Locus Locus6401 has MAF < 0.05. Skipping calculation at Locus6401 +WARNING: Locus Locus6402 has MAF < 0.05. Skipping calculation at Locus6402 +WARNING: Locus Locus5741 has MAF < 0.05. Skipping calculation at Locus5741 +WARNING: Locus Locus5742 has MAF < 0.05. Skipping calculation at Locus5742 +WARNING: Locus Locus5743 has MAF < 0.05. Skipping calculation at Locus5743 +WARNING: Locus Locus5744 has MAF < 0.05. Skipping calculation at Locus5744 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus1599 +WARNING: Locus Locus1600 has MAF < 0.05. Skipping calculation at Locus1600 +WARNING: Locus Locus4789 has MAF < 0.05. Skipping calculation at Locus4789 +WARNING: Locus Locus4017 has MAF < 0.05. Skipping calculation at Locus4017 +WARNING: Locus Locus7191 has MAF < 0.05. Skipping calculation at Locus7191 +WARNING: Locus Locus7192 has MAF < 0.05. Skipping calculation at Locus7192 +WARNING: Locus Locus7193 has MAF < 0.05. Skipping calculation at Locus7193 +WARNING: Locus Locus1603 has MAF < 0.05. Skipping calculation at Locus1603 +WARNING: Locus Locus5747 has MAF < 0.05. Skipping calculation at Locus5747 +WARNING: Locus Locus4019 has MAF < 0.05. Skipping calculation at Locus4019 +WARNING: Locus Locus4793 has MAF < 0.05. Skipping calculation at Locus4793 +WARNING: Locus Locus5749 has MAF < 0.05. Skipping calculation at Locus5749 +WARNING: Locus Locus5750 has MAF < 0.05. Skipping calculation at Locus5750 +WARNING: Locus Locus5751 has MAF < 0.05. Skipping calculation at Locus5751 +WARNING: Locus Locus5752 has MAF < 0.05. Skipping calculation at Locus5752 +WARNING: Locus Locus5753 has MAF < 0.05. Skipping calculation at Locus5753 +WARNING: Locus Locus5754 has MAF < 0.05. Skipping calculation at Locus5754 +WARNING: Locus Locus2894 has MAF < 0.05. Skipping calculation at Locus2894 +WARNING: Locus Locus2896 has MAF < 0.05. Skipping calculation at Locus2896 +WARNING: Locus Locus4795 has MAF < 0.05. Skipping calculation at Locus4795 +WARNING: Locus Locus6408 has MAF < 0.05. Skipping calculation at Locus6408 +WARNING: Locus Locus5756 has MAF < 0.05. Skipping calculation at Locus5756 +WARNING: Locus Locus5758 has MAF < 0.05. Skipping calculation at Locus5758 +WARNING: Locus Locus4025 has MAF < 0.05. Skipping calculation at Locus4025 +WARNING: Locus Locus4026 has MAF < 0.05. Skipping calculation at Locus4026 +WARNING: Locus Locus2125 has MAF < 0.05. Skipping calculation at Locus2125 +WARNING: Locus Locus2126 has MAF < 0.05. Skipping calculation at Locus2126 +WARNING: Locus Locus2127 has MAF < 0.05. Skipping calculation at Locus2127 +WARNING: Locus Locus4806 has MAF < 0.05. Skipping calculation at Locus4806 +WARNING: Locus Locus4029 has MAF < 0.05. Skipping calculation at Locus4029 +WARNING: Locus Locus4030 has MAF < 0.05. Skipping calculation at Locus4030 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7195 +WARNING: Locus Locus7196 has MAF < 0.05. Skipping calculation at Locus7196 +WARNING: Locus Locus6412 has MAF < 0.05. Skipping calculation at Locus6412 +WARNING: Locus Locus4033 has MAF < 0.05. Skipping calculation at Locus4033 +WARNING: Locus Locus1609 has MAF < 0.05. Skipping calculation at Locus1609 +WARNING: Locus Locus1610 has MAF < 0.05. Skipping calculation at Locus1610 +WARNING: Locus Locus4036 has MAF < 0.05. Skipping calculation at Locus4036 +WARNING: Locus Locus4037 has MAF < 0.05. Skipping calculation at Locus4037 +WARNING: Locus Locus2899 has MAF < 0.05. Skipping calculation at Locus2899 +WARNING: Locus Locus2900 has MAF < 0.05. Skipping calculation at Locus2900 +WARNING: Locus Locus5763 has MAF < 0.05. Skipping calculation at Locus5763 +WARNING: Locus Locus4039 has MAF < 0.05. Skipping calculation at Locus4039 +WARNING: Locus Locus7201 has MAF < 0.05. Skipping calculation at Locus7201 +WARNING: Locus Locus7202 has MAF < 0.05. Skipping calculation at Locus7202 +WARNING: Locus Locus7203 has MAF < 0.05. Skipping calculation at Locus7203 +WARNING: Locus Locus7204 has MAF < 0.05. Skipping calculation at Locus7204 +WARNING: Locus Locus2902 has MAF < 0.05. Skipping calculation at Locus2902 +WARNING: Locus Locus1614 has MAF < 0.05. Skipping calculation at Locus1614 +WARNING: Locus Locus4042 has MAF < 0.05. Skipping calculation at Locus4042 +WARNING: Locus Locus4043 has MAF < 0.05. Skipping calculation at Locus4043 +WARNING: Locus Locus4044 has MAF < 0.05. Skipping calculation at Locus4044 +WARNING: Locus Locus5766 has MAF < 0.05. Skipping calculation at Locus5766 +WARNING: Locus Locus5767 has MAF < 0.05. Skipping calculation at Locus5767 +WARNING: Locus Locus5768 has MAF < 0.05. Skipping calculation at Locus5768 +WARNING: Locus Locus1616 has MAF < 0.05. Skipping calculation at Locus1616 +WARNING: Locus Locus1617 has MAF < 0.05. Skipping calculation at Locus1617 +WARNING: Locus Locus4817 has MAF < 0.05. Skipping calculation at Locus4817 +WARNING: Locus Locus2129 has MAF < 0.05. Skipping calculation at Locus2129 +WARNING: Locus Locus4046 has MAF < 0.05. Skipping calculation at Locus4046 +WARNING: Locus Locus4048 has MAF < 0.05. Skipping calculation at Locus4048 +WARNING: Locus Locus4823 has MAF < 0.05. Skipping calculation at Locus4823 +WARNING: Locus Locus4824 has MAF < 0.05. Skipping calculation at Locus4824 +WARNING: Locus Locus5770 has MAF < 0.05. Skipping calculation at Locus5770 +WARNING: Locus Locus2131 has MAF < 0.05. Skipping calculation at Locus2131 +WARNING: Locus Locus2132 has MAF < 0.05. Skipping calculation at Locus2132 +WARNING: Locus Locus2133 has MAF < 0.05. Skipping calculation at Locus2133 +WARNING: Locus Locus5772 has MAF < 0.05. Skipping calculation at Locus5772 +WARNING: Locus Locus5774 has MAF < 0.05. Skipping calculation at Locus5774 +WARNING: Locus Locus5775 has MAF < 0.05. Skipping calculation at Locus5775 +WARNING: Locus Locus4826 has MAF < 0.05. Skipping calculation at Locus4826 +WARNING: Locus Locus4827 has MAF < 0.05. Skipping calculation at Locus4827 +WARNING: Locus Locus4051 has MAF < 0.05. Skipping calculation at Locus4051 +WARNING: Locus Locus4052 has MAF < 0.05. Skipping calculation at Locus4052 +WARNING: Locus Locus4054 has MAF < 0.05. Skipping calculation at Locus4054 +WARNING: Locus Locus4055 has MAF < 0.05. Skipping calculation at Locus4055 +WARNING: Locus Locus4056 has MAF < 0.05. Skipping calculation at Locus4056 +WARNING: Locus Locus2909 has MAF < 0.05. Skipping calculation at Locus2909 +WARNING: Locus Locus4058 has MAF < 0.05. Skipping calculation at Locus4058 +WARNING: Locus Locus4059 has MAF < 0.05. Skipping calculation at Locus4059 +WARNING: Locus Locus4060 has MAF < 0.05. Skipping calculation at Locus4060 +WARNING: Locus Locus4061 has MAF < 0.05. Skipping calculation at Locus4061 +WARNING: Locus Locus4062 has MAF < 0.05. Skipping calculation at Locus4062 +WARNING: Locus Locus4063 has MAF < 0.05. Skipping calculation at Locus4063 +WARNING: Locus Locus4064 has MAF < 0.05. Skipping calculation at Locus4064 +WARNING: Locus Locus4065 has MAF < 0.05. Skipping calculation at Locus4065 +WARNING: Locus Locus4066 has MAF < 0.05. Skipping calculation at Locus4066 +WARNING: Locus Locus4067 has MAF < 0.05. Skipping calculation at Locus4067 +WARNING: Locus Locus4830 has MAF < 0.05. Skipping calculation at Locus4830 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7205 +WARNING: Locus Locus7206 has MAF < 0.05. Skipping calculation at Locus7206 +WARNING: Locus Locus4834 has MAF < 0.05. Skipping calculation at Locus4834 +WARNING: Locus Locus2135 has MAF < 0.05. Skipping calculation at Locus2135 +WARNING: Locus Locus5778 has MAF < 0.05. Skipping calculation at Locus5778 +WARNING: Locus Locus7210 has MAF < 0.05. Skipping calculation at Locus7210 +WARNING: Locus Locus2137 has MAF < 0.05. Skipping calculation at Locus2137 +WARNING: Locus Locus6419 has MAF < 0.05. Skipping calculation at Locus6419 +WARNING: Locus Locus2911 has MAF < 0.05. Skipping calculation at Locus2911 +WARNING: Locus Locus2912 has MAF < 0.05. Skipping calculation at Locus2912 +WARNING: Locus Locus4072 has MAF < 0.05. Skipping calculation at Locus4072 +WARNING: Locus Locus4073 has MAF < 0.05. Skipping calculation at Locus4073 +WARNING: Locus Locus4074 has MAF < 0.05. Skipping calculation at Locus4074 +WARNING: Locus Locus1621 has MAF < 0.05. Skipping calculation at Locus1621 +WARNING: Locus Locus4076 has MAF < 0.05. Skipping calculation at Locus4076 +WARNING: Locus Locus2915 has MAF < 0.05. Skipping calculation at Locus2915 +WARNING: Locus Locus2916 has MAF < 0.05. Skipping calculation at Locus2916 +WARNING: Locus Locus6421 has MAF < 0.05. Skipping calculation at Locus6421 +WARNING: Locus Locus6422 has MAF < 0.05. Skipping calculation at Locus6422 +WARNING: Locus Locus6423 has MAF < 0.05. Skipping calculation at Locus6423 +WARNING: Locus Locus4839 has MAF < 0.05. Skipping calculation at Locus4839 +WARNING: Locus Locus5782 has MAF < 0.05. Skipping calculation at Locus5782 +WARNING: Locus Locus5783 has MAF < 0.05. Skipping calculation at Locus5783 +WARNING: Locus Locus5784 has MAF < 0.05. Skipping calculation at Locus5784 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7213 +WARNING: Locus Locus4079 has MAF < 0.05. Skipping calculation at Locus4079 +WARNING: Locus Locus4080 has MAF < 0.05. Skipping calculation at Locus4080 +WARNING: Locus Locus7215 has MAF < 0.05. Skipping calculation at Locus7215 +WARNING: Locus Locus5786 has MAF < 0.05. Skipping calculation at Locus5786 +WARNING: Locus Locus5787 has MAF < 0.05. Skipping calculation at Locus5787 +WARNING: Locus Locus5789 has MAF < 0.05. Skipping calculation at Locus5789 +WARNING: Locus Locus7217 has MAF < 0.05. Skipping calculation at Locus7217 +WARNING: Locus Locus4844 has MAF < 0.05. Skipping calculation at Locus4844 +WARNING: Locus Locus7219 has MAF < 0.05. Skipping calculation at Locus7219 +WARNING: Locus Locus7220 has MAF < 0.05. Skipping calculation at Locus7220 +WARNING: Locus Locus4846 has MAF < 0.05. Skipping calculation at Locus4846 +WARNING: Locus Locus7223 has MAF < 0.05. Skipping calculation at Locus7223 +WARNING: Locus Locus7224 has MAF < 0.05. Skipping calculation at Locus7224 +WARNING: Locus Locus4849 has MAF < 0.05. Skipping calculation at Locus4849 +WARNING: Locus Locus5791 has MAF < 0.05. Skipping calculation at Locus5791 +WARNING: Locus Locus5792 has MAF < 0.05. Skipping calculation at Locus5792 +WARNING: Locus Locus7227 has MAF < 0.05. Skipping calculation at Locus7227 +WARNING: Locus Locus7228 has MAF < 0.05. Skipping calculation at Locus7228 +WARNING: Locus Locus7231 has MAF < 0.05. Skipping calculation at Locus7231 +WARNING: Locus Locus4852 has MAF < 0.05. Skipping calculation at Locus4852 +WARNING: Locus Locus4089 has MAF < 0.05. Skipping calculation at Locus4089 +WARNING: Locus Locus7236 has MAF < 0.05. Skipping calculation at Locus7236 +WARNING: Locus Locus7237 has MAF < 0.05. Skipping calculation at Locus7237 +WARNING: Locus Locus7238 has MAF < 0.05. Skipping calculation at Locus7238 +WARNING: Locus Locus7239 has MAF < 0.05. Skipping calculation at Locus7239 +WARNING: Locus Locus7240 has MAF < 0.05. Skipping calculation at Locus7240 +WARNING: Locus Locus7241 has MAF < 0.05. Skipping calculation at Locus7241 +WARNING: Locus Locus7242 has MAF < 0.05. Skipping calculation at Locus7242 +WARNING: Locus Locus7243 has MAF < 0.05. Skipping calculation at Locus7243 +WARNING: Locus Locus4854 has MAF < 0.05. Skipping calculation at Locus4854 +WARNING: Locus Locus7245 has MAF < 0.05. Skipping calculation at Locus7245 +WARNING: Locus Locus7246 has MAF < 0.05. Skipping calculation at Locus7246 +WARNING: Locus Locus7247 has MAF < 0.05. Skipping calculation at Locus7247 +WARNING: Locus Locus7249 has MAF < 0.05. Skipping calculation at Locus7249 +WARNING: Locus Locus7250 has MAF < 0.05. Skipping calculation at Locus7250 +WARNING: Locus Locus4856 has MAF < 0.05. Skipping calculation at Locus4856 +WARNING: Locus Locus4092 has MAF < 0.05. Skipping calculation at Locus4092 +WARNING: Locus Locus2143 has MAF < 0.05. Skipping calculation at Locus2143 +WARNING: Locus Locus2144 has MAF < 0.05. Skipping calculation at Locus2144 +WARNING: Locus Locus7256 has MAF < 0.05. Skipping calculation at Locus7256 +WARNING: Locus Locus7257 has MAF < 0.05. Skipping calculation at Locus7257 +WARNING: Locus Locus2921 has MAF < 0.05. Skipping calculation at Locus2921 +WARNING: Locus Locus5796 has MAF < 0.05. Skipping calculation at Locus5796 +WARNING: Locus Locus2926 has MAF < 0.05. Skipping calculation at Locus2926 +WARNING: Locus Locus4862 has MAF < 0.05. Skipping calculation at Locus4862 +WARNING: Locus Locus4867 has MAF < 0.05. Skipping calculation at Locus4867 +WARNING: Locus Locus4868 has MAF < 0.05. Skipping calculation at Locus4868 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7259 +WARNING: Locus Locus7260 has MAF < 0.05. Skipping calculation at Locus7260 +WARNING: Locus Locus7261 has MAF < 0.05. Skipping calculation at Locus7261 +WARNING: Locus Locus7262 has MAF < 0.05. Skipping calculation at Locus7262 +WARNING: Locus Locus4095 has MAF < 0.05. Skipping calculation at Locus4095 +WARNING: Locus Locus7264 has MAF < 0.05. Skipping calculation at Locus7264 +WARNING: Locus Locus6428 has MAF < 0.05. Skipping calculation at Locus6428 +WARNING: Locus Locus7266 has MAF < 0.05. Skipping calculation at Locus7266 +WARNING: Locus Locus7267 has MAF < 0.05. Skipping calculation at Locus7267 +WARNING: Locus Locus7268 has MAF < 0.05. Skipping calculation at Locus7268 +WARNING: Locus Locus7270 has MAF < 0.05. Skipping calculation at Locus7270 +WARNING: Locus Locus7271 has MAF < 0.05. Skipping calculation at Locus7271 +WARNING: Locus Locus4098 has MAF < 0.05. Skipping calculation at Locus4098 +WARNING: Locus Locus7273 has MAF < 0.05. Skipping calculation at Locus7273 +WARNING: Locus Locus7274 has MAF < 0.05. Skipping calculation at Locus7274 +WARNING: Locus Locus7276 has MAF < 0.05. Skipping calculation at Locus7276 +WARNING: Locus Locus7280 has MAF < 0.05. Skipping calculation at Locus7280 +WARNING: Locus Locus7282 has MAF < 0.05. Skipping calculation at Locus7282 +WARNING: Locus Locus7285 has MAF < 0.05. Skipping calculation at Locus7285 +WARNING: Locus Locus7286 has MAF < 0.05. Skipping calculation at Locus7286 +WARNING: Locus Locus7288 has MAF < 0.05. Skipping calculation at Locus7288 +WARNING: Locus Locus4101 has MAF < 0.05. Skipping calculation at Locus4101 +WARNING: Locus Locus4102 has MAF < 0.05. Skipping calculation at Locus4102 +WARNING: Locus Locus4103 has MAF < 0.05. Skipping calculation at Locus4103 +WARNING: Locus Locus4104 has MAF < 0.05. Skipping calculation at Locus4104 +WARNING: Locus Locus7290 has MAF < 0.05. Skipping calculation at Locus7290 +WARNING: Locus Locus7292 has MAF < 0.05. Skipping calculation at Locus7292 +WARNING: Locus Locus4880 has MAF < 0.05. Skipping calculation at Locus4880 +WARNING: Locus Locus4108 has MAF < 0.05. Skipping calculation at Locus4108 +WARNING: Locus Locus4883 has MAF < 0.05. Skipping calculation at Locus4883 +WARNING: Locus Locus2931 has MAF < 0.05. Skipping calculation at Locus2931 +WARNING: Locus Locus2932 has MAF < 0.05. Skipping calculation at Locus2932 +WARNING: Locus Locus4110 has MAF < 0.05. Skipping calculation at Locus4110 +WARNING: Locus Locus4890 has MAF < 0.05. Skipping calculation at Locus4890 +WARNING: Locus Locus4891 has MAF < 0.05. Skipping calculation at Locus4891 +WARNING: Locus Locus4893 has MAF < 0.05. Skipping calculation at Locus4893 +WARNING: Locus Locus4114 has MAF < 0.05. Skipping calculation at Locus4114 +WARNING: Locus Locus4897 has MAF < 0.05. Skipping calculation at Locus4897 +WARNING: Locus Locus4899 has MAF < 0.05. Skipping calculation at Locus4899 +WARNING: Locus Locus4900 has MAF < 0.05. Skipping calculation at Locus4900 +WARNING: Locus Locus4901 has MAF < 0.05. Skipping calculation at Locus4901 +WARNING: Locus Locus2939 has MAF < 0.05. Skipping calculation at Locus2939 +WARNING: Locus Locus2941 has MAF < 0.05. Skipping calculation at Locus2941 +WARNING: Locus Locus4904 has MAF < 0.05. Skipping calculation at Locus4904 +WARNING: Locus Locus4906 has MAF < 0.05. Skipping calculation at Locus4906 +WARNING: Locus Locus4907 has MAF < 0.05. Skipping calculation at Locus4907 +WARNING: Locus Locus4908 has MAF < 0.05. Skipping calculation at Locus4908 +WARNING: Locus Locus4909 has MAF < 0.05. Skipping calculation at Locus4909 +WARNING: Locus Locus4910 has MAF < 0.05. Skipping calculation at Locus4910 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7298 +WARNING: Locus Locus7299 has MAF < 0.05. Skipping calculation at Locus7299 +WARNING: Locus Locus1640 has MAF < 0.05. Skipping calculation at Locus1640 +WARNING: Locus Locus7302 has MAF < 0.05. Skipping calculation at Locus7302 +WARNING: Locus Locus4913 has MAF < 0.05. Skipping calculation at Locus4913 +WARNING: Locus Locus4122 has MAF < 0.05. Skipping calculation at Locus4122 +WARNING: Locus Locus4123 has MAF < 0.05. Skipping calculation at Locus4123 +WARNING: Locus Locus4916 has MAF < 0.05. Skipping calculation at Locus4916 +WARNING: Locus Locus4918 has MAF < 0.05. Skipping calculation at Locus4918 +WARNING: Locus Locus4919 has MAF < 0.05. Skipping calculation at Locus4919 +WARNING: Locus Locus4126 has MAF < 0.05. Skipping calculation at Locus4126 +WARNING: Locus Locus4127 has MAF < 0.05. Skipping calculation at Locus4127 +WARNING: Locus Locus1645 has MAF < 0.05. Skipping calculation at Locus1645 +WARNING: Locus Locus4921 has MAF < 0.05. Skipping calculation at Locus4921 +WARNING: Locus Locus4922 has MAF < 0.05. Skipping calculation at Locus4922 +WARNING: Locus Locus4923 has MAF < 0.05. Skipping calculation at Locus4923 +WARNING: Locus Locus4924 has MAF < 0.05. Skipping calculation at Locus4924 +WARNING: Locus Locus4925 has MAF < 0.05. Skipping calculation at Locus4925 +WARNING: Locus Locus1647 has MAF < 0.05. Skipping calculation at Locus1647 +WARNING: Locus Locus1648 has MAF < 0.05. Skipping calculation at Locus1648 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7305 +WARNING: Locus Locus7306 has MAF < 0.05. Skipping calculation at Locus7306 +WARNING: Locus Locus2152 has MAF < 0.05. Skipping calculation at Locus2152 +WARNING: Locus Locus2153 has MAF < 0.05. Skipping calculation at Locus2153 +WARNING: Locus Locus6431 has MAF < 0.05. Skipping calculation at Locus6431 +WARNING: Locus Locus2947 has MAF < 0.05. Skipping calculation at Locus2947 +WARNING: Locus Locus4932 has MAF < 0.05. Skipping calculation at Locus4932 +WARNING: Locus Locus4934 has MAF < 0.05. Skipping calculation at Locus4934 +WARNING: Locus Locus4936 has MAF < 0.05. Skipping calculation at Locus4936 +WARNING: Locus Locus4937 has MAF < 0.05. Skipping calculation at Locus4937 +WARNING: Locus Locus7309 has MAF < 0.05. Skipping calculation at Locus7309 +WARNING: Locus Locus4940 has MAF < 0.05. Skipping calculation at Locus4940 +WARNING: Locus Locus2955 has MAF < 0.05. Skipping calculation at Locus2955 +WARNING: Locus Locus2956 has MAF < 0.05. Skipping calculation at Locus2956 +WARNING: Locus Locus4946 has MAF < 0.05. Skipping calculation at Locus4946 +WARNING: Locus Locus4947 has MAF < 0.05. Skipping calculation at Locus4947 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7311 +WARNING: Locus Locus2158 has MAF < 0.05. Skipping calculation at Locus2158 +WARNING: Locus Locus2159 has MAF < 0.05. Skipping calculation at Locus2159 +WARNING: Locus Locus4132 has MAF < 0.05. Skipping calculation at Locus4132 +WARNING: Locus Locus6434 has MAF < 0.05. Skipping calculation at Locus6434 +WARNING: Locus Locus6435 has MAF < 0.05. Skipping calculation at Locus6435 +WARNING: Locus Locus6436 has MAF < 0.05. Skipping calculation at Locus6436 +WARNING: Locus Locus6437 has MAF < 0.05. Skipping calculation at Locus6437 +WARNING: Locus Locus6438 has MAF < 0.05. Skipping calculation at Locus6438 +WARNING: Locus Locus4953 has MAF < 0.05. Skipping calculation at Locus4953 +WARNING: Locus Locus4955 has MAF < 0.05. Skipping calculation at Locus4955 +WARNING: Locus Locus2960 has MAF < 0.05. Skipping calculation at Locus2960 +WARNING: Locus Locus2163 has MAF < 0.05. Skipping calculation at Locus2163 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7313 +WARNING: Locus Locus7314 has MAF < 0.05. Skipping calculation at Locus7314 +WARNING: Locus Locus7315 has MAF < 0.05. Skipping calculation at Locus7315 +WARNING: Locus Locus4138 has MAF < 0.05. Skipping calculation at Locus4138 +WARNING: Locus Locus4139 has MAF < 0.05. Skipping calculation at Locus4139 +WARNING: Locus Locus6441 has MAF < 0.05. Skipping calculation at Locus6441 +WARNING: Locus Locus7317 has MAF < 0.05. Skipping calculation at Locus7317 +WARNING: Locus Locus2167 has MAF < 0.05. Skipping calculation at Locus2167 +WARNING: Locus Locus7320 has MAF < 0.05. Skipping calculation at Locus7320 +WARNING: Locus Locus5815 has MAF < 0.05. Skipping calculation at Locus5815 +WARNING: Locus Locus5816 has MAF < 0.05. Skipping calculation at Locus5816 +WARNING: Locus Locus7324 has MAF < 0.05. Skipping calculation at Locus7324 +WARNING: Locus Locus4964 has MAF < 0.05. Skipping calculation at Locus4964 +WARNING: Locus Locus4966 has MAF < 0.05. Skipping calculation at Locus4966 +WARNING: Locus Locus7328 has MAF < 0.05. Skipping calculation at Locus7328 +WARNING: Locus Locus4968 has MAF < 0.05. Skipping calculation at Locus4968 +WARNING: Locus Locus7330 has MAF < 0.05. Skipping calculation at Locus7330 +WARNING: Locus Locus7332 has MAF < 0.05. Skipping calculation at Locus7332 +WARNING: Locus Locus4970 has MAF < 0.05. Skipping calculation at Locus4970 +WARNING: Locus Locus4971 has MAF < 0.05. Skipping calculation at Locus4971 +WARNING: Locus Locus4972 has MAF < 0.05. Skipping calculation at Locus4972 +WARNING: Locus Locus5819 has MAF < 0.05. Skipping calculation at Locus5819 +WARNING: Locus Locus5820 has MAF < 0.05. Skipping calculation at Locus5820 +WARNING: Locus Locus4976 has MAF < 0.05. Skipping calculation at Locus4976 +WARNING: Locus Locus2171 has MAF < 0.05. Skipping calculation at Locus2171 +WARNING: Locus Locus4148 has MAF < 0.05. Skipping calculation at Locus4148 +WARNING: Locus Locus7334 has MAF < 0.05. Skipping calculation at Locus7334 +WARNING: Locus Locus4150 has MAF < 0.05. Skipping calculation at Locus4150 +WARNING: Locus Locus4982 has MAF < 0.05. Skipping calculation at Locus4982 +WARNING: Locus Locus7340 has MAF < 0.05. Skipping calculation at Locus7340 +WARNING: Locus Locus7341 has MAF < 0.05. Skipping calculation at Locus7341 +WARNING: Locus Locus7342 has MAF < 0.05. Skipping calculation at Locus7342 +WARNING: Locus Locus4154 has MAF < 0.05. Skipping calculation at Locus4154 +WARNING: Locus Locus4155 has MAF < 0.05. Skipping calculation at Locus4155 +WARNING: Locus Locus4156 has MAF < 0.05. Skipping calculation at Locus4156 +WARNING: Locus Locus4157 has MAF < 0.05. Skipping calculation at Locus4157 +WARNING: Locus Locus4158 has MAF < 0.05. Skipping calculation at Locus4158 +WARNING: Locus Locus4159 has MAF < 0.05. Skipping calculation at Locus4159 +WARNING: Locus Locus2970 has MAF < 0.05. Skipping calculation at Locus2970 +WARNING: Locus Locus7346 has MAF < 0.05. Skipping calculation at Locus7346 +WARNING: Locus Locus2972 has MAF < 0.05. Skipping calculation at Locus2972 +WARNING: Locus Locus2973 has MAF < 0.05. Skipping calculation at Locus2973 +WARNING: Locus Locus4161 has MAF < 0.05. Skipping calculation at Locus4161 +WARNING: Locus Locus4162 has MAF < 0.05. Skipping calculation at Locus4162 +WARNING: Locus Locus2975 has MAF < 0.05. Skipping calculation at Locus2975 +WARNING: Locus Locus2175 has MAF < 0.05. Skipping calculation at Locus2175 +WARNING: Locus Locus6444 has MAF < 0.05. Skipping calculation at Locus6444 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7351 +WARNING: Locus Locus6446 has MAF < 0.05. Skipping calculation at Locus6446 +WARNING: Locus Locus2977 has MAF < 0.05. Skipping calculation at Locus2977 +WARNING: Locus Locus2980 has MAF < 0.05. Skipping calculation at Locus2980 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7352 +WARNING: Locus Locus6453 has MAF < 0.05. Skipping calculation at Locus6453 +WARNING: Locus Locus6454 has MAF < 0.05. Skipping calculation at Locus6454 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7353 +WARNING: Locus Locus6460 has MAF < 0.05. Skipping calculation at Locus6460 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7357 +WARNING: Locus Locus7358 has MAF < 0.05. Skipping calculation at Locus7358 +WARNING: Locus Locus2986 has MAF < 0.05. Skipping calculation at Locus2986 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7359 +WARNING: Locus Locus2186 has MAF < 0.05. Skipping calculation at Locus2186 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7362 +WARNING: Locus Locus7363 has MAF < 0.05. Skipping calculation at Locus7363 +WARNING: Locus Locus7364 has MAF < 0.05. Skipping calculation at Locus7364 +WARNING: Locus Locus2995 has MAF < 0.05. Skipping calculation at Locus2995 +WARNING: Locus Locus2997 has MAF < 0.05. Skipping calculation at Locus2997 +WARNING: Locus Locus2998 has MAF < 0.05. Skipping calculation at Locus2998 +WARNING: Locus Locus2189 has MAF < 0.05. Skipping calculation at Locus2189 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7366 +WARNING: Locus Locus6469 has MAF < 0.05. Skipping calculation at Locus6469 +WARNING: Locus Locus6470 has MAF < 0.05. Skipping calculation at Locus6470 +WARNING: Locus Locus7369 has MAF < 0.05. Skipping calculation at Locus7369 +WARNING: Locus Locus7371 has MAF < 0.05. Skipping calculation at Locus7371 +WARNING: Locus Locus7372 has MAF < 0.05. Skipping calculation at Locus7372 +WARNING: Locus Locus6472 has MAF < 0.05. Skipping calculation at Locus6472 +WARNING: Locus Locus6473 has MAF < 0.05. Skipping calculation at Locus6473 +WARNING: Locus Locus2191 has MAF < 0.05. Skipping calculation at Locus2191 +WARNING: Locus Locus7374 has MAF < 0.05. Skipping calculation at Locus7374 +WARNING: Locus Locus6477 has MAF < 0.05. Skipping calculation at Locus6477 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7375 +WARNING: Locus Locus7377 has MAF < 0.05. Skipping calculation at Locus7377 +WARNING: Locus Locus7381 has MAF < 0.05. Skipping calculation at Locus7381 +WARNING: Locus Locus7382 has MAF < 0.05. Skipping calculation at Locus7382 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7384 +WARNING: Locus Locus7385 has MAF < 0.05. Skipping calculation at Locus7385 +WARNING: Locus Locus7387 has MAF < 0.05. Skipping calculation at Locus7387 +WARNING: Locus Locus7388 has MAF < 0.05. Skipping calculation at Locus7388 +WARNING: Locus Locus7389 has MAF < 0.05. Skipping calculation at Locus7389 +WARNING: Locus Locus7391 has MAF < 0.05. Skipping calculation at Locus7391 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7392 +WARNING: Locus Locus7393 has MAF < 0.05. Skipping calculation at Locus7393 +WARNING: Locus Locus6483 has MAF < 0.05. Skipping calculation at Locus6483 +WARNING: Locus Locus7395 has MAF < 0.05. Skipping calculation at Locus7395 +WARNING: Locus Locus7396 has MAF < 0.05. Skipping calculation at Locus7396 +WARNING: Locus Locus7397 has MAF < 0.05. Skipping calculation at Locus7397 +WARNING: Locus Locus2198 has MAF < 0.05. Skipping calculation at Locus2198 +WARNING: Locus Locus7399 has MAF < 0.05. Skipping calculation at Locus7399 +WARNING: Locus Locus6486 has MAF < 0.05. Skipping calculation at Locus6486 +WARNING: Locus Locus6487 has MAF < 0.05. Skipping calculation at Locus6487 +WARNING: Locus Locus6488 has MAF < 0.05. Skipping calculation at Locus6488 +WARNING: Locus Locus6491 has MAF < 0.05. Skipping calculation at Locus6491 +WARNING: Locus Locus7404 has MAF < 0.05. Skipping calculation at Locus7404 +WARNING: Locus Locus7407 has MAF < 0.05. Skipping calculation at Locus7407 +WARNING: Locus Locus7409 has MAF < 0.05. Skipping calculation at Locus7409 +WARNING: Locus Locus7410 has MAF < 0.05. Skipping calculation at Locus7410 +WARNING: Locus Locus7411 has MAF < 0.05. Skipping calculation at Locus7411 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7413 +WARNING: Locus Locus7416 has MAF < 0.05. Skipping calculation at Locus7416 +WARNING: Locus Locus6499 has MAF < 0.05. Skipping calculation at Locus6499 +WARNING: Locus Locus6502 has MAF < 0.05. Skipping calculation at Locus6502 +WARNING: Locus Locus6503 has MAF < 0.05. Skipping calculation at Locus6503 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7418 +WARNING: Locus Locus2211 has MAF < 0.05. Skipping calculation at Locus2211 +WARNING: Locus Locus2212 has MAF < 0.05. Skipping calculation at Locus2212 +WARNING: Locus Locus2217 has MAF < 0.05. Skipping calculation at Locus2217 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7422 +WARNING: Locus Locus2222 has MAF < 0.05. Skipping calculation at Locus2222 +WARNING: Locus Locus7426 has MAF < 0.05. Skipping calculation at Locus7426 +WARNING: Locus Locus7427 has MAF < 0.05. Skipping calculation at Locus7427 +WARNING: Locus Locus7430 has MAF < 0.05. Skipping calculation at Locus7430 +WARNING: Locus Locus7433 has MAF < 0.05. Skipping calculation at Locus7433 +WARNING: Locus Locus7434 has MAF < 0.05. Skipping calculation at Locus7434 +WARNING: Locus Locus7435 has MAF < 0.05. Skipping calculation at Locus7435 +WARNING: Locus Locus7438 has MAF < 0.05. Skipping calculation at Locus7438 +WARNING: Locus Locus7441 has MAF < 0.05. Skipping calculation at Locus7441 +WARNING: Locus Locus7442 has MAF < 0.05. Skipping calculation at Locus7442 +WARNING: Locus Locus7444 has MAF < 0.05. Skipping calculation at Locus7444 +WARNING: Locus Locus7445 has MAF < 0.05. Skipping calculation at Locus7445 +WARNING: Locus Locus3015 has MAF < 0.05. Skipping calculation at Locus3015 +WARNING: Locus Locus7447 has MAF < 0.05. Skipping calculation at Locus7447 +WARNING: Locus Locus3017 has MAF < 0.05. Skipping calculation at Locus3017 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7448 +WARNING: Locus Locus7449 has MAF < 0.05. Skipping calculation at Locus7449 +WARNING: Locus Locus7451 has MAF < 0.05. Skipping calculation at Locus7451 +WARNING: Locus Locus7454 has MAF < 0.05. Skipping calculation at Locus7454 +WARNING: Locus Locus7455 has MAF < 0.05. Skipping calculation at Locus7455 +WARNING: Locus Locus7457 has MAF < 0.05. Skipping calculation at Locus7457 +WARNING: Locus Locus2231 has MAF < 0.05. Skipping calculation at Locus2231 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus6515 +WARNING: Locus Locus6516 has MAF < 0.05. Skipping calculation at Locus6516 +WARNING: Locus Locus3024 has MAF < 0.05. Skipping calculation at Locus3024 +WARNING: Locus Locus2234 has MAF < 0.05. Skipping calculation at Locus2234 +WARNING: Locus Locus6520 has MAF < 0.05. Skipping calculation at Locus6520 +WARNING: Locus Locus2237 has MAF < 0.05. Skipping calculation at Locus2237 +WARNING: Locus Locus3026 has MAF < 0.05. Skipping calculation at Locus3026 +WARNING: Locus Locus6523 has MAF < 0.05. Skipping calculation at Locus6523 +WARNING: Locus Locus6524 has MAF < 0.05. Skipping calculation at Locus6524 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7459 +WARNING: Locus Locus6526 has MAF < 0.05. Skipping calculation at Locus6526 +WARNING: Locus Locus6527 has MAF < 0.05. Skipping calculation at Locus6527 +WARNING: Locus Locus6528 has MAF < 0.05. Skipping calculation at Locus6528 +WARNING: Locus Locus6529 has MAF < 0.05. Skipping calculation at Locus6529 +WARNING: Locus Locus7461 has MAF < 0.05. Skipping calculation at Locus7461 +WARNING: Locus Locus7462 has MAF < 0.05. Skipping calculation at Locus7462 +WARNING: Locus Locus7463 has MAF < 0.05. Skipping calculation at Locus7463 +WARNING: Locus Locus7464 has MAF < 0.05. Skipping calculation at Locus7464 +WARNING: Locus Locus7465 has MAF < 0.05. Skipping calculation at Locus7465 +WARNING: Locus Locus7466 has MAF < 0.05. Skipping calculation at Locus7466 +WARNING: Locus Locus7467 has MAF < 0.05. Skipping calculation at Locus7467 +WARNING: Locus Locus7470 has MAF < 0.05. Skipping calculation at Locus7470 +WARNING: Locus Locus7471 has MAF < 0.05. Skipping calculation at Locus7471 +WARNING: Locus Locus2241 has MAF < 0.05. Skipping calculation at Locus2241 +WARNING: Locus Locus2242 has MAF < 0.05. Skipping calculation at Locus2242 +WARNING: Locus Locus7476 has MAF < 0.05. Skipping calculation at Locus7476 +WARNING: Locus Locus7478 has MAF < 0.05. Skipping calculation at Locus7478 +WARNING: Locus Locus2244 has MAF < 0.05. Skipping calculation at Locus2244 +WARNING: Locus Locus6534 has MAF < 0.05. Skipping calculation at Locus6534 +WARNING: Locus Locus6535 has MAF < 0.05. Skipping calculation at Locus6535 +WARNING: Locus Locus6536 has MAF < 0.05. Skipping calculation at Locus6536 +WARNING: Locus Locus6537 has MAF < 0.05. Skipping calculation at Locus6537 +WARNING: Locus Locus3029 has MAF < 0.05. Skipping calculation at Locus3029 +WARNING: Locus Locus3030 has MAF < 0.05. Skipping calculation at Locus3030 +WARNING: Locus Locus3031 has MAF < 0.05. Skipping calculation at Locus3031 +WARNING: Locus Locus2246 has MAF < 0.05. Skipping calculation at Locus2246 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7480 +WARNING: Locus Locus7481 has MAF < 0.05. Skipping calculation at Locus7481 +WARNING: Locus Locus6539 has MAF < 0.05. Skipping calculation at Locus6539 +WARNING: Locus Locus2248 has MAF < 0.05. Skipping calculation at Locus2248 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7487 +WARNING: Locus Locus7488 has MAF < 0.05. Skipping calculation at Locus7488 +WARNING: Locus Locus2250 has MAF < 0.05. Skipping calculation at Locus2250 +WARNING: Locus Locus6547 has MAF < 0.05. Skipping calculation at Locus6547 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus7489 +WARNING: Locus Locus2253 has MAF < 0.05. Skipping calculation at Locus2253 +WARNING: Locus Locus6550 has MAF < 0.05. Skipping calculation at Locus6550 +WARNING: Locus Locus2255 has MAF < 0.05. Skipping calculation at Locus2255 +WARNING: Locus Locus6552 has MAF < 0.05. Skipping calculation at Locus6552 +WARNING: Locus Locus2257 has MAF < 0.05. Skipping calculation at Locus2257 +WARNING: Locus Locus6555 has MAF < 0.05. Skipping calculation at Locus6555 +WARNING: Locus Locus6556 has MAF < 0.05. Skipping calculation at Locus6556 +WARNING: Locus Locus3034 has MAF < 0.05. Skipping calculation at Locus3034 +WARNING: Locus Locus3036 has MAF < 0.05. Skipping calculation at Locus3036 +WARNING: Locus Locus3038 has MAF < 0.05. Skipping calculation at Locus3038 +WARNING: Locus Locus2262 has MAF < 0.05. Skipping calculation at Locus2262 +WARNING: Locus Locus2263 has MAF < 0.05. Skipping calculation at Locus2263 +WARNING: Locus Locus3040 has MAF < 0.05. Skipping calculation at Locus3040 +WARNING: Locus Locus3041 has MAF < 0.05. Skipping calculation at Locus3041 +WARNING: Locus Locus3042 has MAF < 0.05. Skipping calculation at Locus3042 +WARNING: Locus Locus3044 has MAF < 0.05. Skipping calculation at Locus3044 +WARNING: Locus Locus3045 has MAF < 0.05. Skipping calculation at Locus3045 +WARNING: Locus Locus3046 has MAF < 0.05. Skipping calculation at Locus3046 +WARNING: Locus Locus2267 has MAF < 0.05. Skipping calculation at Locus2267 +WARNING: Locus Locus6564 has MAF < 0.05. Skipping calculation at Locus6564 +WARNING: Locus Locus6566 has MAF < 0.05. Skipping calculation at Locus6566 +WARNING: Locus Locus2270 has MAF < 0.05. Skipping calculation at Locus2270 +WARNING: Locus Locus6571 has MAF < 0.05. Skipping calculation at Locus6571 +WARNING: Locus Locus6572 has MAF < 0.05. Skipping calculation at Locus6572 +WARNING: Locus Locus2275 has MAF < 0.05. Skipping calculation at Locus2275 +WARNING: Locus Locus2276 has MAF < 0.05. Skipping calculation at Locus2276 +WARNING: Locus Locus6574 has MAF < 0.05. Skipping calculation at Locus6574 +WARNING: Locus Locus3050 has MAF < 0.05. Skipping calculation at Locus3050 +WARNING: Locus Locus3051 has MAF < 0.05. Skipping calculation at Locus3051 +WARNING: Locus Locus2278 has MAF < 0.05. Skipping calculation at Locus2278 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus6576 +WARNING: Locus Locus6578 has MAF < 0.05. Skipping calculation at Locus6578 +WARNING: Locus Locus2282 has MAF < 0.05. Skipping calculation at Locus2282 +WARNING: Locus Locus2283 has MAF < 0.05. Skipping calculation at Locus2283 +WARNING: Locus Locus3056 has MAF < 0.05. Skipping calculation at Locus3056 +WARNING: Locus Locus3057 has MAF < 0.05. Skipping calculation at Locus3057 +WARNING: Locus Locus3059 has MAF < 0.05. Skipping calculation at Locus3059 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus6581 +WARNING: Locus Locus3066 has MAF < 0.05. Skipping calculation at Locus3066 +WARNING: Locus Locus2291 has MAF < 0.05. Skipping calculation at Locus2291 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus6590 +WARNING: Locus Locus3073 has MAF < 0.05. Skipping calculation at Locus3073 +WARNING: Locus Locus3074 has MAF < 0.05. Skipping calculation at Locus3074 +WARNING: Locus Locus3076 has MAF < 0.05. Skipping calculation at Locus3076 +WARNING: Locus Locus3078 has MAF < 0.05. Skipping calculation at Locus3078 +WARNING: Locus Locus6601 has MAF < 0.05. Skipping calculation at Locus6601 +WARNING: Locus Locus2302 has MAF < 0.05. Skipping calculation at Locus2302 +WARNING: Locus Locus6609 has MAF < 0.05. Skipping calculation at Locus6609 +WARNING: Locus Locus6610 has MAF < 0.05. Skipping calculation at Locus6610 +WARNING: Locus Locus2308 has MAF < 0.05. Skipping calculation at Locus2308 +WARNING: Locus Locus2309 has MAF < 0.05. Skipping calculation at Locus2309 +WARNING: Locus Locus3082 has MAF < 0.05. Skipping calculation at Locus3082 +WARNING: Locus Locus3083 has MAF < 0.05. Skipping calculation at Locus3083 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus6613 +WARNING: Locus Locus6614 has MAF < 0.05. Skipping calculation at Locus6614 +WARNING: Locus Locus6615 has MAF < 0.05. Skipping calculation at Locus6615 +WARNING: Locus Locus2313 has MAF < 0.05. Skipping calculation at Locus2313 +WARNING: Locus Locus2316 has MAF < 0.05. Skipping calculation at Locus2316 +WARNING: Locus Locus3089 has MAF < 0.05. Skipping calculation at Locus3089 +WARNING: Locus Locus3091 has MAF < 0.05. Skipping calculation at Locus3091 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus6618 +WARNING: Locus Locus6619 has MAF < 0.05. Skipping calculation at Locus6619 +WARNING: Locus Locus3094 has MAF < 0.05. Skipping calculation at Locus3094 +WARNING: Locus Locus3097 has MAF < 0.05. Skipping calculation at Locus3097 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus6622 +WARNING: Locus Locus6623 has MAF < 0.05. Skipping calculation at Locus6623 +WARNING: Locus Locus6628 has MAF < 0.05. Skipping calculation at Locus6628 +WARNING: Locus Locus3102 has MAF < 0.05. Skipping calculation at Locus3102 +WARNING: Locus Locus2322 has MAF < 0.05. Skipping calculation at Locus2322 +WARNING: Locus Locus2323 has MAF < 0.05. Skipping calculation at Locus2323 +WARNING: Locus Locus2325 has MAF < 0.05. Skipping calculation at Locus2325 +WARNING: Locus Locus2326 has MAF < 0.05. Skipping calculation at Locus2326 +WARNING: Locus Locus6637 has MAF < 0.05. Skipping calculation at Locus6637 +WARNING: Locus Locus6644 has MAF < 0.05. Skipping calculation at Locus6644 +WARNING: Locus Locus3114 has MAF < 0.05. Skipping calculation at Locus3114 +WARNING: Locus Locus6647 has MAF < 0.05. Skipping calculation at Locus6647 +WARNING: Locus Locus3116 has MAF < 0.05. Skipping calculation at Locus3116 +WARNING: Locus Locus2335 has MAF < 0.05. Skipping calculation at Locus2335 +WARNING: Locus Locus3118 has MAF < 0.05. Skipping calculation at Locus3118 +WARNING: Reached chromosome edge before EHH decayed below 0.05. Skipping calculation at Locus6650 +WARNING: Locus Locus2341 has MAF < 0.05. Skipping calculation at Locus2341 +WARNING: Locus Locus2345 has MAF < 0.05. Skipping calculation at Locus2345 +WARNING: Locus Locus2347 has MAF < 0.05. Skipping calculation at Locus2347 +WARNING: Locus Locus6654 has MAF < 0.05. Skipping calculation at Locus6654 +WARNING: Locus Locus6656 has MAF < 0.05. Skipping calculation at Locus6656 +WARNING: Locus Locus2350 has MAF < 0.05. Skipping calculation at Locus2350 +WARNING: Locus Locus2354 has MAF < 0.05. Skipping calculation at Locus2354 +WARNING: Locus Locus2355 has MAF < 0.05. Skipping calculation at Locus2355 +WARNING: Locus Locus2357 has MAF < 0.05. Skipping calculation at Locus2357 +WARNING: Locus Locus2359 has MAF < 0.05. Skipping calculation at Locus2359 +WARNING: Locus Locus2361 has MAF < 0.05. Skipping calculation at Locus2361 +WARNING: Locus Locus2363 has MAF < 0.05. Skipping calculation at Locus2363 +WARNING: Locus Locus2374 has MAF < 0.05. Skipping calculation at Locus2374 +WARNING: Locus Locus2376 has MAF < 0.05. Skipping calculation at Locus2376 +WARNING: Locus Locus2380 has MAF < 0.05. Skipping calculation at Locus2380 +WARNING: Locus Locus2381 has MAF < 0.05. Skipping calculation at Locus2381 +WARNING: Locus Locus3139 has MAF < 0.05. Skipping calculation at Locus3139 +WARNING: Locus Locus2385 has MAF < 0.05. Skipping calculation at Locus2385 +WARNING: Locus Locus2386 has MAF < 0.05. Skipping calculation at Locus2386 +WARNING: Locus Locus2395 has MAF < 0.05. Skipping calculation at Locus2395 +WARNING: Locus Locus3146 has MAF < 0.05. Skipping calculation at Locus3146 +WARNING: Locus Locus2399 has MAF < 0.05. Skipping calculation at Locus2399 +WARNING: Locus Locus3149 has MAF < 0.05. Skipping calculation at Locus3149 +WARNING: Locus Locus2404 has MAF < 0.05. Skipping calculation at Locus2404 +WARNING: Locus Locus2408 has MAF < 0.05. Skipping calculation at Locus2408 +WARNING: Locus Locus3154 has MAF < 0.05. Skipping calculation at Locus3154 +WARNING: Locus Locus2410 has MAF < 0.05. Skipping calculation at Locus2410 +WARNING: Locus Locus2411 has MAF < 0.05. Skipping calculation at Locus2411 +WARNING: Locus Locus3160 has MAF < 0.05. Skipping calculation at Locus3160 +WARNING: Locus Locus3166 has MAF < 0.05. Skipping calculation at Locus3166 +WARNING: Locus Locus2417 has MAF < 0.05. Skipping calculation at Locus2417 +WARNING: Locus Locus2418 has MAF < 0.05. Skipping calculation at Locus2418 +WARNING: Locus Locus3169 has MAF < 0.05. Skipping calculation at Locus3169 +WARNING: Locus Locus3171 has MAF < 0.05. Skipping calculation at Locus3171 +WARNING: Locus Locus3178 has MAF < 0.05. Skipping calculation at Locus3178 +WARNING: Locus Locus2425 has MAF < 0.05. Skipping calculation at Locus2425 +WARNING: Locus Locus2427 has MAF < 0.05. Skipping calculation at Locus2427 +WARNING: Locus Locus3184 has MAF < 0.05. Skipping calculation at Locus3184 +WARNING: Locus Locus2434 has MAF < 0.05. Skipping calculation at Locus2434 +WARNING: Locus Locus3186 has MAF < 0.05. Skipping calculation at Locus3186 +WARNING: Locus Locus3187 has MAF < 0.05. Skipping calculation at Locus3187 +WARNING: Locus Locus2441 has MAF < 0.05. Skipping calculation at Locus2441 +WARNING: Locus Locus3193 has MAF < 0.05. Skipping calculation at Locus3193 +WARNING: Locus Locus2444 has MAF < 0.05. Skipping calculation at Locus2444 +WARNING: Locus Locus2445 has MAF < 0.05. Skipping calculation at Locus2445 +WARNING: Locus Locus2448 has MAF < 0.05. Skipping calculation at Locus2448 +WARNING: Locus Locus2449 has MAF < 0.05. Skipping calculation at Locus2449 +WARNING: Locus Locus2451 has MAF < 0.05. Skipping calculation at Locus2451 +WARNING: Locus Locus3199 has MAF < 0.05. Skipping calculation at Locus3199 +WARNING: Locus Locus3201 has MAF < 0.05. Skipping calculation at Locus3201 +WARNING: Locus Locus3203 has MAF < 0.05. Skipping calculation at Locus3203 +WARNING: Locus Locus3204 has MAF < 0.05. Skipping calculation at Locus3204 +WARNING: Locus Locus3205 has MAF < 0.05. Skipping calculation at Locus3205 +WARNING: Locus Locus3206 has MAF < 0.05. Skipping calculation at Locus3206 +WARNING: Locus Locus3207 has MAF < 0.05. Skipping calculation at Locus3207 +WARNING: Locus Locus2455 has MAF < 0.05. Skipping calculation at Locus2455 +WARNING: Locus Locus3211 has MAF < 0.05. Skipping calculation at Locus3211 +WARNING: Locus Locus3212 has MAF < 0.05. Skipping calculation at Locus3212 +WARNING: Locus Locus3213 has MAF < 0.05. Skipping calculation at Locus3213 +WARNING: Locus Locus2460 has MAF < 0.05. Skipping calculation at Locus2460 +WARNING: Locus Locus2461 has MAF < 0.05. Skipping calculation at Locus2461 +WARNING: Locus Locus2462 has MAF < 0.05. Skipping calculation at Locus2462 +WARNING: Locus Locus3217 has MAF < 0.05. Skipping calculation at Locus3217 +WARNING: Locus Locus3218 has MAF < 0.05. Skipping calculation at Locus3218 +WARNING: Locus Locus3223 has MAF < 0.05. Skipping calculation at Locus3223 +WARNING: Locus Locus3227 has MAF < 0.05. Skipping calculation at Locus3227 +WARNING: Locus Locus3234 has MAF < 0.05. Skipping calculation at Locus3234 +WARNING: Locus Locus3238 has MAF < 0.05. Skipping calculation at Locus3238 +WARNING: Locus Locus2471 has MAF < 0.05. Skipping calculation at Locus2471 +WARNING: Locus Locus2472 has MAF < 0.05. Skipping calculation at Locus2472 +WARNING: Locus Locus2473 has MAF < 0.05. Skipping calculation at Locus2473 +WARNING: Locus Locus2476 has MAF < 0.05. Skipping calculation at Locus2476 +WARNING: Locus Locus3244 has MAF < 0.05. Skipping calculation at Locus3244 +WARNING: Locus Locus2478 has MAF < 0.05. Skipping calculation at Locus2478 +WARNING: Locus Locus2481 has MAF < 0.05. Skipping calculation at Locus2481 +WARNING: Locus Locus2482 has MAF < 0.05. Skipping calculation at Locus2482 +WARNING: Locus Locus2486 has MAF < 0.05. Skipping calculation at Locus2486 +WARNING: Locus Locus2487 has MAF < 0.05. Skipping calculation at Locus2487 +WARNING: Locus Locus3247 has MAF < 0.05. Skipping calculation at Locus3247 +WARNING: Locus Locus2493 has MAF < 0.05. Skipping calculation at Locus2493 +WARNING: Locus Locus2495 has MAF < 0.05. Skipping calculation at Locus2495 +WARNING: Locus Locus2496 has MAF < 0.05. Skipping calculation at Locus2496 +WARNING: Locus Locus3251 has MAF < 0.05. Skipping calculation at Locus3251 +WARNING: Locus Locus3253 has MAF < 0.05. Skipping calculation at Locus3253 +WARNING: Locus Locus3254 has MAF < 0.05. Skipping calculation at Locus3254 +WARNING: Locus Locus3255 has MAF < 0.05. Skipping calculation at Locus3255 +WARNING: Locus Locus3256 has MAF < 0.05. Skipping calculation at Locus3256 +WARNING: Locus Locus3258 has MAF < 0.05. Skipping calculation at Locus3258 +WARNING: Locus Locus3259 has MAF < 0.05. Skipping calculation at Locus3259 +WARNING: Locus Locus3260 has MAF < 0.05. Skipping calculation at Locus3260 +WARNING: Locus Locus3262 has MAF < 0.05. Skipping calculation at Locus3262 +WARNING: Locus Locus3263 has MAF < 0.05. Skipping calculation at Locus3263 +WARNING: Locus Locus3266 has MAF < 0.05. Skipping calculation at Locus3266 +WARNING: Locus Locus3267 has MAF < 0.05. Skipping calculation at Locus3267 +WARNING: Locus Locus3268 has MAF < 0.05. Skipping calculation at Locus3268 +WARNING: Locus Locus3272 has MAF < 0.05. Skipping calculation at Locus3272 +WARNING: Locus Locus3274 has MAF < 0.05. Skipping calculation at Locus3274 +WARNING: Locus Locus3275 has MAF < 0.05. Skipping calculation at Locus3275 +WARNING: Locus Locus3276 has MAF < 0.05. Skipping calculation at Locus3276 +WARNING: Locus Locus3277 has MAF < 0.05. Skipping calculation at Locus3277 +WARNING: Locus Locus3282 has MAF < 0.05. Skipping calculation at Locus3282 +WARNING: Locus Locus3288 has MAF < 0.05. Skipping calculation at Locus3288 +WARNING: Locus Locus3293 has MAF < 0.05. Skipping calculation at Locus3293 +WARNING: Locus Locus3294 has MAF < 0.05. Skipping calculation at Locus3294 +WARNING: Locus Locus3299 has MAF < 0.05. Skipping calculation at Locus3299 +WARNING: Locus Locus3300 has MAF < 0.05. Skipping calculation at Locus3300 +WARNING: Locus Locus3301 has MAF < 0.05. Skipping calculation at Locus3301 +WARNING: Locus Locus3304 has MAF < 0.05. Skipping calculation at Locus3304 +WARNING: Locus Locus3307 has MAF < 0.05. Skipping calculation at Locus3307 +WARNING: Locus Locus3314 has MAF < 0.05. Skipping calculation at Locus3314 +WARNING: Locus Locus3316 has MAF < 0.05. Skipping calculation at Locus3316 diff --git a/example/example.ihs.out b/example/example.ihs.out index 89653dc..d876a4c 100644 --- a/example/example.ihs.out +++ b/example/example.ihs.out @@ -1,141 +1,29 @@ -Locus2 923 0.18 0.0509864 0.00485819 2.35089 -Locus3 2449 0.06 0.0664726 0.00633727 2.35034 -Locus4 2476 0.08 0.0803659 0.00681231 2.46786 -Locus5 4279 0.06 0.0993913 0.00700055 2.65308 -Locus6 4568 0.06 0.604363 0.00680257 4.48687 -Locus8 6199 0.06 0.0993913 0.00708464 2.64114 -Locus9 6234 0.06 0.0993913 0.00708464 2.64114 -Locus10 6392 0.06 0.0993913 0.00708464 2.64114 -Locus11 6855 0.08 0.0227363 0.00658119 1.23975 -Locus12 6890 0.28 0.0299314 0.00590803 1.6226 -Locus13 6921 0.06 0.0993913 0.00607533 2.79483 -Locus15 7147 0.94 0.00633355 0.0993913 -2.7532 -Locus16 7245 0.94 0.00633355 0.0993913 -2.7532 -Locus18 7636 0.3 0.0133065 0.0100077 0.284901 -Locus19 8605 0.12 0.078962 0.0069874 2.42486 -Locus21 8922 0.1 0.11425 0.0067947 2.82225 -Locus25 10908 0.1 0.136955 0.00690769 2.98702 -Locus27 11271 0.28 0.0305488 0.00799635 1.34034 -Locus29 11629 0.12 0.0773866 0.00996819 2.04942 -Locus31 13027 0.06 0.260041 0.0111708 3.14754 -Locus34 17224 0.06 0.0993913 0.0122361 2.09467 -Locus36 19312 0.16 0.0649156 0.0127301 1.62912 -Locus38 20411 0.06 0.143009 0.0109365 2.5708 -Locus39 20890 0.06 0.0993913 0.0112288 2.18058 -Locus40 22125 0.16 0.0303112 0.0120136 0.925483 -Locus41 22129 0.22 0.0393461 0.0112862 1.24882 -Locus44 24890 0.22 0.0393461 0.0114621 1.23335 -Locus45 26983 0.22 0.0393461 0.0114621 1.23335 -Locus46 26992 0.16 0.0303112 0.0100154 1.10739 -Locus47 27337 0.36 0.0248471 0.0100989 0.900312 -Locus48 27976 0.06 0.143009 0.00859962 2.81119 -Locus49 28431 0.38 0.0194351 0.0142611 0.309546 -Locus52 29864 0.64 0.0141953 0.0201218 -0.348888 -Locus53 30159 0.06 0.143009 0.00798999 2.88472 -Locus54 30283 0.36 0.0201218 0.0169478 0.171666 -Locus55 31078 0.18 0.0495162 0.0131004 1.32966 Locus57 32824 0.06 0.0193286 0.0123834 0.44523 -Locus60 35554 0.28 0.0319109 0.0156409 0.713059 -Locus67 40919 0.66 0.0159611 0.0243787 -0.423559 -Locus69 41529 0.08 0.218096 0.0121574 2.887 -Locus71 44036 0.1 0.0154567 0.0140178 0.0977115 -Locus78 47085 0.46 0.0257882 0.017297 0.399381 Locus80 50994 0.06 0.0976381 0.0108407 2.19796 -Locus81 51297 0.54 0.0177314 0.0255336 -0.364659 -Locus84 54318 0.06 0.0993913 0.0119394 2.11922 -Locus88 56720 0.2 0.0445637 0.0132248 1.21483 Locus92 58688 0.06 0.0517748 0.0109509 1.55348 -Locus96 61102 0.38 0.0310396 0.0127668 0.888412 -Locus104 66565 0.26 0.0377157 0.0130586 1.06063 -Locus105 66927 0.26 0.0377157 0.0130586 1.06063 -Locus106 67159 0.26 0.0377157 0.0130586 1.06063 -Locus107 67523 0.74 0.0130586 0.0377157 -1.06063 -Locus108 68248 0.2 0.046506 0.0103447 1.5031 -Locus109 68463 0.1 0.150111 0.0088331 2.83287 -Locus110 69213 0.48 0.019922 0.0155537 0.247523 -Locus111 70771 0.06 0.143009 0.00830009 2.84664 -Locus112 72033 0.06 0.143009 0.00830009 2.84664 -Locus113 72063 0.46 0.018402 0.0179112 0.0270358 -Locus114 72819 0.48 0.020624 0.0145458 0.349153 -Locus116 73956 0.14 0.0971986 0.00723289 2.59812 -Locus117 74123 0.48 0.0172582 0.0140338 0.206823 -Locus120 75992 0.12 0.0330746 0.00796258 1.42401 -Locus121 76627 0.16 0.0686759 0.00645716 2.36421 -Locus123 76795 0.18 0.0951789 0.00870939 2.39136 -Locus127 79907 0.14 0.094002 0.00886106 2.36165 Locus128 80698 0.06 0.0449733 0.00748784 1.79279 -Locus130 81334 0.18 0.0916241 0.00870058 2.3543 -Locus131 81717 0.46 0.016734 0.011513 0.373966 -Locus132 82784 0.16 0.0756356 0.00649207 2.45535 -Locus133 83092 0.16 0.0686759 0.00722183 2.25229 -Locus136 84606 0.12 0.0958708 0.00681749 2.64351 Locus137 85005 0.1 0.0446028 0.0067863 1.88289 -Locus138 85290 0.18 0.0916241 0.00739401 2.51702 -Locus139 85611 0.12 0.0958708 0.00643379 2.70144 Locus140 85924 0.08 0.0708707 0.00687201 2.3334 -Locus141 87444 0.14 0.0625074 0.00836817 2.01085 -Locus142 87589 0.3 0.034495 0.00740081 1.53922 Locus143 87763 0.56 0.0117694 0.0178787 -0.418102 -Locus144 88142 0.12 0.150889 0.00671545 3.11213 -Locus145 88586 0.3 0.034495 0.00881316 1.36457 -Locus146 90458 0.18 0.032227 0.00848908 1.33402 Locus147 90806 0.18 0.0314199 0.00787211 1.38412 -Locus149 91037 0.34 0.0358926 0.00966513 1.31201 -Locus150 91205 0.08 0.211863 0.00771974 3.31216 Locus151 93083 0.14 0.0368053 0.00893044 1.41617 -Locus153 93647 0.34 0.0358926 0.0107492 1.2057 -Locus154 93745 0.1 0.0556137 0.0073337 2.02595 -Locus155 94668 0.1 0.140829 0.00830002 2.83129 -Locus156 95202 0.82 0.00963464 0.0963501 -2.30262 -Locus157 95229 0.16 0.0812735 0.00842795 2.26627 -Locus158 95762 0.14 0.115803 0.00893284 2.56216 -Locus159 96358 0.14 0.115803 0.00893284 2.56216 -Locus160 96478 0.16 0.0812735 0.00807718 2.30878 -Locus161 96545 0.86 0.0123649 0.115803 -2.23703 -Locus162 96911 0.14 0.115803 0.0123649 2.23703 Locus163 97595 0.1 0.0567871 0.0102381 1.7132 -Locus164 98566 0.86 0.0120639 0.115803 -2.26168 -Locus166 100504 0.14 0.115803 0.0124025 2.23399 -Locus167 100812 0.06 0.408519 0.00988304 3.72172 -Locus168 101289 0.62 0.0164629 0.0212463 -0.255072 -Locus169 101598 0.28 0.0399983 0.0126719 1.14945 -Locus170 102206 0.1 0.138317 0.00857422 2.78079 -Locus171 102589 0.14 0.0952517 0.00945416 2.31007 -Locus172 102722 0.28 0.0398729 0.0129272 1.12636 Locus174 103251 0.1 0.0567871 0.00986521 1.75029 -Locus175 103331 0.28 0.0398729 0.0141013 1.03943 -Locus177 103420 0.28 0.0398729 0.0144117 1.01766 -Locus178 104904 0.14 0.0952517 0.00975137 2.27912 -Locus179 105032 0.66 0.0155358 0.0284593 -0.605328 Locus180 106107 0.1 0.0567871 0.00996407 1.74032 Locus181 106131 0.1 0.0567871 0.00996407 1.74032 Locus182 106132 0.1 0.0567871 0.00996407 1.74032 -Locus183 106631 0.3 0.0352506 0.0144264 0.893426 -Locus184 106760 0.3 0.0352506 0.0144264 0.893426 -Locus185 107332 0.1 0.138317 0.0104834 2.57975 -Locus186 108032 0.1 0.267265 0.0101787 3.26794 Locus188 108585 0.3 0.0173648 0.0150461 0.143324 -Locus189 108595 0.1 0.156399 0.0103005 2.72022 -Locus190 110597 0.1 0.156399 0.0103005 2.72022 Locus191 110837 0.42 0.0312676 0.0093524 1.20695 Locus192 110962 0.06 0.0751624 0.00843281 2.18752 Locus193 111206 0.3 0.0198165 0.0136949 0.369492 -Locus194 111328 0.06 0.604363 0.00881105 4.22817 -Locus195 111763 0.12 0.119686 0.00997222 2.48507 Locus196 113832 0.4 0.0173028 0.0182561 -0.0536312 Locus198 114426 0.6 0.01775 0.0173028 0.0255211 Locus199 115777 0.44 0.0281385 0.0121213 0.842174 -Locus200 116991 0.72 0.0155886 0.0358277 -0.832181 Locus201 117099 0.08 0.0673151 0.0103121 1.87607 -Locus202 117114 0.28 0.0343741 0.0155886 0.790762 -Locus203 117667 0.72 0.0155886 0.0343741 -0.790762 -Locus204 118038 0.06 0.291492 0.00909736 3.46703 -Locus205 118055 0.28 0.0343741 0.0148154 0.841638 Locus208 119263 0.18 0.0393619 0.0130515 1.10389 Locus209 119585 0.82 0.0130515 0.0393619 -1.10389 Locus211 121218 0.08 0.0673151 0.0110673 1.80539 Locus212 121358 0.82 0.0132599 0.0428882 -1.17385 -Locus213 123562 0.14 0.0844273 0.010821 2.0544 Locus215 124534 0.22 0.0342499 0.0115649 1.08571 Locus217 125130 0.22 0.0319714 0.0115649 1.01687 Locus218 125159 0.64 0.0148979 0.0217773 -0.379644 @@ -149,28 +37,15 @@ Locus230 131982 0.2 0.0374124 0.00994618 1.32481 Locus231 132647 0.44 0.0262824 0.0101524 0.951189 Locus232 132892 0.44 0.0262824 0.0101524 0.951189 Locus233 132949 0.14 0.0385275 0.00851804 1.50919 -Locus234 133063 0.12 0.201042 0.00676252 3.39212 -Locus235 133227 0.1 0.156399 0.00651884 3.17772 Locus236 133348 0.44 0.0243953 0.00943459 0.950008 Locus237 133668 0.44 0.0243953 0.00943459 0.950008 Locus238 133761 0.14 0.0385275 0.00844955 1.51726 -Locus239 134715 0.74 0.0111822 0.0318779 -1.04759 -Locus240 135138 0.12 0.201042 0.00749319 3.28952 Locus241 135157 0.32 0.0372251 0.00822195 1.51018 -Locus242 135701 0.12 0.201042 0.00877961 3.13108 -Locus243 136248 0.1 0.156399 0.00840243 2.92389 -Locus244 136453 0.12 0.201042 0.00852303 3.16074 -Locus245 136787 0.1 0.156399 0.00949598 2.80155 Locus246 137968 0.08 0.0642022 0.0098023 1.87942 Locus247 139879 0.08 0.0350331 0.00955969 1.29874 -Locus249 140617 0.12 0.119686 0.00908671 2.57806 -Locus251 141556 0.24 0.0418767 0.0106962 1.36484 Locus252 141970 0.42 0.0251942 0.00852964 1.08307 Locus253 142181 0.14 0.0395118 0.00868 1.51558 Locus254 142725 0.62 0.0160723 0.015855 0.0136165 -Locus255 144326 0.12 0.119686 0.00853394 2.64082 -Locus257 146686 0.24 0.0418767 0.0114313 1.29838 -Locus258 146692 0.06 0.291492 0.00764502 3.64096 Locus259 146905 0.12 0.0417402 0.00828446 1.61708 Locus260 146983 0.62 0.0171523 0.0165281 0.0370659 Locus261 147650 0.38 0.0165281 0.0171523 -0.0370659 @@ -187,9 +62,7 @@ Locus271 151403 0.42 0.0161779 0.0164102 -0.0142567 Locus272 152441 0.06 0.0561942 0.00723165 2.05035 Locus275 153366 0.3 0.0169548 0.0109045 0.441377 Locus276 153506 0.38 0.0249327 0.00750095 1.20115 -Locus277 153576 0.12 0.0981734 0.00554036 2.87468 Locus278 153756 0.32 0.0161212 0.00877424 0.608318 -Locus279 154838 0.1 0.14282 0.00592698 3.18207 Locus280 154913 0.4 0.0137584 0.0124937 0.0964233 Locus282 155192 0.6 0.01269 0.0137584 -0.0808378 Locus283 155377 0.18 0.0245878 0.00810531 1.10973 @@ -197,78 +70,45 @@ Locus285 157285 0.52 0.0108657 0.0178978 -0.499067 Locus286 157578 0.48 0.0178978 0.0108657 0.499067 Locus287 157611 0.08 0.0608575 0.0071409 2.1427 Locus291 160367 0.06 0.0393061 0.00695832 1.73144 -Locus292 160499 0.16 0.0796627 0.00854136 2.23288 -Locus295 162055 0.14 0.110483 0.00604605 2.90545 -Locus296 162703 0.16 0.0513611 0.00768411 1.89973 Locus298 163094 0.12 0.0438253 0.00644168 1.91742 -Locus299 164476 0.16 0.0513611 0.00755153 1.91713 Locus300 164482 0.48 0.0149158 0.00938467 0.463345 -Locus301 164672 0.24 0.0538378 0.00485458 2.40605 -Locus302 164812 0.16 0.0513611 0.00665058 2.04418 -Locus303 164826 0.16 0.0513611 0.00665058 2.04418 -Locus304 165741 0.06 0.420705 0.00549985 4.33721 +Locus304 165741 0.06 0.350859 0.00549985 4.15566 Locus306 166305 0.18 0.0219855 0.00845487 0.95564 -Locus307 167099 0.14 0.128228 0.00610456 3.04478 Locus308 167112 0.22 0.0331327 0.00884682 1.32046 -Locus310 168009 0.16 0.0512439 0.0087612 1.76626 -Locus311 168497 0.16 0.0512439 0.0087612 1.76626 -Locus312 168813 0.84 0.0087612 0.0512439 -1.76626 -Locus313 169227 0.84 0.0087612 0.0512439 -1.76626 -Locus314 169592 0.84 0.0087612 0.0512439 -1.76626 -Locus315 169821 0.7 0.0118116 0.0332076 -1.0337 -Locus317 170043 0.3 0.0327864 0.0118116 1.02093 Locus318 170108 0.08 0.0509692 0.00726497 1.94816 -Locus319 171491 0.28 0.0373888 0.0118547 1.14865 -Locus320 173873 0.24 0.0576945 0.00831848 1.93668 Locus321 174771 0.54 0.0136915 0.0174176 -0.240707 -Locus323 175830 0.24 0.0576945 0.00753574 2.0355 Locus324 175835 0.44 0.0197243 0.0124794 0.457771 Locus326 176498 0.08 0.0875068 0.00649781 2.60025 -Locus327 176529 0.24 0.0576945 0.00729583 2.06786 Locus328 177806 0.52 0.0157115 0.0139133 0.121547 Locus329 178341 0.38 0.018101 0.012022 0.40923 Locus330 178963 0.38 0.018101 0.012022 0.40923 -Locus331 179033 0.1 0.0949458 0.00696483 2.61243 -Locus332 179214 0.08 0.156367 0.00666677 3.15507 -Locus333 179252 0.1 0.0950706 0.00696483 2.61375 Locus334 179516 0.52 0.0157115 0.0131855 0.175271 Locus336 180292 0.08 0.0875068 0.00815611 2.37295 -Locus339 182229 0.16 0.111919 0.00810556 2.62522 -Locus340 183201 0.08 0.134784 0.00920571 2.68385 Locus341 183360 0.42 0.0132025 0.0149325 -0.123134 Locus342 183479 0.32 0.0166372 0.0114272 0.375642 Locus343 183513 0.42 0.0132377 0.0149325 -0.120468 -Locus344 183641 0.08 0.134784 0.00733804 2.9106 Locus345 183908 0.58 0.0155162 0.0132377 0.158812 -Locus346 184636 0.3 0.0528148 0.00674602 2.05784 -Locus347 184686 0.3 0.0528148 0.00674602 2.05784 Locus348 184970 0.42 0.0132377 0.0145629 -0.0954042 Locus349 184977 0.58 0.0145629 0.0132377 0.0954042 -Locus350 185373 0.3 0.0528148 0.00728198 1.98139 Locus352 186944 0.4 0.0136924 0.0165579 -0.190018 Locus354 187863 0.4 0.0126263 0.0165579 -0.27108 Locus356 188916 0.4 0.0126263 0.016253 -0.252498 -Locus357 189361 0.1 0.155169 0.00798989 2.96634 -Locus358 189743 0.18 0.0669881 0.0093125 1.97316 Locus359 190901 0.34 0.0136227 0.012075 0.120606 Locus361 191810 0.2 0.0268457 0.00848335 1.152 Locus362 192653 0.32 0.0483635 0.00670029 1.97659 Locus363 193369 0.26 0.0260058 0.00986699 0.969124 Locus364 193422 0.66 0.00845085 0.0448007 -1.66796 Locus366 193835 0.2 0.02847 0.0105001 0.997465 -Locus369 194744 0.1 0.147774 0.00931861 2.76367 Locus370 195202 0.4 0.0316835 0.0149067 0.753982 Locus371 196026 0.6 0.0149067 0.0316835 -0.753982 Locus372 196952 0.6 0.0149067 0.0316835 -0.753982 Locus374 198917 0.38 0.033161 0.0155483 0.75742 -Locus377 200569 0.06 0.286109 0.0117449 3.19296 Locus379 203872 0.06 0.0688617 0.0121108 1.738 Locus382 208000 0.4 0.0286405 0.0155326 0.611879 Locus384 209472 0.48 0.0188702 0.0153518 0.206356 Locus385 210393 0.06 0.0466665 0.0104016 1.50106 -Locus387 211220 0.06 0.413504 0.0108798 3.63776 +Locus387 211220 0.06 0.358698 0.0108798 3.49557 Locus389 211765 0.14 0.0623133 0.0113439 1.70349 -Locus390 212006 0.06 0.604363 0.00900674 4.2062 Locus392 213938 0.2 0.035409 0.0115758 1.11805 Locus393 214072 0.2 0.035409 0.0115758 1.11805 Locus394 214894 0.08 0.0655899 0.0083196 2.06481 @@ -291,36 +131,25 @@ Locus413 221565 0.14 0.0580031 0.00905452 1.85723 Locus414 221568 0.14 0.0165647 0.00812674 0.712114 Locus415 221843 0.14 0.0580031 0.00820337 1.95595 Locus416 222782 0.14 0.0580031 0.00820337 1.95595 -Locus417 222869 0.08 0.163014 0.00709531 3.1344 Locus418 223241 0.86 0.00764337 0.0580031 -2.02666 Locus419 223377 0.14 0.0580031 0.00764337 2.02666 Locus420 223381 0.14 0.0647642 0.00762129 2.13981 -Locus422 223857 0.24 0.0421229 0.00765638 1.70505 Locus423 224161 0.86 0.00563419 0.0580031 -2.33164 Locus425 224583 0.14 0.0647642 0.00641752 2.31172 Locus426 225849 0.52 0.0124115 0.0117634 0.0536289 Locus427 225911 0.48 0.0117634 0.0124115 -0.0536289 Locus428 225970 0.52 0.0124115 0.0117634 0.0536289 -Locus429 226108 0.08 0.134784 0.0054133 3.21481 Locus431 226630 0.48 0.0124493 0.0117683 0.0562558 -Locus433 227301 0.08 0.134784 0.00745477 2.89482 Locus434 228159 0.2 0.0373067 0.00887508 1.43592 Locus437 229860 0.1 0.0409883 0.00980149 1.43075 -Locus438 229872 0.06 0.37836 0.009468 3.68793 Locus441 231216 0.08 0.0611685 0.0104353 1.76843 Locus443 233469 0.12 0.0394375 0.0111386 1.2643 -Locus444 234104 0.18 0.101284 0.00993995 2.32137 -Locus446 236102 0.08 0.134784 0.00963882 2.63787 Locus447 237338 0.12 0.0394375 0.0101896 1.35335 -Locus448 237480 0.08 0.134784 0.00909184 2.6963 -Locus449 237538 0.06 0.604363 0.00787419 4.34059 Locus450 237969 0.88 0.00993512 0.0394375 -1.37864 Locus451 238330 0.88 0.00993512 0.0394375 -1.37864 -Locus452 238768 0.08 0.134784 0.00888409 2.71941 Locus453 239640 0.8 0.0123491 0.0259502 -0.74259 Locus454 239950 0.8 0.0123491 0.0259502 -0.74259 Locus455 240376 0.8 0.0123491 0.0259502 -0.74259 -Locus456 240413 0.08 0.163014 0.00777517 3.0429 Locus457 240586 0.2 0.0267449 0.00861963 1.1323 Locus458 241279 0.88 0.00757796 0.0394375 -1.64947 Locus459 241291 0.88 0.00757796 0.0394375 -1.64947 @@ -340,7 +169,6 @@ Locus472 244952 0.64 0.00856348 0.0262343 -1.11956 Locus473 245105 0.36 0.0262343 0.00856348 1.11956 Locus475 246027 0.64 0.0086008 0.0262343 -1.11521 Locus476 246106 0.32 0.0322708 0.00709513 1.51475 -Locus477 246377 0.08 0.163014 0.00599222 3.30337 Locus478 246606 0.64 0.0086008 0.0250684 -1.06975 Locus480 247418 0.64 0.00849044 0.0250684 -1.08267 Locus483 247882 0.28 0.0205422 0.0069103 1.08947 @@ -348,31 +176,25 @@ Locus484 248478 0.06 0.163655 0.00596737 3.31145 Locus485 248604 0.1 0.0351124 0.00660058 1.6714 Locus486 248696 0.32 0.0284117 0.00775806 1.29807 Locus487 248826 0.1 0.0351124 0.00658299 1.67406 -Locus489 249275 0.18 0.101284 0.00625547 2.78447 Locus490 249775 0.1 0.0351124 0.00722788 1.58061 Locus491 249803 0.32 0.0317485 0.00887558 1.27454 Locus499 253997 0.44 0.0245811 0.0121753 0.702568 Locus501 254741 0.06 0.163655 0.00895212 2.90587 Locus503 255292 0.08 0.0504962 0.00981163 1.63833 Locus504 255872 0.44 0.0259244 0.0122726 0.747816 -Locus505 256324 0.08 0.305159 0.0115809 3.27147 Locus506 256402 0.2 0.0211812 0.0162717 0.263686 Locus510 260304 0.62 0.0225751 0.0296201 -0.271603 Locus511 262233 0.6 0.0237831 0.0283098 -0.174232 -Locus512 264753 0.16 0.107757 0.0160944 1.90141 Locus513 268289 0.36 0.0408477 0.0221969 0.609898 Locus515 269562 0.08 0.0571226 0.014001 1.40607 Locus516 270137 0.36 0.0408477 0.0232112 0.565215 Locus517 271828 0.32 0.0478895 0.0212077 0.814532 Locus518 272610 0.34 0.0424356 0.0224474 0.63681 -Locus520 273348 0.06 0.284957 0.0133489 3.0609 Locus521 274152 0.32 0.0478895 0.0200772 0.869309 Locus522 274389 0.68 0.0200772 0.0478895 -0.869309 Locus525 275612 0.64 0.0227193 0.0375763 -0.503157 Locus527 277349 0.32 0.0478895 0.0208681 0.830672 -Locus528 278631 0.08 0.222375 0.0172843 2.55457 Locus531 281748 0.08 0.147355 0.018297 2.08611 -Locus534 284281 0.06 0.284957 0.0166206 2.8417 Locus536 286131 0.44 0.0399881 0.0190797 0.739956 Locus537 287555 0.18 0.0518104 0.0221097 0.851575 Locus541 293815 0.92 0.0195832 0.0566418 -1.06207 @@ -385,17 +207,13 @@ Locus548 299340 0.14 0.0305783 0.0218717 0.335097 Locus549 301174 0.14 0.0305783 0.0218717 0.335097 Locus550 301222 0.06 0.0744881 0.0157705 1.55249 Locus551 301520 0.06 0.0877062 0.0172781 1.62455 -Locus553 301907 0.08 0.179074 0.0152122 2.4657 Locus554 302465 0.18 0.0375777 0.0212627 0.569459 Locus556 303057 0.82 0.0209037 0.0375777 -0.586486 Locus557 303242 0.18 0.0375777 0.0209037 0.586486 -Locus561 308270 0.06 0.284957 0.0167023 2.83679 Locus562 308688 0.16 0.0726241 0.0165575 1.47846 Locus564 311176 0.56 0.0291184 0.0145858 0.691322 Locus565 311517 0.2 0.0401992 0.0194968 0.723596 -Locus567 313284 0.08 0.179074 0.0157801 2.42905 Locus568 313737 0.08 0.0941646 0.0157193 1.79015 -Locus569 314333 0.12 0.154305 0.0169516 2.20857 Locus573 316006 0.2 0.0489783 0.0203398 0.878798 Locus575 318213 0.08 0.130271 0.0196246 1.89284 Locus576 319345 0.18 0.0593824 0.021885 0.998198 @@ -404,7 +222,6 @@ Locus580 323470 0.14 0.0457296 0.0223391 0.716407 Locus589 331513 0.14 0.0529698 0.0241538 0.78528 Locus591 332975 0.12 0.0962248 0.0208756 1.52811 Locus593 334241 0.22 0.0415444 0.0236568 0.563112 -Locus595 337028 0.1 0.216976 0.0190673 2.43181 Locus598 339702 0.12 0.0962248 0.0208284 1.53037 Locus599 339733 0.12 0.0962248 0.0208284 1.53037 Locus601 339946 0.12 0.0773987 0.0200819 1.34915 @@ -414,40 +231,27 @@ Locus607 344586 0.88 0.0257774 0.0926444 -1.27927 Locus609 347032 0.12 0.0926444 0.0257321 1.28103 Locus611 351273 0.66 0.0259542 0.0447873 -0.545589 Locus612 354695 0.06 0.0383118 0.0178903 0.761499 -Locus613 354951 0.2 0.127818 0.0210856 1.80202 Locus615 357397 0.64 0.0258373 0.0361284 -0.33526 Locus616 357751 0.86 0.0196491 0.0567914 -1.06136 Locus618 359712 0.64 0.0263767 0.0364495 -0.323446 -Locus621 361108 0.22 0.108329 0.0183899 1.77337 Locus624 362782 0.12 0.0892906 0.0207392 1.45987 Locus626 364226 0.14 0.067194 0.0193521 1.24478 Locus630 366252 0.06 0.0689549 0.0161551 1.45122 -Locus631 366797 0.14 0.133364 0.0169342 2.06375 -Locus632 368766 0.16 0.101296 0.0176809 1.74556 Locus633 368800 0.62 0.0231039 0.0217248 0.0615477 -Locus635 370337 0.16 0.101296 0.0151568 1.8996 -Locus636 371635 0.14 0.132936 0.0143397 2.22684 -Locus639 373067 0.1 0.183323 0.0115414 2.76531 Locus641 374096 0.22 0.0341722 0.0141768 0.879806 Locus643 377003 0.6 0.0189394 0.021334 -0.119059 Locus644 377057 0.08 0.133202 0.00989284 2.60005 Locus648 380460 0.06 0.138947 0.00833926 2.81312 Locus651 381564 0.58 0.0114376 0.0210783 -0.611337 -Locus652 381785 0.06 0.252152 0.00736962 3.53267 -Locus653 381835 0.14 0.135349 0.0085291 2.76437 Locus655 382870 0.08 0.22712 0.00823148 3.31751 Locus661 386720 0.6 0.014741 0.0227115 -0.432241 -Locus662 387374 0.06 0.252152 0.0102832 3.19952 Locus664 388075 0.12 0.0955476 0.011502 2.1171 Locus666 389747 0.84 0.0128995 0.0627868 -1.58256 -Locus668 391205 0.06 0.252152 0.0108339 3.14735 Locus670 391797 0.84 0.0131275 0.0632193 -1.5719 Locus671 392966 0.54 0.0248575 0.0119342 0.733753 -Locus672 393452 0.06 0.430515 0.009865 3.77599 Locus673 393829 0.1 0.140547 0.0105854 2.58606 Locus674 393996 0.26 0.0283182 0.016425 0.544702 Locus675 395186 0.08 0.176116 0.0130937 2.59901 -Locus679 399628 0.84 0.0151337 0.103567 -1.9233 Locus684 402045 0.1 0.140547 0.0133314 2.35542 Locus685 402752 0.08 0.22712 0.0127813 2.8775 Locus686 402831 0.06 0.0391559 0.0124885 1.14274 @@ -455,33 +259,21 @@ Locus688 403650 0.06 0.0391559 0.0126382 1.13083 Locus689 403753 0.06 0.0391559 0.0126382 1.13083 Locus690 404527 0.74 0.0172031 0.0322805 -0.629372 Locus691 404895 0.08 0.111191 0.0104974 2.36013 -Locus692 405592 0.06 0.43205 0.010287 3.73766 -Locus694 406303 0.2 0.0790266 0.0134153 1.77339 Locus695 406598 0.06 0.0391559 0.0107002 1.29729 Locus696 407030 0.1 0.145254 0.0117108 2.51797 -Locus697 407183 0.14 0.130931 0.0131406 2.29896 Locus698 407641 0.24 0.0333166 0.0140889 0.860665 -Locus701 411238 0.84 0.0144798 0.1097 -2.025 Locus702 412262 0.1 0.145254 0.0122474 2.47317 -Locus703 412536 0.16 0.1097 0.0135878 2.08858 Locus705 412781 0.1 0.145254 0.0121797 2.47871 -Locus707 414020 0.16 0.106295 0.0142767 2.00759 Locus708 414544 0.06 0.233069 0.0110833 3.0459 -Locus710 414746 0.16 0.106295 0.0139363 2.03172 -Locus712 415243 0.84 0.0137994 0.106295 -2.04159 -Locus713 415597 0.16 0.106295 0.0137994 2.04159 Locus715 417095 0.38 0.0367769 0.00957106 1.34613 -Locus717 418357 0.16 0.106295 0.0124923 2.14111 Locus721 420277 0.08 0.167599 0.0111822 2.70726 Locus722 421485 0.24 0.0423394 0.0146147 1.06369 -Locus723 421729 0.12 0.187511 0.0115569 2.78655 Locus727 423654 0.12 0.0252932 0.0113544 0.800932 Locus728 424012 0.32 0.0268184 0.0144787 0.61641 Locus729 424250 0.32 0.0268184 0.0144787 0.61641 Locus731 425021 0.06 0.233069 0.0100033 3.14842 Locus733 427671 0.08 0.0287967 0.0102944 1.02866 Locus734 428051 0.46 0.0227866 0.0139998 0.487129 -Locus738 430531 0.12 0.187511 0.011515 2.79019 Locus739 433826 0.36 0.0241177 0.0154699 0.44405 Locus740 434409 0.92 0.0109259 0.0794311 -1.98376 Locus747 437676 0.16 0.0362241 0.0121999 1.08829 @@ -523,22 +315,9 @@ Locus814 489936 0.12 0.0600425 0.0199099 1.10384 Locus815 493139 0.88 0.0199099 0.0600425 -1.10384 Locus816 493190 0.06 0.310844 0.0179846 2.84977 Locus817 495096 0.06 0.0792218 0.017601 1.50429 -Locus818 496324 0.18 0.0876145 0.0200402 1.47521 Locus819 496611 0.06 0.0355314 0.01545 0.832808 -Locus821 496930 0.82 0.0196957 0.0807723 -1.41123 -Locus822 497394 0.82 0.0196957 0.0807723 -1.41123 -Locus824 497818 0.82 0.0198239 0.0807723 -1.40475 -Locus825 497826 0.82 0.0198239 0.0807723 -1.40475 -Locus826 498360 0.18 0.0807723 0.0198239 1.40475 -Locus827 498690 0.18 0.0807723 0.0198239 1.40475 -Locus831 500154 0.88 0.0183086 0.171151 -2.23518 Locus832 501133 0.06 0.0183972 0.0167027 0.0966301 -Locus833 502519 0.88 0.0198341 0.171151 -2.15515 Locus834 503566 0.06 0.310844 0.0166869 2.92467 -Locus835 503714 0.88 0.0190234 0.171151 -2.19688 -Locus836 504020 0.1 0.177904 0.0175997 2.31336 -Locus839 505897 0.88 0.0199454 0.171151 -2.14955 -Locus840 507499 0.16 0.0952532 0.0209881 1.51258 Locus841 508971 0.1 0.092942 0.0161271 1.75148 Locus843 509862 0.7 0.0246784 0.021431 0.141091 Locus845 511129 0.1 0.092942 0.015498 1.79126 @@ -570,7 +349,6 @@ Locus887 540724 0.42 0.0282028 0.0117424 0.876212 Locus888 540742 0.12 0.0436667 0.0105944 1.41626 Locus889 543923 0.2 0.0460943 0.0134962 1.22828 Locus891 547002 0.1 0.0669927 0.0119903 1.72048 -Locus892 547087 0.1 0.210459 0.00928141 3.12128 Locus893 548110 0.62 0.0125923 0.0296852 -0.857564 Locus894 548673 0.1 0.0669927 0.0101152 1.89055 Locus895 550341 0.3 0.0318668 0.0119271 0.98275 @@ -606,7 +384,6 @@ Locus944 580412 0.46 0.0252398 0.0137396 0.608144 Locus945 581428 0.32 0.0278607 0.0150783 0.613963 Locus946 581598 0.12 0.192775 0.00931936 3.02943 Locus947 582446 0.68 0.0155992 0.0278607 -0.580001 -Locus948 582599 0.12 0.134398 0.00978394 2.62006 Locus950 584545 0.7 0.0159457 0.0294418 -0.613225 Locus951 584546 0.3 0.0294418 0.0159457 0.613225 Locus953 584869 0.1 0.185249 0.010258 2.89364 @@ -630,7 +407,6 @@ Locus978 603898 0.38 0.0282458 0.011062 0.937429 Locus982 607388 0.18 0.0747782 0.0104797 1.96509 Locus983 608278 0.14 0.0486667 0.00980373 1.60223 Locus985 608630 0.4 0.0271515 0.0126347 0.764989 -Locus987 609693 0.12 0.134398 0.0102015 2.57827 Locus989 610411 0.14 0.0701696 0.0113132 1.82494 Locus992 612897 0.6 0.0184603 0.0238481 -0.256081 Locus993 614320 0.6 0.0184603 0.0238481 -0.256081 @@ -654,13 +430,11 @@ Locus1019 638058 0.58 0.0233137 0.0223973 0.0400982 Locus1020 638499 0.22 0.0602209 0.0145482 1.42055 Locus1021 638798 0.58 0.022511 0.0223973 0.00506276 Locus1022 640568 0.36 0.0553597 0.0127175 1.47087 -Locus1024 642491 0.12 0.114203 0.0152215 2.01527 Locus1026 644051 0.18 0.0366798 0.0157814 0.843391 Locus1028 645033 0.14 0.102513 0.0134376 2.03194 Locus1029 645448 0.36 0.0179494 0.0249155 -0.327934 Locus1030 646247 0.18 0.0366798 0.0186079 0.678637 Locus1033 648239 0.18 0.0366798 0.0197416 0.619496 -Locus1035 652106 0.06 0.433763 0.0163134 3.28051 Locus1039 655612 0.18 0.0877564 0.017113 1.63473 Locus1040 656010 0.18 0.0877564 0.017113 1.63473 Locus1041 656242 0.46 0.0136149 0.0273451 -0.697371 @@ -692,12 +466,10 @@ Locus1084 687378 0.22 0.0263104 0.0212756 0.212404 Locus1085 687945 0.78 0.0212756 0.0263104 -0.212404 Locus1087 689194 0.06 0.0543463 0.0159112 1.22835 Locus1092 694980 0.08 0.0207219 0.0175024 0.168854 -Locus1093 695464 0.06 0.518893 0.0157231 3.49657 Locus1094 696671 0.22 0.0635592 0.0187364 1.22151 Locus1095 696857 0.22 0.0635592 0.0187364 1.22151 Locus1097 698463 0.08 0.0207219 0.0184633 0.115407 Locus1100 701473 0.08 0.0789889 0.0172747 1.52007 -Locus1101 702040 0.08 0.29117 0.0168065 2.85214 Locus1103 702852 0.2 0.0256367 0.0239863 0.0665435 Locus1105 705375 0.18 0.127025 0.0191403 1.89258 Locus1106 707094 0.22 0.0843945 0.0206563 1.40748 @@ -706,28 +478,22 @@ Locus1108 708594 0.4 0.0287709 0.029346 -0.0197923 Locus1109 709044 0.64 0.0286866 0.033717 -0.161569 Locus1110 709402 0.18 0.127025 0.0180772 1.94973 Locus1111 710094 0.66 0.0284165 0.0395774 -0.331287 -Locus1112 710741 0.06 0.341054 0.0173174 2.98033 Locus1115 712085 0.66 0.0284118 0.0399341 -0.340426 Locus1117 713188 0.66 0.0268706 0.0399341 -0.396199 Locus1118 713886 0.66 0.0268706 0.0399341 -0.396199 Locus1119 714878 0.22 0.0880095 0.0192435 1.52027 -Locus1122 716229 0.1 0.112512 0.0199158 1.73155 Locus1123 716230 0.68 0.028759 0.0436156 -0.416464 Locus1124 717194 0.68 0.028759 0.0436156 -0.416464 Locus1125 719317 0.22 0.0880095 0.022401 1.36834 -Locus1126 719489 0.1 0.112512 0.02011 1.72184 Locus1128 720933 0.28 0.0557638 0.0259349 0.765536 -Locus1129 722723 0.06 0.341054 0.0192786 2.87304 Locus1131 723700 0.68 0.0265225 0.0500994 -0.636017 Locus1132 723864 0.2 0.139252 0.0195548 1.96306 -Locus1134 724922 0.06 0.341054 0.0186119 2.90824 Locus1135 725748 0.08 0.0807469 0.0181069 1.49503 Locus1138 728060 0.08 0.0807469 0.0182373 1.48785 Locus1140 728852 0.6 0.028238 0.0331131 -0.159262 Locus1142 729176 0.24 0.0845159 0.0180308 1.54486 Locus1146 730454 0.66 0.022965 0.0443748 -0.658702 Locus1148 730703 0.08 0.0807469 0.0182768 1.48569 -Locus1149 731110 0.06 0.341054 0.0178548 2.94977 Locus1151 734438 0.08 0.0807469 0.0190934 1.44198 Locus1152 734531 0.08 0.299194 0.0163566 2.90646 Locus1154 735704 0.92 0.0175767 0.0807469 -1.52475 @@ -843,13 +609,12 @@ Locus1316 816458 0.18 0.103623 0.00708595 2.68265 Locus1317 816784 0.18 0.0450259 0.00859361 1.65622 Locus1326 820120 0.76 0.0113723 0.0250162 -0.788347 Locus1327 820221 0.76 0.0113723 0.0250162 -0.788347 -Locus1328 820275 0.12 0.477259 0.00804266 4.0833 +Locus1328 820275 0.12 0.265321 0.00804266 3.49618 Locus1330 821120 0.48 0.00910443 0.0234438 -0.945844 Locus1331 821309 0.26 0.0166227 0.0114014 0.377033 Locus1333 822317 0.54 0.0215354 0.0120152 0.583524 Locus1334 823621 0.06 0.0556008 0.0101548 1.70025 Locus1336 826183 0.14 0.0481668 0.011921 1.39637 -Locus1337 826810 0.1 0.234894 0.00980115 3.17664 Locus1338 828101 0.14 0.0481668 0.0116888 1.41604 Locus1339 828393 0.14 0.0481668 0.0116888 1.41604 Locus1342 829191 0.52 0.0142273 0.0248618 -0.558172 @@ -890,7 +655,7 @@ Locus1384 843670 0.16 0.125354 0.0110034 2.43294 Locus1385 844364 0.24 0.0505874 0.0116626 1.46732 Locus1386 844933 0.36 0.0370183 0.0108383 1.22832 Locus1388 846624 0.36 0.0404465 0.0108383 1.31689 -Locus1389 846797 0.1 0.676609 0.011557 4.0698 +Locus1389 846797 0.1 0.361362 0.011557 3.44259 Locus1390 848338 0.2 0.0695995 0.0137657 1.62058 Locus1391 848933 0.2 0.0695995 0.0137657 1.62058 Locus1392 849196 0.46 0.029832 0.0130307 0.828276 @@ -910,7 +675,7 @@ Locus1412 870288 0.06 0.143931 0.00724206 2.98943 Locus1413 870706 0.38 0.0265381 0.012555 0.74846 Locus1414 871211 0.08 0.377758 0.00882279 3.75692 Locus1416 871661 0.18 0.106391 0.0103879 2.32648 -Locus1418 872374 0.08 0.854128 0.01012 4.43557 +Locus1418 872374 0.08 0.333031 0.01012 3.49372 Locus1419 872756 0.1 0.0901833 0.0101746 2.18195 Locus1421 874956 0.2 0.0953937 0.00921791 2.33686 Locus1422 875333 0.2 0.0953937 0.00921791 2.33686 @@ -949,7 +714,7 @@ Locus1469 900039 0.16 0.0905316 0.0104386 2.16019 Locus1472 901356 0.36 0.0368777 0.010983 1.21126 Locus1473 901589 0.36 0.0368777 0.010983 1.21126 Locus1474 902294 0.36 0.0368777 0.010983 1.21126 -Locus1475 903231 0.06 1.66037 0.00995766 5.11646 +Locus1475 903231 0.06 0.628472 0.00995766 4.14495 Locus1476 903525 0.16 0.0837209 0.0115076 1.98448 Locus1477 904302 0.12 0.0393091 0.011218 1.25394 Locus1478 906219 0.12 0.0659767 0.0111578 1.77717 @@ -968,7 +733,7 @@ Locus1496 911306 0.38 0.0331589 0.0173751 0.646272 Locus1498 911615 0.62 0.0173751 0.0332933 -0.650317 Locus1502 917668 0.9 0.0176861 0.073556 -1.42527 Locus1503 918323 0.1 0.073556 0.0176861 1.42527 -Locus1505 920044 0.12 0.402713 0.0163906 3.20151 +Locus1505 920044 0.12 0.197429 0.0163906 2.48867 Locus1506 920898 0.9 0.0160149 0.073556 -1.52452 Locus1507 921387 0.62 0.0257118 0.0171991 0.402095 Locus1509 922874 0.56 0.0232093 0.021765 0.0642496 @@ -976,15 +741,13 @@ Locus1510 923022 0.42 0.0374607 0.0129867 1.05937 Locus1511 924210 0.14 0.0591452 0.0137557 1.45854 Locus1512 924335 0.14 0.0591452 0.0137557 1.45854 Locus1514 927506 0.44 0.0333542 0.0188406 0.57117 -Locus1515 929447 0.12 0.402713 0.0187618 3.0664 +Locus1515 929447 0.12 0.19807 0.0187618 2.3568 Locus1517 933696 0.08 0.038349 0.0163257 0.853987 -Locus1520 936363 0.12 0.402713 0.0185473 3.0779 +Locus1520 936363 0.12 0.198558 0.0185473 2.37076 Locus1522 937614 0.06 0.0751223 0.0151952 1.59814 -Locus1523 937992 0.12 0.402713 0.0170729 3.16073 -Locus1524 938938 0.12 0.402713 0.0170729 3.16073 -Locus1525 940126 0.12 0.402713 0.0170729 3.16073 -Locus1526 941989 0.12 0.181251 0.0148099 2.50459 -Locus1527 942435 0.12 0.181251 0.0148099 2.50459 +Locus1523 937992 0.12 0.19863 0.0170729 2.45395 +Locus1524 938938 0.12 0.198731 0.0170729 2.45446 +Locus1525 940126 0.12 0.198825 0.0170729 2.45493 Locus1528 942701 0.76 0.0149378 0.0487253 -1.1823 Locus1530 944057 0.68 0.0172438 0.0236822 -0.317269 Locus1531 944236 0.32 0.0236822 0.0172438 0.317269 @@ -1007,7 +770,7 @@ Locus1554 953876 0.68 0.0184285 0.022777 -0.211855 Locus1555 953943 0.84 0.0132271 0.069294 -1.65609 Locus1556 955283 0.9 0.0117723 0.116409 -2.29136 Locus1558 956181 0.72 0.0165261 0.0247222 -0.402757 -Locus1560 956619 0.12 0.404946 0.0107451 3.6293 +Locus1560 956619 0.12 0.202149 0.0107451 2.93455 Locus1561 957332 0.9 0.0118147 0.116409 -2.28776 Locus1562 957388 0.1 0.116409 0.0118147 2.28776 Locus1563 957711 0.12 0.0909377 0.0102223 2.1856 @@ -1017,8 +780,6 @@ Locus1569 963763 0.06 0.109715 0.0109119 2.30803 Locus1570 964806 0.28 0.0518154 0.0112046 1.53136 Locus1571 965571 0.06 0.109715 0.0100904 2.3863 Locus1573 967404 0.28 0.0324479 0.0143159 0.818268 -Locus1574 967503 0.06 0.421675 0.00938983 3.80461 -Locus1576 968851 0.06 0.421675 0.00952693 3.79011 Locus1577 968975 0.1 0.112821 0.00960481 2.46354 Locus1578 969979 0.68 0.0158289 0.0210997 -0.287419 Locus1579 970029 0.3 0.0448259 0.0096815 1.53257 @@ -1026,34 +787,30 @@ Locus1580 970238 0.26 0.0368299 0.0121493 1.10904 Locus1581 970304 0.68 0.0145859 0.0209118 -0.360263 Locus1583 970529 0.1 0.189115 0.00891802 3.05428 Locus1586 971124 0.2 0.0630091 0.00764976 2.10861 -Locus1588 971698 0.12 0.407489 0.00936148 3.77341 +Locus1588 971698 0.12 0.205711 0.00936148 3.08987 Locus1589 971814 0.08 0.139652 0.00874038 2.7712 -Locus1590 971870 0.12 0.407489 0.00954885 3.75359 +Locus1590 971870 0.12 0.205711 0.00954885 3.07005 Locus1591 972304 0.18 0.067789 0.0118443 1.74455 -Locus1593 972558 0.06 0.420547 0.0100234 3.73664 Locus1594 972697 0.28 0.0313001 0.0117797 0.977242 -Locus1595 973914 0.06 0.420547 0.0117174 3.58048 -Locus1597 974703 0.06 0.420547 0.0119358 3.56202 Locus1598 974894 0.68 0.0193027 0.0226162 -0.15842 -Locus1599 975299 0.06 0.420547 0.0120547 3.5521 Locus1601 975834 0.06 0.159263 0.0125449 2.54124 Locus1602 977511 0.08 0.184044 0.0137445 2.59454 Locus1604 978154 0.68 0.0214568 0.0320075 -0.39993 Locus1605 981080 0.3 0.0402083 0.0203562 0.68069 Locus1606 982432 0.66 0.0228527 0.0282617 -0.212438 Locus1607 982633 0.3 0.0402083 0.0201394 0.691395 -Locus1608 982699 0.12 0.407489 0.0163979 3.21286 +Locus1608 982699 0.12 0.206394 0.0163979 2.53264 Locus1611 985760 0.06 0.136481 0.0150018 2.20801 Locus1612 986480 0.32 0.0552599 0.0178462 1.13026 Locus1613 987351 0.06 0.136481 0.0158647 2.15209 Locus1615 987797 0.94 0.0158648 0.136481 -2.15208 -Locus1618 993198 0.12 0.407489 0.0170919 3.17141 +Locus1618 993198 0.12 0.207097 0.0170919 2.49458 Locus1619 993818 0.08 0.184044 0.0146711 2.52929 Locus1620 994999 0.22 0.0598577 0.0192796 1.13292 -Locus1622 995598 0.12 0.407489 0.016333 3.21682 -Locus1623 995886 0.12 0.407489 0.016333 3.21682 +Locus1622 995598 0.12 0.207284 0.016333 2.5409 +Locus1623 995886 0.12 0.207284 0.016333 2.5409 Locus1624 996070 0.1 0.0823173 0.0139666 1.77391 -Locus1625 996489 0.88 0.0151482 0.407489 -3.29213 +Locus1625 996489 0.88 0.0151482 0.207345 -2.6165 Locus1626 997428 0.2 0.0983046 0.0149701 1.88202 Locus1627 1000993 0.28 0.0480755 0.0154652 1.13418 Locus1628 1001885 0.4 0.0247267 0.0173957 0.351659 @@ -1105,20 +862,20 @@ Locus1680 1021980 0.1 0.0823173 0.00818534 2.30824 Locus1681 1022075 0.18 0.0575579 0.00991786 1.75845 Locus1682 1022193 0.24 0.0472382 0.0120978 1.36218 Locus1683 1022675 0.08 0.200083 0.00919935 3.0796 -Locus1684 1023697 0.06 0.468739 0.00892215 3.96151 +Locus1684 1023697 0.06 0.461449 0.00892215 3.94583 Locus1685 1023942 0.18 0.0575579 0.0109263 1.66162 Locus1686 1023986 0.18 0.0575579 0.0109263 1.66162 Locus1689 1026950 0.12 0.0906372 0.0106466 2.14163 Locus1690 1027323 0.1 0.0823173 0.00985677 2.12242 Locus1691 1027345 0.58 0.0169513 0.0233891 -0.321924 Locus1693 1028409 0.58 0.0169513 0.0232851 -0.317466 -Locus1694 1028592 0.06 0.468739 0.00988318 3.85921 +Locus1694 1028592 0.06 0.459412 0.00988318 3.83911 Locus1696 1029691 0.34 0.042599 0.0154511 1.01415 Locus1699 1031472 0.12 0.0906372 0.0157069 1.75276 Locus1701 1031798 0.06 0.582529 0.0167446 3.5493 Locus1703 1036323 0.06 0.159263 0.0171682 2.2275 Locus1704 1038314 0.18 0.0673074 0.0193215 1.24805 -Locus1705 1039260 0.06 1.66037 0.0180718 4.52045 +Locus1705 1039260 0.06 0.67379 0.0180718 3.61857 Locus1707 1044394 0.24 0.0746482 0.0215337 1.24317 Locus1708 1046853 0.06 0.315604 0.0153267 3.02489 Locus1709 1048454 0.3 0.0403075 0.0231192 0.555871 @@ -1217,9 +974,9 @@ Locus1845 1153051 0.12 0.184096 0.00821994 3.10889 Locus1846 1153314 0.86 0.00854144 0.123383 -2.67037 Locus1848 1153795 0.14 0.125696 0.0083122 2.71614 Locus1850 1154438 0.58 0.0136971 0.023316 -0.531958 -Locus1853 1156493 0.16 0.126508 0.012576 2.30851 +Locus1853 1156493 0.16 0.126411 0.012576 2.30775 Locus1854 1157080 0.22 0.0418083 0.0147849 1.03949 -Locus1856 1157916 0.06 1.51695 0.0102034 5.00174 +Locus1856 1157916 0.06 0.56979 0.0102034 4.02255 Locus1860 1159754 0.78 0.0147002 0.0425518 -1.06286 Locus1861 1159940 0.22 0.0425518 0.0147002 1.06286 Locus1865 1161998 0.54 0.0196009 0.0166707 0.161924 @@ -1229,16 +986,16 @@ Locus1868 1162511 0.54 0.0169229 0.0166707 0.0150165 Locus1869 1162572 0.46 0.0166707 0.0169229 -0.0150165 Locus1870 1163610 0.48 0.0164041 0.0148085 0.10233 Locus1871 1163730 0.18 0.0594172 0.00971921 1.81048 -Locus1872 1164849 0.14 0.163535 0.010939 2.70469 -Locus1873 1165445 0.14 0.163535 0.010939 2.70469 -Locus1874 1166178 0.86 0.010939 0.163535 -2.70469 +Locus1872 1164849 0.14 0.162506 0.010939 2.69838 +Locus1873 1165445 0.14 0.162506 0.010939 2.69838 +Locus1874 1166178 0.86 0.010939 0.162393 -2.69768 Locus1879 1168555 0.26 0.0498255 0.00977844 1.62835 -Locus1880 1168591 0.14 0.158416 0.0110095 2.66647 -Locus1881 1169264 0.06 1.51695 0.0092492 5.09992 -Locus1882 1170860 0.12 0.390063 0.010789 3.58778 +Locus1880 1168591 0.14 0.157038 0.0110095 2.65773 +Locus1881 1169264 0.06 0.573633 0.0092492 4.12745 +Locus1882 1170860 0.12 0.20044 0.010789 2.92199 Locus1883 1172545 0.24 0.0475636 0.0105927 1.5019 -Locus1884 1173195 0.06 1.26125 0.00738917 5.13984 -Locus1885 1173749 0.12 0.390063 0.00833627 3.84569 +Locus1884 1173195 0.06 0.498914 0.00738917 4.21242 +Locus1885 1173749 0.12 0.200548 0.00833627 3.18044 Locus1887 1174701 0.34 0.029491 0.00829141 1.26886 Locus1888 1174777 0.34 0.029491 0.00829141 1.26886 Locus1889 1175022 0.06 0.123439 0.00563158 3.08735 @@ -1246,8 +1003,8 @@ Locus1890 1175276 0.34 0.029491 0.00780529 1.32928 Locus1891 1175346 0.22 0.0405082 0.00720067 1.72733 Locus1892 1175365 0.06 0.0227519 0.00675919 1.21374 Locus1895 1176913 0.42 0.0226965 0.0108532 0.737746 -Locus1898 1177252 0.1 0.587921 0.00755933 4.35381 -Locus1899 1177280 0.1 0.587921 0.00755933 4.35381 +Locus1898 1177252 0.1 0.303594 0.00755933 3.69291 +Locus1899 1177280 0.1 0.303594 0.00755933 3.69291 Locus1900 1177317 0.42 0.0227907 0.0113269 0.699174 Locus1901 1177343 0.42 0.0227907 0.0113269 0.699174 Locus1903 1179079 0.62 0.0101951 0.0290628 -1.04756 @@ -1263,7 +1020,7 @@ Locus1917 1186084 0.14 0.0345359 0.00868137 1.38082 Locus1918 1186134 0.14 0.100284 0.00861775 2.45418 Locus1919 1186388 0.32 0.0302453 0.0112308 0.99068 Locus1922 1188205 0.32 0.0313744 0.0112308 1.02733 -Locus1923 1188548 0.12 0.478692 0.00764814 4.1366 +Locus1923 1188548 0.12 0.289053 0.00764814 3.63215 Locus1924 1188705 0.32 0.0313744 0.0107261 1.07332 Locus1926 1190838 0.32 0.0313744 0.0106728 1.0783 Locus1928 1191325 0.18 0.0537644 0.00699812 2.03897 @@ -1272,26 +1029,26 @@ Locus1930 1192018 0.68 0.00914629 0.0313744 -1.23264 Locus1931 1193444 0.06 0.427835 0.00770328 4.01709 Locus1932 1194239 0.14 0.09739 0.00847633 2.44145 Locus1933 1194354 0.1 0.124856 0.00842822 2.69558 -Locus1935 1195658 0.12 0.471514 0.00868999 3.99378 +Locus1935 1195658 0.12 0.281879 0.00868999 3.47931 Locus1937 1197519 0.22 0.0546295 0.00839484 1.87296 Locus1938 1197698 0.22 0.0546295 0.00839484 1.87296 Locus1939 1197732 0.22 0.0546295 0.00839484 1.87296 Locus1940 1198377 0.22 0.0546295 0.00839484 1.87296 Locus1941 1198546 0.66 0.0105523 0.0267444 -0.929978 Locus1942 1198987 0.34 0.0264881 0.00784294 1.21708 -Locus1943 1199173 0.08 0.970462 0.00643414 5.01615 +Locus1943 1199173 0.08 0.503801 0.00643414 4.36056 Locus1944 1199223 0.68 0.0103925 0.0298552 -1.05528 Locus1945 1199267 0.32 0.0298552 0.0103925 1.05528 Locus1946 1199518 0.56 0.0144134 0.0203912 -0.346942 Locus1947 1199696 0.1 0.124856 0.00722196 2.85004 Locus1948 1201231 0.56 0.0144134 0.0220106 -0.423362 Locus1949 1201633 0.56 0.0144134 0.0220106 -0.423362 -Locus1950 1202648 0.12 0.490826 0.00964431 3.92972 -Locus1951 1202960 0.12 0.490826 0.00964431 3.92972 +Locus1950 1202648 0.12 0.301327 0.00964431 3.44183 +Locus1951 1202960 0.12 0.301183 0.00964431 3.44135 Locus1953 1203378 0.08 0.0717678 0.00914144 2.06062 Locus1954 1205912 0.06 0.270026 0.00838176 3.47246 Locus1955 1206056 0.64 0.00882875 0.0311289 -1.26012 -Locus1956 1206505 0.12 0.490826 0.00626998 4.36032 +Locus1956 1206505 0.12 0.301315 0.00626998 3.87238 Locus1957 1206754 0.06 0.047795 0.00561587 2.14132 Locus1958 1206780 0.48 0.0187915 0.0120105 0.447625 Locus1959 1206952 0.24 0.0380383 0.00751436 1.62178 @@ -1326,7 +1083,7 @@ Locus1993 1220317 0.18 0.109566 0.00917258 2.48031 Locus1994 1220355 0.18 0.109566 0.00917258 2.48031 Locus1995 1220428 0.82 0.00917258 0.109566 -2.48031 Locus1996 1220834 0.18 0.109566 0.00917258 2.48031 -Locus1997 1221267 0.12 0.286613 0.00838208 3.53204 +Locus1997 1221267 0.12 0.137369 0.00838208 2.79658 Locus1999 1223521 0.52 0.0138523 0.0188305 -0.307028 Locus2000 1223907 0.14 0.0546314 0.00789084 1.93491 Locus2001 1224033 0.24 0.0351069 0.00875804 1.38842 @@ -1335,24 +1092,24 @@ Locus2003 1224196 0.14 0.0546314 0.00753653 1.98085 Locus2004 1224278 0.34 0.0288199 0.00888885 1.17627 Locus2005 1225484 0.34 0.026725 0.0117698 0.820066 Locus2006 1226539 0.06 0.146019 0.00733607 2.99093 -Locus2007 1226803 0.1 0.267598 0.00858921 3.43898 +Locus2007 1226803 0.1 0.244979 0.00858921 3.35067 Locus2009 1227093 0.06 0.270026 0.00777628 3.54744 Locus2010 1227634 0.74 0.00993803 0.0448256 -1.50641 -Locus2011 1228728 0.12 0.490826 0.00912764 3.98478 -Locus2012 1229486 0.12 0.490826 0.00912764 3.98478 +Locus2011 1228728 0.12 0.301209 0.00912764 3.4965 +Locus2012 1229486 0.12 0.301263 0.00912764 3.49668 Locus2013 1229669 0.48 0.0220931 0.0125352 0.566727 Locus2014 1229787 0.48 0.0220931 0.0125352 0.566727 Locus2015 1230313 0.14 0.0593166 0.00921651 1.86189 -Locus2016 1230464 0.12 0.490826 0.0104946 3.84523 +Locus2016 1230464 0.12 0.301228 0.0104946 3.35701 Locus2017 1231075 0.06 0.073967 0.00987395 2.01372 Locus2018 1232806 0.42 0.0302715 0.0153707 0.677745 Locus2019 1233209 0.42 0.0302715 0.0153707 0.677745 -Locus2020 1234717 0.1 0.140711 0.0114272 2.51072 +Locus2020 1234717 0.1 0.117346 0.0114272 2.32913 Locus2021 1235720 0.06 0.431897 0.0100288 3.76272 Locus2023 1236745 0.06 0.034736 0.0109579 1.15372 Locus2024 1237614 0.16 0.0856139 0.0109154 2.05967 Locus2025 1238789 0.48 0.0255524 0.0260014 -0.0174205 -Locus2026 1239153 0.08 0.970462 0.0116492 4.42254 +Locus2026 1239153 0.08 0.510425 0.0116492 3.78001 Locus2027 1239974 0.52 0.0260014 0.0234824 0.101899 Locus2028 1240206 0.24 0.059804 0.0158949 1.32507 Locus2029 1241005 0.88 0.0164499 0.142248 -2.15725 @@ -1366,7 +1123,7 @@ Locus2038 1252283 0.16 0.105835 0.0180882 1.76662 Locus2039 1252797 0.16 0.132613 0.0184029 1.97493 Locus2040 1255863 0.06 0.270026 0.0159652 2.82811 Locus2044 1258253 0.3 0.0362933 0.0207802 0.557632 -Locus2045 1258548 0.08 0.970462 0.0139724 4.24069 +Locus2045 1258548 0.08 0.513775 0.0139724 3.6047 Locus2046 1259121 0.06 0.270026 0.0139583 2.96245 Locus2047 1260815 0.3 0.0362933 0.0209953 0.547333 Locus2048 1260988 0.06 0.431897 0.0128577 3.51424 @@ -1401,7 +1158,7 @@ Locus2080 1281649 0.54 0.0335636 0.018558 0.592541 Locus2081 1281919 0.46 0.018558 0.0335636 -0.592541 Locus2082 1282967 0.3 0.0367076 0.0192844 0.64369 Locus2083 1283961 0.1 0.115084 0.0134499 2.14669 -Locus2084 1284539 0.08 0.917011 0.0133278 4.23127 +Locus2084 1284539 0.08 0.464626 0.0133278 3.55138 Locus2086 1284602 0.46 0.0372391 0.0142651 0.959546 Locus2087 1285265 0.54 0.0142651 0.0372391 -0.959546 Locus2088 1285929 0.54 0.0142651 0.0372391 -0.959546 @@ -1420,31 +1177,31 @@ Locus2105 1291738 0.3 0.0331402 0.0139074 0.868327 Locus2106 1292003 0.06 0.0615372 0.01014 1.80316 Locus2107 1292553 0.84 0.0126788 0.0399693 -1.14818 Locus2108 1293836 0.24 0.0526663 0.0138088 1.33867 -Locus2109 1294657 0.08 0.912122 0.0115122 4.37237 -Locus2112 1295618 0.06 0.762165 0.00920594 4.41631 +Locus2109 1294657 0.08 0.461348 0.0115122 3.69075 +Locus2112 1295618 0.06 0.515132 0.00920594 4.02457 Locus2113 1295865 0.4 0.0198362 0.0185168 0.0688288 -Locus2114 1296509 0.08 0.912122 0.0109921 4.41859 +Locus2114 1296509 0.08 0.462438 0.0109921 3.73933 Locus2116 1297157 0.06 0.053038 0.00990474 1.678 -Locus2117 1297205 0.08 0.912122 0.0109641 4.42115 +Locus2117 1297205 0.08 0.462438 0.0109641 3.74189 Locus2120 1299995 0.6 0.0210139 0.0165439 0.239169 -Locus2121 1300231 0.08 0.912122 0.0101553 4.49778 +Locus2121 1300231 0.08 0.462438 0.0101553 3.81851 Locus2122 1300430 0.06 0.0605325 0.0097802 1.82282 -Locus2123 1300607 0.06 1.81521 0.00969572 5.23227 +Locus2123 1300607 0.06 0.91584 0.00969572 4.54816 Locus2124 1301226 0.2 0.0586846 0.0119924 1.5879 -Locus2128 1302731 0.08 0.909605 0.0112546 4.39223 +Locus2128 1302731 0.08 0.460211 0.0112546 3.71091 Locus2130 1303486 0.1 0.115084 0.0106089 2.38397 Locus2134 1305059 0.06 0.427835 0.0101933 3.73701 Locus2136 1307180 0.22 0.0601433 0.0128234 1.54546 Locus2138 1307912 0.1 0.0723526 0.0134082 1.68569 Locus2139 1307997 0.56 0.0269038 0.0174005 0.435766 -Locus2140 1309761 0.1 0.557509 0.0134884 3.72165 +Locus2140 1309761 0.1 0.288548 0.0134884 3.06303 Locus2141 1310662 0.12 0.0550219 0.0140972 1.36175 Locus2142 1311052 0.18 0.102406 0.0150754 1.91588 -Locus2145 1314908 0.9 0.0150833 0.557509 -3.60989 +Locus2145 1314908 0.9 0.0150833 0.289116 -2.95324 Locus2146 1315830 0.18 0.102406 0.015284 1.90214 -Locus2147 1316003 0.1 0.486343 0.0133081 3.59854 +Locus2147 1316003 0.1 0.27195 0.0133081 3.01725 Locus2148 1317858 0.74 0.0182935 0.026451 -0.368749 -Locus2149 1318290 0.06 1.81521 0.0134517 4.90485 +Locus2149 1318290 0.06 0.922622 0.0134517 4.22811 Locus2150 1318329 0.18 0.083689 0.015535 1.68401 Locus2151 1319114 0.18 0.083689 0.015535 1.68401 Locus2154 1320089 0.14 0.097759 0.018149 1.68389 @@ -1467,18 +1224,18 @@ Locus2176 1334863 0.34 0.0465962 0.0137439 1.22093 Locus2177 1335215 0.68 0.0223277 0.0431492 -0.658837 Locus2178 1337138 0.82 0.016024 0.1173 -1.99065 Locus2179 1337610 0.8 0.0162786 0.0779391 -1.56608 -Locus2180 1338229 0.12 0.263068 0.0130493 3.00368 +Locus2180 1338229 0.12 0.216185 0.0130493 2.8074 Locus2181 1339335 0.14 0.101276 0.0137546 1.99648 -Locus2182 1341267 0.12 0.263068 0.0144878 2.8991 +Locus2182 1341267 0.12 0.216373 0.0144878 2.7037 Locus2183 1342147 0.2 0.0779391 0.0159323 1.58758 Locus2184 1343467 0.7 0.0199249 0.023318 -0.157258 -Locus2185 1346198 0.12 0.263068 0.0174216 2.7147 -Locus2187 1347863 0.06 0.762165 0.0160137 3.86272 +Locus2185 1346198 0.12 0.216659 0.0174216 2.52061 +Locus2187 1347863 0.06 0.53129 0.0160137 3.50186 Locus2188 1348864 0.1 0.128022 0.015219 2.12966 Locus2190 1349889 0.06 0.142626 0.014032 2.31889 Locus2192 1351776 0.06 0.142626 0.0139108 2.32756 Locus2193 1352222 0.06 0.142626 0.0139108 2.32756 -Locus2194 1353574 0.06 0.762165 0.0137001 4.01876 +Locus2194 1353574 0.06 0.533011 0.0137001 3.66114 Locus2195 1354150 0.18 0.0753191 0.0142915 1.66207 Locus2196 1354210 0.48 0.0151385 0.0236102 -0.444433 Locus2197 1354424 0.12 0.104789 0.010101 2.33932 @@ -1488,12 +1245,12 @@ Locus2201 1355619 0.52 0.0233417 0.0147473 0.459181 Locus2202 1355769 0.52 0.0233417 0.0147473 0.459181 Locus2203 1356065 0.12 0.100372 0.00729874 2.62118 Locus2204 1356384 0.52 0.0237149 0.0147473 0.475042 -Locus2205 1356656 0.06 0.762165 0.00877458 4.4643 +Locus2205 1356656 0.06 0.534157 0.00877458 4.10883 Locus2206 1356729 0.48 0.01498 0.0237149 -0.459389 Locus2207 1357214 0.12 0.104789 0.010408 2.30938 Locus2208 1357631 0.46 0.0286017 0.0122319 0.849414 Locus2209 1357806 0.06 0.427835 0.0110224 3.65881 -Locus2210 1358596 0.08 0.371063 0.011823 3.44633 +Locus2210 1358596 0.08 0.337154 0.011823 3.35049 Locus2213 1360238 0.22 0.0431631 0.016542 0.959082 Locus2214 1360735 0.78 0.016542 0.0431631 -0.959082 Locus2215 1361739 0.78 0.016542 0.0431631 -0.959082 @@ -1507,7 +1264,7 @@ Locus2224 1365924 0.94 0.0164203 0.142626 -2.16171 Locus2225 1367129 0.06 0.142626 0.0164203 2.16171 Locus2226 1367276 0.06 0.142626 0.0164203 2.16171 Locus2227 1367289 0.06 0.142626 0.0164203 2.16171 -Locus2228 1367648 0.12 0.214173 0.0166218 2.55607 +Locus2228 1367648 0.12 0.200006 0.0166218 2.48763 Locus2229 1368026 0.06 0.142626 0.0152469 2.23585 Locus2230 1368470 0.06 0.142626 0.0152469 2.23585 Locus2232 1369823 0.58 0.0221951 0.0239637 -0.0766672 @@ -1539,11 +1296,11 @@ Locus2272 1401229 0.54 0.0195835 0.0164765 0.172755 Locus2273 1403546 0.26 0.0617257 0.0128315 1.5708 Locus2274 1403771 0.32 0.0310041 0.014906 0.732355 Locus2277 1407774 0.3 0.0485267 0.0146936 1.1947 -Locus2279 1409462 0.18 0.202512 0.0116007 2.85973 -Locus2280 1410797 0.82 0.0116007 0.202512 -2.85973 -Locus2281 1410840 0.82 0.0116007 0.202512 -2.85973 -Locus2284 1411828 0.18 0.202512 0.0115168 2.86699 -Locus2285 1412976 0.06 1.45681 0.0102108 4.96056 +Locus2279 1409462 0.18 0.167468 0.0116007 2.66973 +Locus2280 1410797 0.82 0.0116007 0.167468 -2.66973 +Locus2281 1410840 0.82 0.0116007 0.167468 -2.66973 +Locus2284 1411828 0.18 0.167572 0.0115168 2.6776 +Locus2285 1412976 0.06 0.774545 0.0102108 4.32883 Locus2286 1413187 0.1 0.127776 0.0110773 2.44539 Locus2287 1413438 0.26 0.0625086 0.013027 1.56828 Locus2288 1415292 0.46 0.0195057 0.027106 -0.329052 @@ -1562,25 +1319,25 @@ Locus2301 1421469 0.26 0.0330167 0.0175251 0.633375 Locus2303 1422969 0.58 0.0247752 0.0229771 0.075346 Locus2304 1423826 0.32 0.0701656 0.0117487 1.78712 Locus2305 1423996 0.18 0.0854448 0.0149093 1.74589 -Locus2306 1424294 0.06 1.81521 0.0113721 5.0728 +Locus2306 1424294 0.06 0.956906 0.0113721 4.43255 Locus2307 1425556 0.26 0.0362816 0.0173762 0.736211 Locus2310 1427937 0.66 0.0202036 0.0233915 -0.14651 Locus2311 1429304 0.28 0.0323271 0.0171531 0.633728 -Locus2312 1429783 0.06 1.81521 0.0107098 5.1328 +Locus2312 1429783 0.06 0.95876 0.0107098 4.49448 Locus2314 1430271 0.26 0.0345222 0.0134895 0.939694 Locus2315 1430542 0.16 0.0726212 0.0123892 1.76843 -Locus2317 1431043 0.06 1.81521 0.00945942 5.25694 +Locus2317 1431043 0.06 0.959328 0.00945942 4.61922 Locus2318 1431167 0.46 0.0339801 0.0162937 0.734993 Locus2319 1431388 0.22 0.0544451 0.015093 1.28296 Locus2320 1431971 0.08 0.173636 0.0107376 2.78321 -Locus2321 1433334 0.06 1.81521 0.0099736 5.20401 +Locus2321 1433334 0.06 0.95998 0.0099736 4.56697 Locus2324 1433854 0.28 0.0321252 0.014551 0.791977 Locus2327 1434367 0.22 0.0549676 0.0141524 1.35686 Locus2328 1434377 0.22 0.0549676 0.0141524 1.35686 Locus2329 1434508 0.28 0.0353941 0.0128376 1.01417 Locus2330 1434615 0.22 0.0549676 0.0144092 1.33888 Locus2331 1434759 0.22 0.147943 0.00929302 2.76756 -Locus2332 1435050 0.06 1.81521 0.00966436 5.23551 +Locus2332 1435050 0.06 0.96068 0.00966436 4.5992 Locus2333 1435903 0.22 0.147943 0.00972612 2.72201 Locus2334 1435965 0.86 0.0126751 0.110032 -2.16113 Locus2336 1437786 0.28 0.0928554 0.0114874 2.08979 @@ -1604,7 +1361,7 @@ Locus2362 1449600 0.56 0.0400087 0.014495 1.01529 Locus2364 1451412 0.2 0.0392021 0.0178544 0.78648 Locus2365 1452236 0.56 0.0387726 0.0145148 0.982545 Locus2366 1455347 0.2 0.0392021 0.018402 0.756273 -Locus2367 1456009 0.18 0.259332 0.010613 3.19602 +Locus2367 1456009 0.18 0.227003 0.010613 3.06288 Locus2368 1457204 0.2 0.0392021 0.0168648 0.843502 Locus2369 1458469 0.56 0.0346564 0.0146014 0.864365 Locus2370 1459815 0.06 0.0973518 0.0118557 2.10552 @@ -1616,8 +1373,8 @@ Locus2377 1463755 0.7 0.0214957 0.0221866 -0.0316339 Locus2378 1463977 0.2 0.0389704 0.015463 0.924354 Locus2379 1464089 0.1 0.122981 0.0126081 2.27769 Locus2382 1464358 0.66 0.0224363 0.0204135 0.0944853 -Locus2383 1464467 0.18 0.259332 0.0119074 3.08094 -Locus2384 1464671 0.18 0.259332 0.0119074 3.08094 +Locus2383 1464467 0.18 0.22724 0.0119074 2.94884 +Locus2384 1464671 0.18 0.22724 0.0119074 2.94884 Locus2387 1468746 0.7 0.0210498 0.0279417 -0.28323 Locus2388 1469603 0.3 0.0279417 0.0210498 0.28323 Locus2389 1469714 0.7 0.0210498 0.0279417 -0.28323 @@ -1638,7 +1395,7 @@ Locus2406 1478257 0.18 0.0875012 0.0140463 1.82929 Locus2407 1480039 0.22 0.0384338 0.0183589 0.738822 Locus2409 1480687 0.06 0.160015 0.0131467 2.49909 Locus2412 1483496 0.08 0.154581 0.0133869 2.44644 -Locus2413 1483918 0.06 1.81521 0.0117082 5.04367 +Locus2413 1483918 0.06 0.976794 0.0117082 4.42399 Locus2414 1484699 0.08 0.154581 0.0139619 2.40439 Locus2415 1485763 0.6 0.0153003 0.0465234 -1.11209 Locus2416 1486205 0.6 0.0153003 0.0465234 -1.11209 @@ -1647,15 +1404,15 @@ Locus2420 1490119 0.42 0.0226515 0.0232888 -0.0277446 Locus2421 1491001 0.06 0.0974918 0.0100302 2.27417 Locus2422 1491405 0.42 0.0226515 0.0243612 -0.0727642 Locus2423 1491762 0.12 0.0744409 0.0133296 1.72002 -Locus2424 1491979 0.18 0.259332 0.0107747 3.18091 +Locus2424 1491979 0.18 0.228825 0.0107747 3.05576 Locus2426 1493471 0.2 0.0855609 0.0138021 1.82441 Locus2428 1493899 0.2 0.0899373 0.0138021 1.8743 -Locus2429 1494524 0.18 0.236763 0.0117419 3.0039 +Locus2429 1494524 0.18 0.206319 0.0117419 2.86626 Locus2430 1495667 0.1 0.223381 0.0108909 3.02095 -Locus2431 1496420 0.18 0.236763 0.0116105 3.01515 +Locus2431 1496420 0.18 0.206425 0.0116105 2.87803 Locus2432 1496831 0.18 0.0407459 0.0150628 0.995128 Locus2433 1500163 0.58 0.0202281 0.0284911 -0.34252 -Locus2435 1502246 0.12 0.555077 0.00887341 4.13605 +Locus2435 1502246 0.12 0.388525 0.00887341 3.7793 Locus2436 1502263 0.26 0.0476041 0.0121379 1.36659 Locus2437 1502798 0.14 0.101355 0.00994116 2.32195 Locus2438 1503110 0.18 0.0887641 0.0107354 2.11243 @@ -1668,7 +1425,7 @@ Locus2447 1509514 0.3 0.0441877 0.0146829 1.10177 Locus2450 1512259 0.08 0.145207 0.0116631 2.52173 Locus2452 1513647 0.3 0.0435059 0.0154746 1.0337 Locus2453 1515782 0.12 0.065667 0.0124589 1.66216 -Locus2454 1517067 0.12 0.555077 0.0107266 3.94638 +Locus2454 1517067 0.12 0.390687 0.0107266 3.59518 Locus2456 1517165 0.16 0.0438728 0.0132549 1.19693 Locus2457 1518380 0.2 0.0899373 0.0120115 2.01325 Locus2458 1520183 0.1 0.088266 0.0129749 1.91734 @@ -1680,7 +1437,7 @@ Locus2466 1524021 0.12 0.0909173 0.0112214 2.09213 Locus2467 1524348 0.06 0.276622 0.00995139 3.32494 Locus2468 1524386 0.3 0.0445443 0.0146354 1.11304 Locus2469 1525678 0.06 0.276622 0.0126826 3.08242 -Locus2470 1526072 0.12 0.555077 0.0129507 3.75796 +Locus2470 1526072 0.12 0.3918 0.0129507 3.4096 Locus2474 1531523 0.2 0.119406 0.0138193 2.15646 Locus2475 1532556 0.34 0.0338728 0.0177268 0.647536 Locus2477 1534679 0.12 0.0664479 0.0096358 1.93093 @@ -1699,7 +1456,7 @@ Locus2497 1541900 0.84 0.0168823 0.0243004 -0.364228 Locus2498 1543520 0.08 0.115372 0.0139256 2.11443 Locus2499 1543848 0.84 0.0168823 0.0306204 -0.595403 Locus2501 1544828 0.12 0.0636386 0.0154006 1.41882 -Locus2502 1544840 0.06 1.81521 0.0115131 5.06047 +Locus2502 1544840 0.06 0.997076 0.0115131 4.46134 Locus2504 1546900 0.88 0.0141009 0.0636386 -1.50698 Locus2505 1547031 0.88 0.0141009 0.0636386 -1.50698 Locus2507 1548821 0.08 0.129079 0.0123961 2.34304 @@ -1718,26 +1475,26 @@ Locus2525 1562012 0.12 0.127252 0.0180061 1.95546 Locus2528 1562172 0.12 0.127252 0.0182561 1.94167 Locus2529 1562579 0.12 0.127252 0.0182561 1.94167 Locus2530 1563318 0.12 0.127252 0.0182561 1.94167 -Locus2531 1563355 0.14 0.346271 0.0153206 3.11802 +Locus2531 1563355 0.14 0.300641 0.0153206 2.97672 Locus2532 1563933 0.32 0.0334575 0.0210385 0.46392 Locus2533 1563996 0.68 0.0210385 0.0334575 -0.46392 Locus2534 1564042 0.68 0.0210385 0.0334575 -0.46392 Locus2535 1565032 0.68 0.0210385 0.0334575 -0.46392 -Locus2538 1567736 0.14 0.346271 0.0135297 3.24233 +Locus2538 1567736 0.14 0.301167 0.0135297 3.10277 Locus2539 1569295 0.6 0.0235763 0.0232746 0.0128798 Locus2541 1570967 0.18 0.119256 0.0111971 2.36562 Locus2542 1571654 0.08 0.164533 0.0113966 2.6698 -Locus2544 1572587 0.14 0.346271 0.0112037 3.43098 -Locus2547 1574729 0.14 0.346271 0.0103955 3.50585 +Locus2544 1572587 0.14 0.301532 0.0112037 3.29263 +Locus2547 1574729 0.14 0.301866 0.0103955 3.36861 Locus2548 1574804 0.32 0.0381476 0.0141185 0.993976 -Locus2549 1575066 0.14 0.346271 0.00903509 3.64611 +Locus2549 1575066 0.14 0.301866 0.00903509 3.50887 Locus2550 1575504 0.18 0.119256 0.00904922 2.5786 Locus2551 1576131 0.28 0.0467008 0.0150509 1.13233 Locus2553 1576638 0.72 0.0148799 0.0467008 -1.14375 Locus2555 1576903 0.28 0.0483937 0.0148799 1.17936 Locus2556 1577894 0.06 0.0693784 0.0110594 1.83629 Locus2558 1579518 0.94 0.0111478 0.0693784 -1.82833 -Locus2561 1580896 0.14 0.346271 0.0109854 3.45066 +Locus2561 1580896 0.14 0.302491 0.0109854 3.31549 Locus2562 1580924 0.08 0.158816 0.0109324 2.67602 Locus2563 1581493 0.06 0.0693784 0.0115065 1.79666 Locus2564 1582392 0.16 0.145801 0.0109038 2.59313 @@ -1745,7 +1502,7 @@ Locus2565 1582776 0.06 0.0693784 0.0122383 1.735 Locus2568 1584689 0.06 0.0693784 0.012865 1.68507 Locus2569 1584829 0.06 0.0693784 0.012865 1.68507 Locus2570 1585084 0.06 0.0693784 0.012865 1.68507 -Locus2571 1587843 0.14 0.346271 0.0131536 3.27052 +Locus2571 1587843 0.14 0.303004 0.0131536 3.13705 Locus2577 1590573 0.4 0.0310263 0.0144951 0.761023 Locus2578 1591231 0.06 0.0693784 0.00871071 2.07502 Locus2579 1591279 0.6 0.0162006 0.0322221 -0.687601 @@ -1761,7 +1518,7 @@ Locus2590 1596612 0.14 0.0625453 0.0124038 1.61789 Locus2591 1597714 0.16 0.0588796 0.0113241 1.64856 Locus2592 1598069 0.14 0.0625453 0.0128347 1.58374 Locus2594 1599397 0.14 0.0625453 0.0128863 1.57973 -Locus2595 1599521 0.06 1.45681 0.0092654 5.05772 +Locus2595 1599521 0.06 0.836602 0.0092654 4.50306 Locus2596 1601297 0.16 0.0479137 0.0130234 1.30265 Locus2597 1601602 0.06 0.284184 0.00997354 3.34968 Locus2599 1602381 0.52 0.0177292 0.0229366 -0.257521 @@ -1821,7 +1578,7 @@ Locus2669 1630491 0.34 0.0193622 0.0192511 0.00575523 Locus2671 1631368 0.46 0.029502 0.0177882 0.50592 Locus2673 1631741 0.06 0.284184 0.0103296 3.3146 Locus2674 1632303 0.06 0.0759733 0.01115 1.91895 -Locus2675 1634208 0.14 0.276364 0.010578 3.26294 +Locus2675 1634208 0.14 0.237498 0.010578 3.11138 Locus2677 1635335 0.4 0.018666 0.0235559 -0.232675 Locus2678 1636391 0.16 0.0731236 0.0121595 1.79404 Locus2679 1636698 0.2 0.0439215 0.013222 1.20052 @@ -1836,8 +1593,8 @@ Locus2690 1646318 0.42 0.0266014 0.0135942 0.671317 Locus2691 1646537 0.2 0.0700418 0.00973832 1.97302 Locus2692 1647398 0.1 0.241249 0.00840716 3.35675 Locus2693 1647495 0.16 0.0897259 0.0106004 2.13587 -Locus2694 1648738 0.1 0.679898 0.00910581 4.31303 -Locus2695 1648821 0.14 0.270824 0.00985185 3.31381 +Locus2694 1648738 0.1 0.459372 0.00910581 3.92095 +Locus2695 1648821 0.14 0.233342 0.00985185 3.16485 Locus2696 1650632 0.64 0.0181001 0.0224519 -0.215456 Locus2697 1650657 0.14 0.100916 0.00939531 2.37408 Locus2698 1651693 0.64 0.0181001 0.0195439 -0.0767448 @@ -1864,10 +1621,10 @@ Locus2723 1663710 0.84 0.00989724 0.0821708 -2.11654 Locus2724 1664147 0.18 0.0508633 0.00888228 1.74508 Locus2725 1664670 0.16 0.0821708 0.0103866 2.06828 Locus2726 1664790 0.16 0.0821708 0.0103866 2.06828 -Locus2727 1665288 0.14 0.272018 0.00797134 3.53002 +Locus2727 1665288 0.14 0.236103 0.00797134 3.38841 Locus2729 1667076 0.84 0.0103496 0.0821708 -2.07185 Locus2730 1667170 0.48 0.0219517 0.0155376 0.345583 -Locus2731 1667873 0.12 0.398533 0.00893391 3.79794 +Locus2731 1667873 0.12 0.243137 0.00893391 3.30377 Locus2732 1668713 0.06 0.414646 0.00838506 3.90097 Locus2733 1668856 0.16 0.076223 0.00992883 2.03822 Locus2734 1668954 0.54 0.0177521 0.0177904 -0.00215453 @@ -1888,19 +1645,19 @@ Locus2751 1677816 0.1 0.170557 0.0149429 2.43483 Locus2752 1678815 0.1 0.039921 0.015429 0.950652 Locus2754 1681891 0.18 0.0424667 0.0163829 0.95248 Locus2756 1681955 0.76 0.018703 0.0613599 -1.18807 -Locus2757 1682241 0.12 0.47837 0.0133846 3.57628 +Locus2757 1682241 0.12 0.335847 0.0133846 3.22255 Locus2760 1686165 0.16 0.141299 0.0156884 2.19795 Locus2761 1686295 0.08 0.0471994 0.0137085 1.23636 Locus2762 1686603 0.12 0.0461248 0.0137822 1.20797 Locus2763 1686629 0.08 0.0471994 0.0139105 1.22174 Locus2764 1686896 0.08 0.0471994 0.0139105 1.22174 Locus2765 1686981 0.08 0.0471994 0.0139105 1.22174 -Locus2766 1687084 0.1 0.590823 0.0157023 3.62771 -Locus2767 1689020 0.12 0.47837 0.0166735 3.35656 +Locus2766 1687084 0.1 0.359637 0.0157023 3.13129 +Locus2767 1689020 0.12 0.33677 0.0166735 3.00558 Locus2773 1696371 0.24 0.0701781 0.0201671 1.24698 Locus2776 1700161 0.24 0.0701781 0.0190127 1.30593 Locus2777 1700737 0.84 0.0162405 0.0511385 -1.14703 -Locus2779 1702720 0.1 0.595699 0.0124776 3.8658 +Locus2779 1702720 0.1 0.366035 0.0124776 3.3788 Locus2780 1702987 0.16 0.0511385 0.0151019 1.21972 Locus2781 1703394 0.84 0.0151019 0.0511385 -1.21972 Locus2782 1703611 0.84 0.0151019 0.0511385 -1.21972 @@ -1932,26 +1689,26 @@ Locus2811 1715288 0.7 0.0141551 0.0345751 -0.893057 Locus2812 1715621 0.3 0.0345751 0.0141551 0.893057 Locus2814 1716418 0.1 0.0656436 0.0106827 1.81561 Locus2815 1718068 0.3 0.0354135 0.0147724 0.874332 -Locus2817 1720089 0.06 1.81521 0.0104613 5.15627 +Locus2817 1720089 0.06 1.05554 0.0104613 4.61412 Locus2820 1721163 0.22 0.0597532 0.00946129 1.84301 Locus2821 1721574 0.32 0.0465149 0.0104384 1.49428 Locus2822 1721625 0.54 0.014526 0.0178421 -0.205618 Locus2824 1722320 0.1 0.0656436 0.00904178 1.98238 Locus2825 1722681 0.06 0.414646 0.00967761 3.75761 Locus2826 1725512 0.28 0.0490381 0.0127794 1.34476 -Locus2827 1725661 0.1 0.587416 0.00854445 4.23045 +Locus2827 1725661 0.1 0.360045 0.00854445 3.74095 Locus2828 1725700 0.28 0.0483238 0.0127794 1.33009 Locus2830 1726560 0.28 0.0483238 0.0125345 1.34944 Locus2831 1727324 0.34 0.0286773 0.00976834 1.07696 Locus2833 1727371 0.12 0.133103 0.007545 2.87024 Locus2834 1727548 0.06 0.414646 0.00692115 4.09284 Locus2835 1727825 0.28 0.048558 0.010971 1.4875 -Locus2837 1728852 0.1 0.587416 0.00854765 4.23008 +Locus2837 1728852 0.1 0.360402 0.00854765 3.74156 Locus2838 1728922 0.06 0.0306534 0.0077655 1.37305 -Locus2840 1729721 0.1 0.587416 0.00834826 4.25368 +Locus2840 1729721 0.1 0.36056 0.00834826 3.7656 Locus2841 1729722 0.24 0.0515618 0.0094201 1.69993 Locus2844 1730847 0.24 0.0515618 0.00990771 1.64947 -Locus2845 1731395 0.1 0.469513 0.00727621 4.16709 +Locus2845 1731395 0.1 0.296665 0.00727621 3.70799 Locus2846 1731996 0.68 0.0119958 0.0234658 -0.67099 Locus2847 1732622 0.26 0.0462133 0.00977181 1.55377 Locus2849 1734239 0.12 0.12675 0.0107857 2.464 @@ -1959,14 +1716,14 @@ Locus2850 1734980 0.06 0.414646 0.0114844 3.58643 Locus2851 1738006 0.06 0.0152095 0.0112974 0.297346 Locus2852 1738085 0.06 0.414646 0.0111001 3.62047 Locus2853 1739017 0.06 0.0152095 0.0115174 0.278067 -Locus2854 1739117 0.06 1.81521 0.0106702 5.1365 +Locus2854 1739117 0.06 1.05897 0.0106702 4.5976 Locus2856 1739959 0.06 0.0152095 0.0106714 0.354354 -Locus2857 1739964 0.1 0.551263 0.0112597 3.89098 -Locus2858 1740522 0.1 0.551263 0.0112597 3.89098 -Locus2859 1740881 0.1 0.469513 0.0103443 3.81526 +Locus2857 1739964 0.1 0.324464 0.0112597 3.36094 +Locus2858 1740522 0.1 0.324464 0.0112597 3.36094 +Locus2859 1740881 0.1 0.297561 0.0103443 3.35919 Locus2862 1742949 0.18 0.0680557 0.0118383 1.74899 Locus2864 1744182 0.72 0.01455 0.0434108 -1.09311 -Locus2865 1744199 0.1 0.551263 0.00950759 4.06012 +Locus2865 1744199 0.1 0.324329 0.00950759 3.52967 Locus2866 1744664 0.12 0.106275 0.00966172 2.39786 Locus2867 1744698 0.08 0.145749 0.00892286 2.79327 Locus2868 1744821 0.72 0.01455 0.0486469 -1.20699 @@ -1984,12 +1741,12 @@ Locus2884 1753634 0.22 0.0636654 0.0117467 1.69007 Locus2885 1754672 0.1 0.171412 0.00992754 2.84876 Locus2887 1755350 0.08 0.221445 0.00938902 3.16063 Locus2888 1756254 0.16 0.0830272 0.014884 1.71888 -Locus2890 1757205 0.08 0.336572 0.0144482 3.14824 -Locus2891 1757739 0.08 0.336572 0.0144482 3.14824 +Locus2890 1757205 0.08 0.289143 0.0144482 2.99635 +Locus2891 1757739 0.08 0.289143 0.0144482 2.99635 Locus2892 1759312 0.12 0.127664 0.0145629 2.17092 Locus2893 1760122 0.12 0.127664 0.0145629 2.17092 Locus2895 1761524 0.16 0.0830272 0.0146368 1.73563 -Locus2897 1761823 0.92 0.0134016 0.336572 -3.22344 +Locus2897 1761823 0.92 0.0134016 0.289953 -3.07434 Locus2898 1761887 0.12 0.127664 0.0136173 2.23805 Locus2901 1764399 0.64 0.0213797 0.0253569 -0.170609 Locus2903 1764907 0.24 0.0969529 0.0115263 2.1296 @@ -2001,7 +1758,7 @@ Locus2908 1766523 0.38 0.0432925 0.0161098 0.98855 Locus2910 1768033 0.1 0.240284 0.0136397 2.86884 Locus2913 1769484 0.22 0.0548642 0.0173493 1.15131 Locus2914 1769860 0.42 0.0398684 0.020777 0.651737 -Locus2917 1774026 0.06 1.75417 0.0149872 4.76256 +Locus2917 1774026 0.06 0.998175 0.0149872 4.19873 Locus2918 1776181 0.42 0.0405947 0.0204671 0.684816 Locus2919 1777050 0.06 0.0153017 0.0133599 0.135709 Locus2920 1777131 0.42 0.0405947 0.0192242 0.747468 @@ -2012,7 +1769,7 @@ Locus2925 1778816 0.06 0.0111366 0.0129245 -0.148885 Locus2927 1779237 0.18 0.13103 0.0127863 2.32706 Locus2928 1780368 0.16 0.0992931 0.0133495 2.00659 Locus2929 1781589 0.62 0.016549 0.0506941 -1.11949 -Locus2930 1783822 0.1 0.718564 0.0143806 3.91137 +Locus2930 1783822 0.1 0.466004 0.0143806 3.47831 Locus2933 1785130 0.46 0.0363907 0.0193762 0.630267 Locus2934 1785522 0.08 0.0410358 0.0146164 1.0323 Locus2935 1787054 0.5 0.0262212 0.0299268 -0.132183 @@ -2046,10 +1803,10 @@ Locus2968 1807693 0.8 0.0203168 0.0973186 -1.56654 Locus2969 1807723 0.8 0.0203168 0.0973186 -1.56654 Locus2971 1809720 0.34 0.0624028 0.0189827 1.19008 Locus2974 1811633 0.18 0.125326 0.0183424 1.9217 -Locus2976 1813054 0.08 0.879084 0.0162888 3.9884 +Locus2976 1813054 0.08 0.500986 0.0162888 3.4261 Locus2978 1813745 0.34 0.0621248 0.016749 1.31081 Locus2979 1813794 0.12 0.0544939 0.0178646 1.11527 -Locus2981 1817420 0.06 1.75417 0.017276 4.62043 +Locus2981 1817420 0.06 0.997775 0.017276 4.05621 Locus2982 1817484 0.84 0.0189865 0.157813 -2.11768 Locus2983 1817568 0.16 0.157813 0.0189865 2.11768 Locus2984 1819059 0.22 0.0858424 0.017736 1.57692 @@ -2074,23 +1831,23 @@ Locus3006 1826529 0.86 0.0164259 0.146697 -2.18951 Locus3007 1826943 0.14 0.146697 0.0164259 2.18951 Locus3008 1827927 0.22 0.0803129 0.0163003 1.59475 Locus3009 1828234 0.32 0.0673895 0.0137988 1.58591 -Locus3010 1829344 0.06 0.613274 0.0136961 3.8017 +Locus3010 1829344 0.06 0.542273 0.0136961 3.67866 Locus3011 1829810 0.38 0.0215787 0.027559 -0.244624 Locus3012 1830786 0.82 0.0154554 0.11026 -1.96488 -Locus3013 1830950 0.08 0.880612 0.0149262 4.0775 +Locus3013 1830950 0.08 0.502657 0.0149262 3.51679 Locus3014 1831112 0.82 0.0159101 0.11026 -1.93589 Locus3016 1832771 0.82 0.016143 0.11026 -1.92135 Locus3018 1833575 0.22 0.0227529 0.0211326 0.0738761 -Locus3019 1834412 0.06 0.613738 0.0148114 3.72417 +Locus3019 1834412 0.06 0.544417 0.0148114 3.60432 Locus3020 1834678 0.78 0.0155984 0.0858786 -1.70577 Locus3021 1835134 0.22 0.0227529 0.0199546 0.13123 Locus3022 1835246 0.22 0.0858786 0.0161343 1.67199 Locus3023 1835422 0.22 0.0858786 0.0161343 1.67199 Locus3025 1836402 0.06 0.37471 0.0141025 3.2798 Locus3027 1838234 0.78 0.0224038 0.0220288 0.0168795 -Locus3028 1838639 0.08 0.888695 0.0172712 3.94071 -Locus3032 1841377 0.08 0.888695 0.0171996 3.94487 -Locus3033 1841459 0.06 0.613738 0.0177504 3.54316 +Locus3028 1838639 0.08 0.510671 0.0172712 3.38668 +Locus3032 1841377 0.08 0.510577 0.0171996 3.39066 +Locus3033 1841459 0.06 0.546781 0.0177504 3.42764 Locus3035 1844151 0.18 0.0662921 0.0206142 1.16809 Locus3037 1846536 0.06 0.0592123 0.0190158 1.13586 Locus3039 1848162 0.06 0.0404054 0.0191577 0.746257 @@ -2098,7 +1855,7 @@ Locus3043 1853233 0.06 0.111472 0.0166002 1.90436 Locus3047 1856857 0.06 0.309 0.0165905 2.92451 Locus3048 1858066 0.1 0.110684 0.0164659 1.90539 Locus3049 1858283 0.62 0.0250518 0.0208425 0.183951 -Locus3052 1859767 0.88 0.0131073 0.418547 -3.46362 +Locus3052 1859767 0.88 0.0131073 0.267452 -3.01577 Locus3053 1860193 0.16 0.122968 0.00868322 2.65053 Locus3054 1860520 0.14 0.140017 0.0125723 2.41027 Locus3055 1860618 0.44 0.0450898 0.00881824 1.63183 @@ -2109,7 +1866,7 @@ Locus3062 1865873 0.36 0.0193566 0.0226575 -0.157454 Locus3063 1866718 0.14 0.141571 0.0126382 2.41607 Locus3064 1867743 0.46 0.041589 0.00974934 1.45064 Locus3065 1868327 0.22 0.087497 0.00709151 2.51271 -Locus3067 1868746 0.12 0.192515 0.0110992 2.8533 +Locus3067 1868746 0.12 0.181039 0.0110992 2.79184 Locus3068 1869677 0.06 0.310798 0.00994342 3.44223 Locus3069 1869875 0.52 0.0334624 0.0118047 1.04192 Locus3070 1871935 0.28 0.0216553 0.0186509 0.149357 @@ -2118,18 +1875,18 @@ Locus3072 1872162 0.06 0.310798 0.010354 3.40177 Locus3075 1873261 0.66 0.0212544 0.0190507 0.109462 Locus3077 1873485 0.66 0.0212188 0.0190507 0.107786 Locus3079 1873862 0.26 0.0262383 0.0168188 0.444719 -Locus3080 1874333 0.1 0.537485 0.0140825 3.64197 -Locus3081 1874881 0.1 0.537485 0.0140825 3.64197 +Locus3080 1874333 0.1 0.310735 0.0140825 3.09401 +Locus3081 1874881 0.1 0.310811 0.0140825 3.09425 Locus3084 1878888 0.72 0.0191578 0.0194631 -0.015809 Locus3085 1879346 0.72 0.0191578 0.0194631 -0.015809 Locus3086 1879544 0.28 0.0194631 0.0191578 0.015809 Locus3087 1879638 0.1 0.132557 0.0132909 2.29994 -Locus3088 1880765 0.08 0.888513 0.0135769 4.18118 +Locus3088 1880765 0.08 0.510315 0.0135769 3.62666 Locus3090 1882324 0.08 0.058911 0.0149619 1.37052 Locus3092 1885858 0.22 0.0388963 0.0193898 0.696152 Locus3093 1886970 0.08 0.12199 0.0125847 2.27146 Locus3095 1887181 0.22 0.0848265 0.0120633 1.95044 -Locus3096 1887408 0.1 0.272101 0.0156724 2.85427 +Locus3096 1887408 0.1 0.256692 0.0156724 2.79597 Locus3098 1890285 0.06 0.0164137 0.0143725 0.132797 Locus3099 1890961 0.06 0.0164137 0.0143725 0.132797 Locus3100 1891820 0.16 0.0744325 0.0176828 1.4373 @@ -2138,7 +1895,7 @@ Locus3103 1893713 0.06 0.109771 0.0127792 2.15058 Locus3104 1895050 0.84 0.0163669 0.0767514 -1.54531 Locus3105 1895149 0.16 0.0767514 0.0163669 1.54531 Locus3106 1895179 0.62 0.0251587 0.0160297 0.45076 -Locus3107 1895433 0.08 0.621782 0.00973151 4.15722 +Locus3107 1895433 0.08 0.360969 0.00973151 3.61342 Locus3108 1895973 0.16 0.0893861 0.0126373 1.95631 Locus3109 1896719 0.08 0.0596945 0.0114726 1.64928 Locus3110 1897019 0.62 0.0238199 0.0171463 0.32874 @@ -2155,7 +1912,7 @@ Locus3123 1903696 0.18 0.0538103 0.0111733 1.57194 Locus3124 1904346 0.24 0.0658724 0.0142452 1.5313 Locus3125 1904954 0.12 0.0916249 0.0112713 2.09545 Locus3126 1905193 0.24 0.0658724 0.0141067 1.54107 -Locus3127 1905401 0.08 0.466394 0.0106416 3.78026 +Locus3127 1905401 0.08 0.443592 0.0106416 3.73013 Locus3128 1905817 0.12 0.0971505 0.0113647 2.14575 Locus3129 1906147 0.76 0.0144997 0.0681171 -1.5471 Locus3130 1909040 0.06 0.31487 0.0114202 3.31677 @@ -2170,7 +1927,7 @@ Locus3138 1911493 0.3 0.0674868 0.0100951 1.89988 Locus3140 1914423 0.52 0.0201055 0.024489 -0.197227 Locus3141 1914469 0.42 0.0290853 0.0152113 0.648195 Locus3142 1914521 0.22 0.080959 0.0154651 1.65536 -Locus3143 1916609 0.06 1.75417 0.0140226 4.82908 +Locus3143 1916609 0.06 0.998264 0.0140226 4.26535 Locus3144 1919541 0.34 0.0417096 0.0189124 0.790915 Locus3145 1920129 0.42 0.0283575 0.0243641 0.151782 Locus3147 1922626 0.32 0.0463965 0.0169641 1.00612 @@ -2200,13 +1957,13 @@ Locus3176 1936299 0.18 0.114359 0.0154767 2.00001 Locus3177 1937076 0.26 0.0595457 0.0188254 1.15154 Locus3179 1937630 0.74 0.018919 0.0595457 -1.14658 Locus3180 1937799 0.26 0.0595457 0.018919 1.14658 -Locus3181 1938145 0.06 0.886206 0.0129369 4.22687 +Locus3181 1938145 0.06 0.851972 0.0129369 4.18747 Locus3182 1938550 0.24 0.0699873 0.0171002 1.40922 -Locus3183 1939664 0.08 0.886924 0.0152041 4.0662 -Locus3185 1942195 0.08 0.44968 0.0154265 3.37245 +Locus3183 1939664 0.08 0.508793 0.0152041 3.51048 +Locus3185 1942195 0.08 0.433047 0.0154265 3.33476 Locus3188 1944009 0.62 0.0189741 0.0406332 -0.761511 Locus3189 1944106 0.06 0.20165 0.0134888 2.70467 -Locus3190 1944595 0.12 0.203466 0.0144049 2.64793 +Locus3190 1944595 0.12 0.196968 0.0144049 2.61547 Locus3191 1944815 0.06 0.20165 0.0137913 2.6825 Locus3192 1945613 0.08 0.0578041 0.0147794 1.36382 Locus3194 1948289 0.44 0.0355397 0.0233024 0.422096 @@ -2218,7 +1975,7 @@ Locus3200 1950746 0.44 0.0355397 0.0208264 0.534431 Locus3202 1952603 0.1 0.0322615 0.0159922 0.701773 Locus3208 1955556 0.06 0.107807 0.015503 1.93931 Locus3209 1957444 0.46 0.0336858 0.0232975 0.36873 -Locus3210 1957850 0.06 1.75417 0.0143698 4.80463 +Locus3210 1957850 0.06 0.998223 0.0143698 4.24085 Locus3214 1961195 0.12 0.163406 0.0152549 2.37134 Locus3215 1961457 0.38 0.0430119 0.0183524 0.851714 Locus3216 1961857 0.38 0.0430119 0.0183524 0.851714 @@ -2244,14 +2001,14 @@ Locus3241 1975918 0.6 0.0188699 0.0346095 -0.606559 Locus3242 1977481 0.14 0.107605 0.0124438 2.15724 Locus3243 1977538 0.4 0.0346095 0.0183585 0.634034 Locus3245 1978132 0.18 0.109722 0.0126264 2.16215 -Locus3246 1979851 0.06 1.75417 0.0113876 5.03723 +Locus3246 1979851 0.06 0.998418 0.0113876 4.47365 Locus3248 1980324 0.46 0.0304025 0.0190241 0.468819 -Locus3249 1980490 0.08 0.454577 0.0111319 3.70955 +Locus3249 1980490 0.08 0.444269 0.0111319 3.68661 Locus3250 1980826 0.18 0.109722 0.0117784 2.23167 Locus3252 1981114 0.46 0.0280604 0.0238259 0.163584 -Locus3257 1982978 0.06 1.75417 0.0153456 4.73893 -Locus3261 1985809 0.06 0.886206 0.0162609 3.99818 -Locus3264 1987349 0.06 0.886206 0.0166395 3.97517 +Locus3257 1982978 0.06 0.997811 0.0153456 4.17474 +Locus3261 1985809 0.06 0.867811 0.0162609 3.97721 +Locus3264 1987349 0.06 0.867915 0.0166395 3.95431 Locus3265 1987817 0.24 0.0941527 0.0193476 1.58235 Locus3269 1993519 0.06 0.00980501 0.0180972 -0.612862 Locus3270 1993665 0.7 0.0264661 0.0241125 0.0931314 @@ -2276,7 +2033,7 @@ Locus3297 2004749 0.44 0.0175691 0.0291118 -0.505 Locus3298 2005562 0.12 0.00809565 0.0147987 -0.603213 Locus3302 2009500 0.08 0.0192727 0.0136881 0.342162 Locus3303 2009508 0.56 0.0116868 0.0384393 -1.19062 -Locus3305 2010770 0.08 0.985129 0.0101209 4.57817 +Locus3305 2010770 0.08 0.607072 0.0101209 4.09404 Locus3306 2010965 0.16 0.105175 0.0114675 2.21611 Locus3308 2012194 0.2 0.0816046 0.0120073 1.91637 Locus3309 2012653 0.2 0.0502264 0.0124294 1.39648 @@ -2304,7 +2061,7 @@ Locus3332 2026358 0.08 0.190931 0.00903119 3.05123 Locus3334 2026503 0.18 0.0526201 0.0127261 1.41944 Locus3335 2026545 0.2 0.0413672 0.0133203 1.13319 Locus3336 2026899 0.08 0.08906 0.00955358 2.23239 -Locus3338 2027838 0.06 1.13681 0.00931935 4.80389 +Locus3338 2027838 0.06 0.659295 0.00931935 4.25908 Locus3339 2027899 0.2 0.0422868 0.0129064 1.18675 Locus3340 2028160 0.08 0.0351639 0.00968917 1.28901 Locus3341 2028301 0.22 0.0631044 0.0139207 1.51142 @@ -2313,17 +2070,17 @@ Locus3343 2028374 0.22 0.0631044 0.0139207 1.51142 Locus3344 2029431 0.08 0.08906 0.0109848 2.09279 Locus3345 2029770 0.18 0.0284928 0.0132777 0.763568 Locus3346 2030923 0.26 0.0221308 0.0160427 0.321715 -Locus3347 2031261 0.16 0.315651 0.0114201 3.31926 +Locus3347 2031261 0.16 0.213598 0.0114201 2.92872 Locus3350 2031871 0.26 0.0223253 0.0157352 0.349824 -Locus3351 2033033 0.06 0.886206 0.00783559 4.72827 +Locus3351 2033033 0.06 0.883598 0.00783559 4.72533 Locus3352 2033368 0.06 0.0379011 0.0079534 1.56138 -Locus3353 2033372 0.16 0.315651 0.00980906 3.47133 +Locus3353 2033372 0.16 0.2138 0.00980906 3.08173 Locus3354 2033830 0.26 0.0219516 0.0130766 0.518017 Locus3356 2034228 0.24 0.0831885 0.00573076 2.67526 -Locus3357 2034766 0.16 0.315651 0.0103154 3.421 -Locus3358 2035213 0.06 0.886206 0.00834346 4.66547 +Locus3357 2034766 0.16 0.213867 0.0103154 3.03172 +Locus3358 2035213 0.06 0.883913 0.00834346 4.66288 Locus3360 2036049 0.82 0.012417 0.0473082 -1.33762 -Locus3361 2036296 0.16 0.315651 0.0117747 3.28868 +Locus3361 2036296 0.16 0.213945 0.0117747 2.89976 Locus3362 2036311 0.06 0.0379011 0.00952657 1.3809 Locus3363 2037262 0.26 0.0453781 0.0148012 1.12032 Locus3364 2037591 0.16 0.0433783 0.0111754 1.35624 @@ -2343,14 +2100,14 @@ Locus3383 2046775 0.2 0.0231595 0.0245436 -0.0580456 Locus3384 2048134 0.72 0.0298674 0.0170111 0.562901 Locus3385 2049239 0.68 0.0333594 0.0119213 1.02902 Locus3386 2050983 0.76 0.0265731 0.019158 0.327182 -Locus3388 2051675 0.06 1.15717 0.0166642 4.24047 +Locus3388 2051675 0.06 0.687651 0.0166642 3.72002 Locus3389 2051918 0.72 0.0302104 0.0119419 0.928136 Locus3390 2053067 0.08 0.08906 0.0174954 1.62737 Locus3391 2053265 0.76 0.0270351 0.0145614 0.618759 Locus3392 2053516 0.76 0.0270351 0.0145614 0.618759 Locus3393 2053660 0.08 0.08906 0.018106 1.59307 Locus3395 2056429 0.84 0.0224174 0.025447 -0.126762 -Locus3396 2056522 0.08 0.582842 0.018041 3.47527 +Locus3396 2056522 0.08 0.348911 0.018041 2.96217 Locus3397 2058257 0.68 0.0338534 0.0098122 1.23841 Locus3398 2059282 0.76 0.0270582 0.0141399 0.648991 Locus3399 2059525 0.24 0.0141399 0.0270582 -0.648991 @@ -2368,8 +2125,8 @@ Locus3412 2064653 0.24 0.0113726 0.0247123 -0.77609 Locus3415 2065818 0.7 0.0288742 0.00815542 1.26427 Locus3416 2065860 0.7 0.0288742 0.00815542 1.26427 Locus3417 2065966 0.08 0.0684714 0.0155048 1.48527 -Locus3418 2065967 0.08 0.61319 0.0151011 3.70391 -Locus3419 2066117 0.08 0.61319 0.0151011 3.70391 +Locus3418 2065967 0.08 0.380792 0.0151011 3.22749 +Locus3419 2066117 0.08 0.380871 0.0151011 3.22769 Locus3420 2066857 0.16 0.0416966 0.0188471 0.79406 Locus3421 2066951 0.7 0.0292588 0.00779915 1.32217 Locus3422 2067454 0.06 0.0470207 0.0152863 1.12363 @@ -2386,16 +2143,16 @@ Locus3435 2071445 0.74 0.0196185 0.0167206 0.159834 Locus3436 2071591 0.16 0.0425256 0.0154644 1.01156 Locus3437 2071714 0.06 0.252101 0.0114862 3.08868 Locus3438 2071791 0.06 0.0470207 0.0131955 1.27071 -Locus3439 2072203 0.08 0.61319 0.0135245 3.81417 +Locus3439 2072203 0.08 0.381832 0.0135245 3.34048 Locus3441 2072748 0.06 0.0313279 0.0132582 0.859897 Locus3442 2072974 0.08 0.337542 0.0113508 3.3924 Locus3443 2073384 0.64 0.0252103 0.0076148 1.19716 Locus3444 2073416 0.08 0.110924 0.0131076 2.13565 -Locus3445 2073428 0.08 0.61319 0.0133977 3.82359 +Locus3445 2073428 0.08 0.382071 0.0133977 3.35052 Locus3446 2074583 0.06 0.0313279 0.0131326 0.869413 -Locus3448 2075234 0.08 0.61319 0.013799 3.79408 +Locus3448 2075234 0.08 0.382502 0.013799 3.32214 Locus3449 2075667 0.94 0.0132815 0.027983 -0.745222 -Locus3450 2076094 0.08 0.61319 0.0135914 3.80924 +Locus3450 2076094 0.08 0.382502 0.0135914 3.3373 Locus3451 2076516 0.94 0.0135622 0.027983 -0.724312 Locus3452 2077150 0.6 0.0272771 0.0106548 0.940037 Locus3453 2079244 0.58 0.02848 0.0103946 1.00791 @@ -2404,7 +2161,7 @@ Locus3458 2085654 0.2 0.0252617 0.0172123 0.383661 Locus3459 2088124 0.46 0.0298397 0.0120689 0.905208 Locus3461 2091139 0.24 0.053293 0.00953211 1.72114 Locus3462 2091478 0.06 0.149455 0.00856909 2.85884 -Locus3463 2091924 0.08 0.61319 0.00840292 4.2901 +Locus3463 2091924 0.08 0.38511 0.00840292 3.82495 Locus3464 2092081 0.56 0.0157104 0.0274582 -0.558341 Locus3465 2093606 0.08 0.0752201 0.0115817 1.87099 Locus3466 2094096 0.08 0.0752201 0.0115817 1.87099 @@ -2474,7 +2231,7 @@ Locus3563 2140647 0.8 0.0147686 0.0635978 -1.46008 Locus3564 2140761 0.06 0.0751834 0.0114497 1.88197 Locus3571 2143457 0.14 0.0192269 0.0138692 0.326642 Locus3573 2144282 0.16 0.0902144 0.014938 1.79828 -Locus3574 2145807 0.1 0.601893 0.0138962 3.76846 +Locus3574 2145807 0.1 0.375043 0.0138962 3.29542 Locus3579 2150124 0.16 0.0178289 0.0151772 0.161027 Locus3582 2151032 0.66 0.0212885 0.0138486 0.429985 Locus3583 2151137 0.14 0.125771 0.0123302 2.32241 @@ -2491,7 +2248,7 @@ Locus3602 2158654 0.22 0.0603637 0.011768 1.635 Locus3603 2159199 0.28 0.0357193 0.0124883 1.0509 Locus3605 2162212 0.06 0.0552528 0.0099982 1.70951 Locus3606 2162287 0.54 0.0141323 0.020053 -0.34992 -Locus3607 2162633 0.06 1.15973 0.00848838 4.91725 +Locus3607 2162633 0.06 0.716244 0.00848838 4.43532 Locus3610 2163602 0.18 0.0265889 0.011105 0.873095 Locus3612 2166614 0.3 0.023322 0.0136079 0.538745 Locus3614 2167723 0.3 0.023322 0.0131097 0.576044 @@ -2534,7 +2291,7 @@ Locus3660 2189188 0.28 0.0446517 0.0150705 1.08615 Locus3662 2190073 0.28 0.0446615 0.0150705 1.08637 Locus3664 2191312 0.18 0.03532 0.0187942 0.630905 Locus3669 2195467 0.1 0.0350147 0.0210396 0.509364 -Locus3670 2195778 0.08 0.985129 0.0210746 3.8447 +Locus3670 2195778 0.08 0.606913 0.0210746 3.36032 Locus3672 2198876 0.06 0.0854442 0.0221962 1.34794 Locus3675 2200173 0.06 0.0854442 0.0228282 1.31987 Locus3676 2202275 0.06 0.0895732 0.0224392 1.38425 @@ -2624,7 +2381,7 @@ Locus3798 2285989 0.24 0.0300948 0.0198058 0.418377 Locus3799 2286304 0.78 0.0188052 0.0350319 -0.622128 Locus3803 2287303 0.78 0.0212691 0.0350319 -0.499004 Locus3805 2287773 0.22 0.0350319 0.0207764 0.522442 -Locus3806 2288086 0.08 0.503656 0.0197637 3.23805 +Locus3806 2288086 0.08 0.497468 0.0197637 3.22568 Locus3811 2294276 0.08 0.0695173 0.0226589 1.12102 Locus3815 2295532 0.08 0.152095 0.0242464 1.83624 Locus3819 2307558 0.42 0.0399049 0.0276032 0.368566 @@ -2703,13 +2460,13 @@ Locus3936 2390492 0.2 0.0382976 0.0368105 0.0396032 Locus3937 2390641 0.2 0.0382976 0.0368105 0.0396032 Locus3938 2391048 0.12 0.0900207 0.0300218 1.09812 Locus3940 2393709 0.12 0.0900207 0.0303524 1.08716 -Locus3942 2397490 0.06 1.30175 0.0290958 3.80087 +Locus3942 2397490 0.06 0.85884 0.0290958 3.38499 Locus3944 2398949 0.7 0.0392447 0.0654123 -0.510893 -Locus3945 2399029 0.06 1.30175 0.0291362 3.79948 +Locus3945 2399029 0.06 0.858394 0.0291362 3.38308 Locus3947 2400158 0.06 0.177635 0.0269809 1.8846 -Locus3948 2400914 0.06 1.30175 0.0282734 3.82954 +Locus3948 2400914 0.06 0.858349 0.0282734 3.41309 Locus3950 2401593 0.06 0.0194691 0.0283023 -0.374112 -Locus3953 2404458 0.06 1.30175 0.0301648 3.76479 +Locus3953 2404458 0.06 0.858914 0.0301648 3.34899 Locus3957 2413645 0.06 0.131165 0.0289473 1.51098 Locus3959 2414709 0.6 0.0542157 0.0302309 0.584108 Locus3960 2414740 0.4 0.0302309 0.0542157 -0.584108 @@ -2740,7 +2497,7 @@ Locus3987 2424490 0.9 0.026421 0.0142652 0.616337 Locus3988 2424624 0.1 0.0142652 0.026421 -0.616337 Locus3989 2425172 0.62 0.0506718 0.0290446 0.556536 Locus3990 2425834 0.1 0.178236 0.0232309 2.03763 -Locus3991 2426188 0.08 0.661696 0.0216359 3.42045 +Locus3991 2426188 0.08 0.440676 0.0216359 3.01396 Locus3992 2426225 0.9 0.0239805 0.0142652 0.519418 Locus3993 2426465 0.54 0.0199456 0.0736855 -1.3068 Locus3995 2428912 0.14 0.0574177 0.0278973 0.721822 @@ -2798,7 +2555,7 @@ Locus4087 2508129 0.1 0.0948161 0.0451366 0.742245 Locus4088 2508340 0.88 0.0486354 0.0207791 0.850403 Locus4090 2512676 0.06 0.0193512 0.0421742 -0.779054 Locus4091 2512737 0.06 0.0193512 0.0421742 -0.779054 -Locus4093 2513452 0.06 1.26527 0.0391809 3.47485 +Locus4093 2513452 0.06 0.822177 0.0391809 3.04377 Locus4094 2513504 0.76 0.0601491 0.0146026 1.41563 Locus4096 2513667 0.12 0.0658258 0.0455673 0.367822 Locus4097 2518492 0.14 0.00834462 0.0483933 -1.75774 @@ -2821,7 +2578,7 @@ Locus4121 2531863 0.7 0.0654564 0.03054 0.762348 Locus4124 2533937 0.3 0.0304863 0.0645936 -0.750839 Locus4125 2534855 0.16 0.092296 0.042031 0.786593 Locus4128 2536931 0.7 0.0645015 0.0314736 0.717538 -Locus4129 2537383 0.06 1.26527 0.0329439 3.64824 +Locus4129 2537383 0.06 0.822312 0.0329439 3.21731 Locus4130 2537894 0.22 0.0523217 0.0527105 -0.00740318 Locus4131 2538282 0.3 0.0310375 0.0662146 -0.757705 Locus4133 2538925 0.06 0.149751 0.03473 1.46137 @@ -2868,12 +2625,12 @@ Locus4196 2566262 0.84 0.0481699 0.0903801 -0.629289 Locus4197 2566265 0.12 0.14444 0.0437608 1.19412 Locus4198 2566524 0.84 0.0481699 0.0906749 -0.632546 Locus4202 2571938 0.12 0.14444 0.0445908 1.17533 -Locus4203 2571943 0.06 1.26527 0.0369566 3.5333 -Locus4204 2572793 0.06 1.26527 0.0369566 3.5333 +Locus4203 2571943 0.06 0.821867 0.0369566 3.10183 +Locus4204 2572793 0.06 0.822162 0.0369566 3.10219 Locus4206 2573309 0.12 0.14444 0.0412434 1.25337 Locus4207 2574587 0.16 0.0443696 0.0440705 0.0067645 Locus4212 2583114 0.12 0.14444 0.0381737 1.33071 -Locus4215 2584607 0.08 0.638971 0.0335227 2.94764 +Locus4215 2584607 0.08 0.417646 0.0335227 2.52241 Locus4216 2584988 0.7 0.0560974 0.0300698 0.623568 Locus4217 2585402 0.7 0.0560974 0.0300698 0.623568 Locus4220 2586323 0.12 0.14444 0.0352095 1.41155 @@ -2885,19 +2642,19 @@ Locus4226 2590398 0.18 0.0543296 0.0291689 0.621965 Locus4228 2592140 0.2 0.0365376 0.028886 0.234985 Locus4229 2592202 0.12 0.139583 0.0243679 1.74539 Locus4231 2595619 0.12 0.139583 0.0243675 1.74541 -Locus4232 2595765 0.1 0.370343 0.0215087 2.84597 -Locus4233 2596168 0.1 0.370343 0.0215087 2.84597 +Locus4232 2595765 0.1 0.335938 0.0215087 2.74847 +Locus4233 2596168 0.1 0.335849 0.0215087 2.7482 Locus4234 2596187 0.58 0.0518454 0.0222027 0.848053 Locus4235 2596421 0.58 0.0518454 0.0222027 0.848053 -Locus4236 2596426 0.1 0.370343 0.0208108 2.87896 +Locus4236 2596426 0.1 0.335788 0.0208108 2.78101 Locus4237 2596932 0.7 0.0349649 0.0318937 0.0919361 Locus4238 2597103 0.3 0.0318937 0.0349649 -0.0919361 Locus4240 2598125 0.3 0.0318937 0.0346187 -0.0819855 Locus4241 2598307 0.7 0.0346187 0.0318937 0.0819855 -Locus4242 2598423 0.06 1.26527 0.0196215 4.16642 +Locus4242 2598423 0.06 0.822209 0.0196215 3.73537 Locus4243 2599287 0.3 0.03281 0.0346187 -0.0536615 -Locus4244 2599356 0.1 0.370343 0.0218963 2.82811 -Locus4245 2599813 0.1 0.370343 0.0218963 2.82811 +Locus4244 2599356 0.1 0.335527 0.0218963 2.72938 +Locus4245 2599813 0.1 0.335477 0.0218963 2.72923 Locus4246 2600795 0.2 0.169764 0.0156503 2.38392 Locus4247 2601463 0.22 0.0428656 0.0213164 0.698592 Locus4248 2603302 0.1 0.203378 0.0162173 2.52899 @@ -2916,14 +2673,14 @@ Locus4266 2618765 0.14 0.07626 0.0199499 1.34093 Locus4268 2620183 0.86 0.0192746 0.07626 -1.37536 Locus4271 2621352 0.54 0.0386883 0.0204022 0.639894 Locus4272 2621587 0.14 0.0865236 0.0170927 1.62177 -Locus4273 2622144 0.1 0.301991 0.0158266 2.94871 +Locus4273 2622144 0.1 0.264923 0.0158266 2.81775 Locus4274 2622316 0.48 0.0500617 0.0177272 1.03816 Locus4275 2623463 0.12 0.129161 0.0161434 2.07955 Locus4279 2626389 0.56 0.0422173 0.0247155 0.535399 Locus4280 2626913 0.1 0.0699978 0.0206214 1.22213 Locus4282 2628984 0.1 0.203378 0.0192608 2.35699 Locus4283 2630177 0.1 0.203378 0.0192608 2.35699 -Locus4284 2631382 0.1 0.301991 0.0200864 2.71035 +Locus4284 2631382 0.1 0.26394 0.0200864 2.57568 Locus4285 2632329 0.54 0.044391 0.0210781 0.744802 Locus4287 2635376 0.1 0.203378 0.020003 2.31918 Locus4288 2635642 0.18 0.0777054 0.0245591 1.15184 @@ -2931,38 +2688,38 @@ Locus4291 2640213 0.1 0.203378 0.0209548 2.2727 Locus4292 2641504 0.56 0.0444934 0.0277799 0.471027 Locus4294 2641763 0.12 0.160215 0.020279 2.06693 Locus4297 2644296 0.3 0.0442951 0.0301408 0.384995 -Locus4299 2645090 0.08 0.483953 0.0191118 3.23168 +Locus4299 2645090 0.08 0.418264 0.0191118 3.08581 Locus4303 2647846 0.54 0.0412383 0.0238359 0.548177 Locus4305 2648350 0.54 0.0412383 0.0238282 0.5485 Locus4306 2648787 0.34 0.04093 0.0278134 0.386346 -Locus4307 2648993 0.1 0.232681 0.0193495 2.487 -Locus4309 2649833 0.1 0.232681 0.018627 2.52506 -Locus4310 2650021 0.08 0.384758 0.017294 3.10226 -Locus4311 2650388 0.1 0.230979 0.018627 2.51771 +Locus4307 2648993 0.1 0.192885 0.0193495 2.29943 +Locus4309 2649833 0.1 0.192885 0.018627 2.33748 +Locus4310 2650021 0.08 0.318431 0.017294 2.91305 +Locus4311 2650388 0.1 0.191183 0.018627 2.32862 Locus4314 2650954 0.12 0.160215 0.017766 2.19923 -Locus4316 2653088 0.08 0.384758 0.0171174 3.11252 +Locus4316 2653088 0.08 0.317838 0.0171174 2.92145 Locus4318 2653338 0.12 0.160215 0.0175725 2.21019 Locus4319 2653525 0.54 0.0393699 0.0247904 0.462545 -Locus4320 2653612 0.88 0.0185662 0.154635 -2.11972 +Locus4320 2653612 0.88 0.0185662 0.127867 -1.92965 Locus4323 2654385 0.54 0.0393169 0.0260995 0.409739 Locus4325 2656702 0.06 0.0348564 0.0179225 0.665182 Locus4328 2658083 0.58 0.0375652 0.0287054 0.268992 -Locus4329 2658252 0.1 0.235086 0.0243949 2.26558 -Locus4330 2659892 0.9 0.0243949 0.235086 -2.26558 -Locus4332 2662270 0.1 0.235086 0.0242904 2.26987 -Locus4333 2662290 0.9 0.0242904 0.235086 -2.26987 -Locus4337 2663826 0.88 0.0246765 0.157279 -1.85217 +Locus4329 2658252 0.1 0.194358 0.0243949 2.07533 +Locus4330 2659892 0.9 0.0243949 0.194193 -2.07448 +Locus4332 2662270 0.1 0.193979 0.0242904 2.07767 +Locus4333 2662290 0.9 0.0242904 0.193979 -2.07767 +Locus4337 2663826 0.88 0.0246765 0.129755 -1.6598 Locus4338 2663923 0.16 0.134665 0.0204982 1.88246 -Locus4341 2666027 0.1 0.235086 0.0239001 2.28607 -Locus4342 2666334 0.08 0.384758 0.0228734 2.82264 -Locus4343 2666597 0.1 0.230955 0.0239001 2.26834 +Locus4341 2666027 0.1 0.193643 0.0239001 2.09213 +Locus4342 2666334 0.08 0.315686 0.0228734 2.62477 +Locus4343 2666597 0.1 0.189512 0.0239001 2.07057 Locus4357 2671508 0.16 0.0803092 0.0243474 1.19346 Locus4358 2671603 0.18 0.0628235 0.0258034 0.889823 Locus4360 2673885 0.8 0.0269094 0.047395 -0.566038 -Locus4361 2674578 0.06 0.6569 0.0191927 3.533 +Locus4361 2674578 0.06 0.515669 0.0191927 3.29094 Locus4362 2674819 0.22 0.0396192 0.0279794 0.347846 Locus4363 2674863 0.2 0.0480775 0.0262223 0.606205 -Locus4364 2674935 0.12 0.320185 0.0215338 2.69927 +Locus4364 2674935 0.12 0.231629 0.0215338 2.37551 Locus4365 2674970 0.78 0.0279794 0.0438507 -0.449322 Locus4367 2676825 0.22 0.0440316 0.0279794 0.45344 Locus4368 2677081 0.78 0.0279794 0.0440316 -0.45344 @@ -3076,7 +2833,7 @@ Locus4508 2745797 0.12 0.143335 0.0108942 2.57696 Locus4510 2746331 0.06 0.125411 0.0109475 2.43849 Locus4511 2746907 0.92 0.0121983 0.0995026 -2.09889 Locus4512 2747109 0.92 0.0121983 0.0995026 -2.09889 -Locus4513 2747193 0.18 0.275405 0.0135031 3.01532 +Locus4513 2747193 0.18 0.187769 0.0135031 2.63229 Locus4514 2748805 0.26 0.0413593 0.0162307 0.935394 Locus4515 2749258 0.6 0.0204288 0.0190281 0.0710279 Locus4517 2750334 0.6 0.0204288 0.0191146 0.0664899 @@ -3084,7 +2841,7 @@ Locus4518 2750637 0.08 0.0547295 0.011119 1.59374 Locus4523 2753487 0.14 0.0460361 0.0129562 1.26785 Locus4524 2754499 0.24 0.0473247 0.0152039 1.13548 Locus4525 2754722 0.24 0.0473247 0.0152039 1.13548 -Locus4527 2756735 0.16 0.351284 0.0126495 3.32398 +Locus4527 2756735 0.16 0.238278 0.0126495 2.93582 Locus4528 2756808 0.58 0.0221444 0.0166694 0.284012 Locus4530 2758060 0.58 0.0221444 0.0166093 0.287623 Locus4532 2759240 0.84 0.0127998 0.0474769 -1.31081 @@ -3093,7 +2850,7 @@ Locus4534 2760519 0.56 0.0235806 0.014354 0.496397 Locus4538 2763167 0.82 0.0131651 0.0361936 -1.01131 Locus4539 2763188 0.18 0.0361936 0.0131651 1.01131 Locus4540 2763212 0.56 0.0235806 0.0134821 0.559064 -Locus4544 2763639 0.16 0.351284 0.0111646 3.44885 +Locus4544 2763639 0.16 0.238029 0.0111646 3.05964 Locus4548 2765135 0.14 0.023172 0.0122321 0.638884 Locus4550 2766610 0.12 0.0928433 0.0106647 2.16397 Locus4551 2766991 0.7 0.0151286 0.0250853 -0.505694 @@ -3103,8 +2860,8 @@ Locus4554 2767395 0.3 0.0250853 0.0147051 0.534087 Locus4555 2767815 0.14 0.0698938 0.00988409 1.95605 Locus4556 2768821 0.06 0.168224 0.00956375 2.86732 Locus4557 2769117 0.12 0.0928433 0.0105981 2.17024 -Locus4558 2769261 0.06 0.666313 0.00975512 4.22397 -Locus4560 2770152 0.16 0.345001 0.0117649 3.37843 +Locus4558 2769261 0.06 0.493676 0.00975512 3.92409 +Locus4560 2770152 0.16 0.231484 0.0117649 2.97939 Locus4564 2774667 0.12 0.0928433 0.0118198 2.06114 Locus4565 2774686 0.06 0.100279 0.010582 2.2488 Locus4566 2775195 0.1 0.0411775 0.0112781 1.29503 @@ -3116,14 +2873,14 @@ Locus4571 2776357 0.76 0.0164743 0.0300388 -0.600688 Locus4573 2776852 0.76 0.0164743 0.0295108 -0.582953 Locus4575 2777348 0.14 0.066622 0.0123052 1.68901 Locus4576 2777378 0.76 0.0158016 0.0295108 -0.624642 -Locus4578 2778638 0.78 0.016684 0.125027 -2.01408 -Locus4579 2778806 0.22 0.125027 0.016684 2.01408 -Locus4580 2779268 0.22 0.125027 0.016684 2.01408 +Locus4578 2778638 0.78 0.016684 0.0961919 -1.75189 +Locus4579 2778806 0.22 0.0961858 0.016684 1.75183 +Locus4580 2779268 0.22 0.0961544 0.016684 1.7515 Locus4583 2780864 0.44 0.012728 0.0273956 -0.766578 Locus4584 2780975 0.08 0.042843 0.0118558 1.28472 Locus4585 2782223 0.22 0.0218562 0.0163828 0.288248 Locus4586 2782232 0.58 0.0258886 0.0148415 0.556373 -Locus4589 2784942 0.16 0.345001 0.0170816 3.00554 +Locus4589 2784942 0.16 0.231222 0.0170816 2.60538 Locus4591 2786828 0.12 0.0621615 0.0196132 1.15353 Locus4593 2789727 0.06 0.0559889 0.0194318 1.05824 Locus4594 2789849 0.12 0.0244676 0.0213143 0.137974 @@ -3132,7 +2889,7 @@ Locus4602 2800269 0.26 0.0350819 0.0217944 0.476033 Locus4604 2803725 0.12 0.0229227 0.0201008 0.131366 Locus4606 2805400 0.1 0.0306634 0.0194251 0.456501 Locus4612 2808708 0.42 0.02384 0.0201753 0.166909 -Locus4614 2811169 0.06 0.666313 0.0108531 4.11731 +Locus4614 2811169 0.06 0.479645 0.0108531 3.7886 Locus4616 2811254 0.26 0.0401778 0.0116488 1.23811 Locus4618 2812558 0.24 0.0412964 0.0120487 1.23182 Locus4620 2813888 0.08 0.0714892 0.0116142 1.81732 @@ -3148,8 +2905,8 @@ Locus4632 2824343 0.08 0.0510831 0.00865765 1.77501 Locus4633 2824425 0.26 0.0163794 0.0132742 0.210198 Locus4635 2824667 0.2 0.0727982 0.00918981 2.0696 Locus4639 2826493 0.62 0.0170769 0.0151768 0.117959 -Locus4640 2826515 0.1 0.543723 0.0106366 3.93414 -Locus4642 2829384 0.06 0.666313 0.0092162 4.2808 +Locus4640 2826515 0.1 0.353171 0.0106366 3.50265 +Locus4642 2829384 0.06 0.473483 0.0092162 3.93915 Locus4643 2830220 0.18 0.0705616 0.0111847 1.84194 Locus4644 2830277 0.7 0.0132273 0.0222635 -0.520668 Locus4645 2830529 0.82 0.0108938 0.0705616 -1.86829 @@ -3164,7 +2921,7 @@ Locus4655 2834855 0.12 0.0541119 0.0101349 1.67507 Locus4656 2835046 0.14 0.110202 0.00958485 2.44213 Locus4657 2835334 0.12 0.0541119 0.0104849 1.64112 Locus4658 2837207 0.24 0.0374667 0.0115934 1.17301 -Locus4659 2837237 0.1 0.559598 0.0107402 3.95322 +Locus4659 2837237 0.1 0.368087 0.0107402 3.53432 Locus4660 2838715 0.14 0.110202 0.0117636 2.2373 Locus4665 2841513 0.08 0.212039 0.0127756 2.80923 Locus4666 2842200 0.46 0.0368489 0.0202717 0.597601 @@ -3174,7 +2931,7 @@ Locus4673 2849124 0.06 0.0510087 0.0148628 1.23313 Locus4674 2850037 0.36 0.0491283 0.016988 1.06193 Locus4675 2853525 0.06 0.123818 0.0139653 2.18224 Locus4676 2853698 0.06 0.0510087 0.0144807 1.25918 -Locus4678 2853962 0.1 0.474314 0.0159975 3.38944 +Locus4678 2853962 0.1 0.247667 0.0159975 2.73965 Locus4679 2854783 0.36 0.0491283 0.0206276 0.867802 Locus4680 2856554 0.1 0.054464 0.0185369 1.07778 Locus4683 2865677 0.28 0.0855944 0.0179954 1.5595 @@ -3242,11 +2999,11 @@ Locus4778 2918380 0.1 0.0644009 0.0230427 1.02778 Locus4779 2918698 0.1 0.0644009 0.0230427 1.02778 Locus4780 2919279 0.1 0.0644009 0.0230427 1.02778 Locus4781 2919444 0.56 0.0370087 0.0204132 0.594971 -Locus4783 2919800 0.22 0.226481 0.0121749 2.92329 +Locus4783 2919800 0.22 0.189956 0.0121749 2.74742 Locus4784 2921265 0.9 0.015514 0.0644009 -1.42339 Locus4786 2922537 0.66 0.0233122 0.0297553 -0.244032 Locus4787 2923489 0.08 0.0915547 0.0152405 1.79298 -Locus4788 2924297 0.22 0.226481 0.0133254 2.83299 +Locus4788 2924297 0.22 0.189722 0.0133254 2.65589 Locus4790 2927510 0.2 0.0377299 0.0183234 0.722272 Locus4791 2927936 0.42 0.0265402 0.0246532 0.0737537 Locus4792 2928644 0.58 0.0246532 0.0265402 -0.0737537 @@ -3499,7 +3256,7 @@ Locus5133 3118823 0.24 0.0789125 0.0121537 1.8707 Locus5134 3119529 0.44 0.0177978 0.0212067 -0.175243 Locus5135 3119856 0.56 0.0212067 0.0177978 0.175243 Locus5137 3121146 0.48 0.0222769 0.0150597 0.391531 -Locus5138 3121322 0.06 1.77698 0.0074682 5.47202 +Locus5138 3121322 0.06 1.0205 0.0074682 4.91739 Locus5139 3121382 0.08 0.129353 0.00793101 2.79176 Locus5140 3121484 0.52 0.0159513 0.020529 -0.252297 Locus5141 3122030 0.28 0.0303653 0.0112314 0.99459 @@ -3527,7 +3284,7 @@ Locus5178 3138789 0.26 0.0254563 0.00996942 0.937442 Locus5179 3139849 0.18 0.0573298 0.00851427 1.90708 Locus5180 3141324 0.46 0.0172539 0.0157439 0.0915848 Locus5181 3141515 0.06 0.0387077 0.00903064 1.45542 -Locus5182 3142411 0.06 1.77698 0.00922537 5.26071 +Locus5182 3142411 0.06 1.02058 0.00922537 4.70617 Locus5183 3142677 0.2 0.0978225 0.0126693 2.04397 Locus5184 3144226 0.34 0.025341 0.0147228 0.543029 Locus5185 3144456 0.2 0.0978225 0.0115467 2.13675 @@ -3539,7 +3296,7 @@ Locus5191 3147326 0.46 0.0249806 0.0157927 0.458552 Locus5192 3149577 0.46 0.0249806 0.0157927 0.458552 Locus5193 3149722 0.16 0.15876 0.0107434 2.6931 Locus5194 3150193 0.46 0.0249806 0.0149692 0.512103 -Locus5195 3151272 0.12 0.403505 0.0120545 3.51075 +Locus5195 3151272 0.12 0.314831 0.0120545 3.2626 Locus5196 3153030 0.18 0.119818 0.0139368 2.15144 Locus5198 3155010 0.22 0.0476871 0.0111206 1.45586 Locus5200 3156125 0.22 0.0391237 0.0133835 1.0727 @@ -3569,7 +3326,7 @@ Locus5239 3175653 0.3 0.0120151 0.0254571 -0.750835 Locus5240 3178340 0.84 0.020572 0.0581496 -1.03909 Locus5241 3179457 0.06 0.13996 0.0162049 2.15604 Locus5242 3180395 0.16 0.0581496 0.020927 1.02198 -Locus5243 3181083 0.06 1.77698 0.014919 4.78004 +Locus5243 3181083 0.06 1.0217 0.014919 4.22659 Locus5244 3181785 0.16 0.0581496 0.0203887 1.04804 Locus5246 3184028 0.82 0.0209213 0.0509914 -0.890888 Locus5248 3184481 0.82 0.0196808 0.0509914 -0.952013 @@ -3623,16 +3380,16 @@ Locus5359 3263055 0.08 0.106378 0.010991 2.26993 Locus5360 3264046 0.28 0.0173529 0.0141658 0.202933 Locus5362 3264435 0.56 0.0190755 0.00998667 0.647156 Locus5363 3264450 0.56 0.0190755 0.00998667 0.647156 -Locus5364 3264804 0.06 1.77698 0.009171 5.26662 +Locus5364 3264804 0.06 1.0211 0.009171 4.71258 Locus5365 3264980 0.08 0.106378 0.00957933 2.4074 Locus5366 3265512 0.68 0.0132121 0.0363824 -1.01295 Locus5367 3266940 0.38 0.0271271 0.015371 0.56805 Locus5369 3267354 0.06 0.23149 0.0108225 3.06291 -Locus5370 3267809 0.08 0.896586 0.0110615 4.39512 -Locus5371 3267833 0.1 0.410604 0.0108085 3.6373 +Locus5370 3267809 0.08 0.518456 0.0110615 3.84738 +Locus5371 3267833 0.1 0.277626 0.0108085 3.24594 Locus5372 3268599 0.4 0.0209563 0.0171139 0.202552 -Locus5374 3269916 0.08 0.896586 0.010838 4.41554 -Locus5375 3270127 0.08 0.896586 0.010838 4.41554 +Locus5374 3269916 0.08 0.518381 0.010838 3.86765 +Locus5375 3270127 0.08 0.518449 0.010838 3.86778 Locus5376 3270407 0.18 0.0583752 0.0130439 1.49857 Locus5377 3271077 0.6 0.0196041 0.0226168 -0.142959 Locus5378 3272249 0.6 0.0196041 0.0226168 -0.142959 @@ -3650,27 +3407,27 @@ Locus5403 3290369 0.34 0.029737 0.0148158 0.6967 Locus5405 3291298 0.34 0.0290218 0.0150724 0.655183 Locus5406 3291611 0.06 0.136523 0.00972183 2.64212 Locus5408 3293067 0.68 0.0139845 0.0300625 -0.765332 -Locus5409 3293312 0.12 0.386836 0.0116843 3.49975 -Locus5413 3296682 0.06 1.77698 0.011179 5.06863 -Locus5414 3296863 0.08 0.699106 0.0110101 4.15099 +Locus5409 3293312 0.12 0.235615 0.0116843 3.00395 +Locus5413 3296682 0.06 1.021 0.011179 4.5145 +Locus5414 3296863 0.08 0.477616 0.0110101 3.77 Locus5416 3297971 0.18 0.094253 0.00987316 2.25616 Locus5417 3298850 0.2 0.0364536 0.0148668 0.896906 Locus5418 3299109 0.18 0.0325312 0.0168753 0.65635 -Locus5422 3307867 0.12 0.402161 0.0159917 3.22478 +Locus5422 3307867 0.12 0.250956 0.0159917 2.75321 Locus5425 3309568 0.16 0.0990384 0.0150066 1.88702 Locus5428 3312587 0.14 0.11021 0.0142346 2.04671 Locus5429 3312755 0.16 0.0990384 0.0148078 1.90036 -Locus5430 3312962 0.12 0.402161 0.0138844 3.36609 -Locus5432 3313157 0.08 0.699106 0.0126274 4.01394 -Locus5433 3313230 0.88 0.0143782 0.402161 -3.33114 -Locus5434 3313391 0.88 0.0143782 0.402161 -3.33114 +Locus5430 3312962 0.12 0.250947 0.0138844 2.89448 +Locus5432 3313157 0.08 0.477569 0.0126274 3.63284 +Locus5433 3313230 0.88 0.0143782 0.251006 -2.85977 +Locus5434 3313391 0.88 0.0143782 0.251006 -2.85977 Locus5435 3314986 0.14 0.0534882 0.0136894 1.36284 Locus5438 3317657 0.1 0.101835 0.0107317 2.25015 Locus5440 3318150 0.66 0.0142631 0.0213842 -0.404979 Locus5443 3319519 0.2 0.0404708 0.0105475 1.34469 -Locus5444 3319632 0.12 0.402161 0.0111433 3.58602 +Locus5444 3319632 0.12 0.25097 0.0111433 3.1145 Locus5446 3320940 0.72 0.0148094 0.0272939 -0.611401 -Locus5447 3321277 0.12 0.402161 0.0106799 3.62849 +Locus5447 3321277 0.12 0.251151 0.0106799 3.15769 Locus5448 3322206 0.14 0.0534882 0.011111 1.57152 Locus5450 3322836 0.36 0.0209343 0.0168739 0.215622 Locus5453 3324015 0.74 0.013325 0.0411327 -1.12716 @@ -3721,7 +3478,7 @@ Locus5517 3366102 0.22 0.0303935 0.0117021 0.95446 Locus5520 3367438 0.06 0.174536 0.00848335 3.02403 Locus5521 3367672 0.22 0.0297479 0.0123578 0.878473 Locus5522 3367835 0.08 0.230247 0.00848807 3.30049 -Locus5523 3369709 0.08 0.699106 0.00906914 4.34492 +Locus5523 3369709 0.08 0.477489 0.00906914 3.96366 Locus5524 3369772 0.2 0.0839595 0.0113522 2.00092 Locus5525 3369941 0.2 0.0839595 0.0113522 2.00092 Locus5526 3370021 0.22 0.0297479 0.0137115 0.774524 @@ -3737,13 +3494,13 @@ Locus5539 3376055 0.12 0.0200037 0.0145026 0.321588 Locus5540 3376963 0.08 0.0333037 0.0134523 0.906516 Locus5541 3377852 0.1 0.0933393 0.0133517 1.9446 Locus5542 3378145 0.88 0.0152335 0.0211883 -0.329953 -Locus5543 3379495 0.06 1.77698 0.0123265 4.97092 +Locus5543 3379495 0.06 1.02101 0.0123265 4.4168 Locus5544 3380832 0.64 0.0182594 0.0249486 -0.312134 Locus5545 3380853 0.08 0.0333037 0.010971 1.11042 Locus5546 3381097 0.12 0.129568 0.0107254 2.49159 Locus5548 3382328 0.64 0.0182152 0.0249486 -0.314559 Locus5549 3385310 0.46 0.0179663 0.0267568 -0.398291 -Locus5550 3385381 0.06 1.77698 0.013696 4.86557 +Locus5550 3385381 0.06 1.02061 0.013696 4.31106 Locus5553 3389913 0.1 0.0352279 0.0154012 0.827389 Locus5554 3391003 0.06 0.136523 0.0127899 2.36783 Locus5555 3391445 0.06 0.254052 0.012747 2.99224 @@ -3760,7 +3517,7 @@ Locus5565 3397481 0.84 0.015398 0.0787502 -1.63204 Locus5566 3399048 0.6 0.0264145 0.0179448 0.386615 Locus5568 3402646 0.44 0.0252418 0.0255185 -0.0108988 Locus5569 3403866 0.38 0.0428936 0.0166905 0.943885 -Locus5570 3405794 0.06 1.77698 0.0121432 4.9859 +Locus5570 3405794 0.06 1.02054 0.0121432 4.43133 Locus5572 3407020 0.1 0.058737 0.0133775 1.4795 Locus5573 3407141 0.1 0.058737 0.0133775 1.4795 Locus5574 3408222 0.28 0.0754736 0.0133126 1.73507 @@ -3862,7 +3619,7 @@ Locus5702 3482576 0.12 0.0455646 0.0174016 0.962568 Locus5703 3482628 0.06 0.108147 0.0165331 1.87813 Locus5704 3482772 0.86 0.01831 0.101572 -1.71332 Locus5706 3485110 0.24 0.0405409 0.0248412 0.489808 -Locus5707 3486143 0.9 0.018103 0.366898 -3.00901 +Locus5707 3486143 0.9 0.018103 0.231449 -2.54829 Locus5708 3487077 0.06 0.108147 0.0166932 1.86849 Locus5709 3488290 0.32 0.0861118 0.0158295 1.69377 Locus5722 3498536 0.06 0.104446 0.0206316 1.62185 @@ -3937,7 +3694,7 @@ Locus5836 3597282 0.4 0.0314264 0.0281058 0.111673 Locus5837 3599409 0.6 0.0281058 0.0314264 -0.111673 Locus5842 3601676 0.16 0.137989 0.0159566 2.1573 Locus5846 3602512 0.16 0.0316701 0.0172423 0.608007 -Locus5847 3603594 0.14 0.477539 0.0118778 3.69398 +Locus5847 3603594 0.14 0.337205 0.0118778 3.34602 Locus5849 3606225 0.62 0.0161779 0.0345938 -0.760026 Locus5851 3606423 0.14 0.0349428 0.0135777 0.945284 Locus5853 3608121 0.42 0.0343366 0.0171135 0.696342 @@ -3965,7 +3722,7 @@ Locus5890 3635055 0.58 0.0156728 0.0201049 -0.249033 Locus5892 3635600 0.76 0.00970695 0.0337637 -1.24654 Locus5893 3636000 0.14 0.0575156 0.00789274 1.98611 Locus5894 3636002 0.24 0.0337637 0.0104031 1.17728 -Locus5896 3636518 0.14 0.468338 0.00668369 4.24952 +Locus5896 3636518 0.14 0.324865 0.00668369 3.88374 Locus5898 3636768 0.76 0.0108979 0.0322529 -1.08504 Locus5899 3637024 0.24 0.0322529 0.0108979 1.08504 Locus5900 3637763 0.2 0.0596252 0.0106711 1.72054 @@ -4013,9 +3770,9 @@ Locus5959 3680969 0.46 0.0288411 0.0201587 0.358165 Locus5960 3682035 0.46 0.0288411 0.0201587 0.358165 Locus5961 3683487 0.46 0.0288411 0.0201587 0.358165 Locus5964 3684456 0.46 0.0271905 0.0193897 0.338125 -Locus5966 3684720 0.06 1.82006 0.0102637 5.17801 +Locus5966 3684720 0.06 1.06358 0.0102637 4.64077 Locus5967 3685937 0.44 0.028443 0.0176599 0.476604 -Locus5968 3685939 0.06 1.1125 0.012521 4.48696 +Locus5968 3685939 0.06 0.594112 0.012521 3.85966 Locus5973 3691058 0.08 0.185192 0.0122992 2.71185 Locus5974 3691222 0.22 0.0612977 0.0132502 1.53173 Locus5975 3691996 0.14 0.0487403 0.010007 1.58322 @@ -4068,7 +3825,7 @@ Locus6048 3738315 0.06 0.152704 0.0120254 2.54148 Locus6049 3738690 0.1 0.230089 0.0130618 2.86878 Locus6050 3739211 0.1 0.230089 0.0130618 2.86878 Locus6053 3740180 0.1 0.230089 0.0133137 2.84968 -Locus6058 3744312 0.1 0.761302 0.0134792 4.03389 +Locus6058 3744312 0.1 0.534361 0.0134792 3.67993 Locus6061 3746351 0.1 0.230089 0.0147135 2.7497 Locus6062 3746575 0.08 0.167286 0.0154369 2.38294 Locus6068 3752012 0.32 0.0402242 0.0139357 1.06001 @@ -4110,7 +3867,7 @@ Locus6109 3770783 0.08 0.0728849 0.00932101 2.05661 Locus6111 3771218 0.46 0.032016 0.0106936 1.09659 Locus6113 3773741 0.08 0.0415645 0.00801679 1.64571 Locus6114 3773866 0.08 0.0612026 0.00772226 2.07008 -Locus6115 3774027 0.06 1.1669 0.00731558 5.0721 +Locus6115 3774027 0.06 0.619275 0.00731558 4.43854 Locus6116 3774069 0.92 0.00807805 0.0612026 -2.02504 Locus6117 3775355 0.3 0.0283876 0.0115657 0.897908 Locus6118 3775519 0.08 0.130936 0.00783145 2.81656 @@ -4122,22 +3879,22 @@ Locus6126 3779253 0.18 0.0473289 0.0135556 1.25032 Locus6127 3780569 0.18 0.134508 0.00958661 2.64126 Locus6128 3780605 0.58 0.0166136 0.0253958 -0.42436 Locus6129 3780739 0.08 0.111355 0.00995378 2.41477 -Locus6130 3781552 0.1 0.389839 0.0119766 3.48278 +Locus6130 3781552 0.1 0.22473 0.0119766 2.93195 Locus6132 3783090 0.24 0.0615824 0.0118592 1.64727 -Locus6133 3783559 0.1 0.389839 0.0145512 3.28806 +Locus6133 3783559 0.1 0.224557 0.0145512 2.73645 Locus6134 3788066 0.06 0.0932513 0.0138526 1.90682 Locus6137 3789538 0.1 0.0294429 0.0147972 0.688014 Locus6140 3789864 0.14 0.235734 0.013505 2.85965 Locus6144 3794182 0.14 0.0287886 0.0150196 0.650622 -Locus6147 3795672 0.06 1.1669 0.012306 4.55202 +Locus6147 3795672 0.06 0.612268 0.012306 3.90709 Locus6148 3796192 0.88 0.014076 0.0306586 -0.778444 -Locus6149 3797096 0.1 0.761302 0.0117098 4.1746 -Locus6150 3797498 0.06 1.1669 0.0121383 4.56575 +Locus6149 3797096 0.1 0.534464 0.0117098 3.82084 +Locus6150 3797498 0.06 0.611067 0.0121383 3.91884 Locus6151 3798203 0.1 0.0458817 0.0124224 1.30656 -Locus6152 3798409 0.1 0.38948 0.0121259 3.46947 +Locus6152 3798409 0.1 0.222714 0.0121259 2.91055 Locus6155 3799597 0.14 0.110288 0.0110411 2.30147 Locus6157 3800076 0.22 0.102633 0.010893 2.24304 -Locus6158 3801676 0.1 0.38948 0.0106228 3.60181 +Locus6158 3801676 0.1 0.222441 0.0106228 3.04166 Locus6159 3802264 0.1 0.0659706 0.00996555 1.89008 Locus6160 3802303 0.9 0.00996555 0.0659706 -1.89008 Locus6161 3802480 0.28 0.0539533 0.00985647 1.69999 @@ -4148,11 +3905,11 @@ Locus6165 3806827 0.1 0.213591 0.0123297 2.85205 Locus6166 3807909 0.1 0.0458817 0.0136592 1.21165 Locus6167 3808043 0.24 0.0210067 0.0183363 0.13596 Locus6170 3809647 0.16 0.0880647 0.0137104 1.85991 -Locus6171 3809828 0.1 0.38948 0.0151748 3.24518 -Locus6174 3811184 0.1 0.38948 0.0152878 3.23776 +Locus6171 3809828 0.1 0.221597 0.0151748 2.68122 +Locus6174 3811184 0.1 0.221351 0.0152878 2.6727 Locus6175 3811686 0.26 0.0205452 0.0209666 -0.0203031 -Locus6177 3812948 0.1 0.761302 0.0128414 4.08236 -Locus6178 3814648 0.12 0.515791 0.0131949 3.66587 +Locus6177 3812948 0.1 0.534479 0.0128414 3.72862 +Locus6178 3814648 0.12 0.364547 0.0131949 3.31882 Locus6179 3814815 0.28 0.0190282 0.0213597 -0.115586 Locus6180 3814880 0.72 0.0213597 0.0190282 0.115586 Locus6181 3815386 0.28 0.0190282 0.0213597 -0.115586 @@ -4174,9 +3931,9 @@ Locus6198 3820124 0.42 0.0299889 0.016441 0.60105 Locus6199 3821428 0.38 0.0357837 0.0140947 0.931696 Locus6200 3821658 0.12 0.147382 0.0100741 2.68306 Locus6201 3822094 0.38 0.0357837 0.0134691 0.977093 -Locus6202 3822863 0.06 1.1669 0.00933256 4.8286 -Locus6203 3823032 0.12 0.515791 0.00935653 4.00963 -Locus6205 3823494 0.06 1.1669 0.00950065 4.81075 +Locus6202 3822863 0.06 0.602808 0.00933256 4.16809 +Locus6203 3823032 0.12 0.364654 0.00935653 3.66288 +Locus6205 3823494 0.06 0.602511 0.00950065 4.14975 Locus6206 3823779 0.32 0.0500769 0.0113869 1.4811 Locus6207 3823855 0.62 0.0134641 0.0358137 -0.978308 Locus6209 3824516 0.32 0.0500769 0.0113229 1.48673 @@ -4184,7 +3941,7 @@ Locus6210 3825070 0.06 0.391298 0.0100722 3.65969 Locus6211 3825368 0.12 0.147382 0.0111204 2.58425 Locus6213 3826337 0.12 0.0503197 0.0130545 1.34927 Locus6215 3826673 0.26 0.0708092 0.012919 1.70129 -Locus6217 3829854 0.12 0.515791 0.0140735 3.60141 +Locus6217 3829854 0.12 0.364543 0.0140735 3.25435 Locus6218 3829926 0.06 0.391298 0.0143338 3.30685 Locus6220 3833339 0.68 0.0167742 0.0564149 -1.21289 Locus6221 3834234 0.62 0.0195088 0.0406592 -0.734358 @@ -4195,13 +3952,13 @@ Locus6226 3837917 0.3 0.0655946 0.0153956 1.44941 Locus6228 3839670 0.24 0.043701 0.0185581 0.856462 Locus6231 3842800 0.08 0.0743086 0.0171542 1.46598 Locus6232 3843159 0.06 0.391298 0.0164196 3.171 -Locus6236 3844277 0.12 0.513693 0.0167609 3.42258 +Locus6236 3844277 0.12 0.362419 0.0167609 3.07375 Locus6239 3845676 0.9 0.0186059 0.124906 -1.90408 Locus6241 3850844 0.56 0.0202626 0.0441665 -0.779191 Locus6242 3852135 0.4 0.0544711 0.0178184 1.11744 Locus6244 3856757 0.08 0.089993 0.0171477 1.65787 Locus6245 3857858 0.42 0.0191346 0.0301566 -0.454903 -Locus6246 3857977 0.1 0.761302 0.0126118 4.1004 +Locus6246 3857977 0.1 0.534606 0.0126118 3.7469 Locus6247 3858025 0.38 0.0535832 0.0139403 1.34645 Locus6249 3858292 0.08 0.0763735 0.0134773 1.73463 Locus6252 3859975 0.26 0.0415946 0.0203554 0.714623 @@ -4285,21 +4042,21 @@ Locus6360 3920769 0.34 0.0358126 0.0140986 0.932225 Locus6362 3921691 0.06 0.224521 0.0114081 2.97964 Locus6363 3922123 0.46 0.0249963 0.0293209 -0.159573 Locus6364 3925188 0.42 0.0342708 0.0285654 0.182098 -Locus6365 3928509 0.08 0.59006 0.0153687 3.64789 -Locus6367 3929656 0.06 1.14744 0.0155129 4.30362 +Locus6365 3928509 0.08 0.290384 0.0153687 2.93887 +Locus6367 3929656 0.06 0.547852 0.0155129 3.56433 Locus6368 3930144 0.06 0.0506445 0.0154306 1.18848 Locus6371 3932347 0.4 0.0325946 0.0304622 0.0676593 -Locus6372 3933014 0.1 0.761302 0.0137608 4.01321 +Locus6372 3933014 0.1 0.534418 0.0137608 3.65935 Locus6373 3933340 0.4 0.026984 0.0304622 -0.121244 Locus6374 3933667 0.34 0.0411583 0.0251385 0.493025 -Locus6375 3934703 0.1 0.761302 0.0141652 3.98424 +Locus6375 3934703 0.1 0.53455 0.0141652 3.63064 Locus6376 3936682 0.4 0.0280306 0.0304622 -0.0831888 -Locus6380 3938922 0.1 0.709048 0.0154998 3.8231 +Locus6380 3938922 0.1 0.482298 0.0154998 3.43774 Locus6381 3939828 0.12 0.0762742 0.0171368 1.4931 Locus6382 3939972 0.62 0.0295947 0.0280546 0.0534431 Locus6383 3940638 0.08 0.182906 0.01516 2.49031 Locus6384 3941160 0.5 0.0379253 0.0146399 0.951869 -Locus6387 3945141 0.06 1.14744 0.0151763 4.32555 +Locus6387 3945141 0.06 0.542428 0.0151763 3.57632 Locus6388 3945529 0.38 0.0275881 0.0268692 0.0264061 Locus6392 3947506 0.36 0.0341604 0.0257346 0.283231 Locus6393 3948686 0.5 0.0380412 0.0160341 0.863955 @@ -4307,8 +4064,8 @@ Locus6394 3949297 0.5 0.0380412 0.0160341 0.863955 Locus6395 3949478 0.06 0.0506445 0.0176298 1.05524 Locus6397 3952466 0.16 0.0249971 0.0225163 0.104519 Locus6398 3952567 0.06 0.391298 0.0173259 3.11727 -Locus6399 3959368 0.08 0.579248 0.0189126 3.4219 -Locus6400 3959653 0.12 0.237165 0.0200248 2.47178 +Locus6399 3959368 0.08 0.274731 0.0189126 2.67597 +Locus6400 3959653 0.12 0.115194 0.0200248 1.74965 Locus6403 3961847 0.58 0.0275261 0.0206357 0.288112 Locus6404 3962219 0.36 0.0433888 0.0086316 1.61477 Locus6405 3963034 0.2 0.112762 0.0117526 2.26121 @@ -4326,17 +4083,17 @@ Locus6418 3968194 0.24 0.0719232 0.0161905 1.49118 Locus6420 3969552 0.24 0.0729822 0.0161905 1.50579 Locus6424 3970624 0.16 0.0833425 0.0147371 1.73259 Locus6425 3971917 0.34 0.0633311 0.00991307 1.85452 -Locus6426 3972187 0.12 0.474024 0.0165951 3.35215 -Locus6427 3972189 0.88 0.0165951 0.474024 -3.35215 -Locus6429 3974089 0.1 0.709048 0.0161132 3.78429 -Locus6430 3974644 0.1 0.709048 0.0161132 3.78429 +Locus6426 3972187 0.12 0.322805 0.0165951 2.96794 +Locus6427 3972189 0.88 0.0165951 0.322805 -2.96794 +Locus6429 3974089 0.1 0.482171 0.0161132 3.39866 +Locus6430 3974644 0.1 0.48221 0.0161132 3.39874 Locus6432 3975305 0.08 0.141308 0.0153789 2.21794 -Locus6433 3975461 0.12 0.47298 0.0177649 3.28183 -Locus6439 3976644 0.08 0.578151 0.0165213 3.55518 +Locus6433 3975461 0.12 0.321714 0.0177649 2.89644 +Locus6439 3976644 0.08 0.270458 0.0165213 2.79546 Locus6440 3976939 0.06 0.0919552 0.0155857 1.77495 -Locus6442 3978417 0.08 0.578151 0.016544 3.55381 -Locus6443 3978890 0.88 0.0171044 0.474202 -3.3223 -Locus6445 3979809 0.1 0.36039 0.0170648 3.05017 +Locus6442 3978417 0.08 0.270104 0.016544 2.79279 +Locus6443 3978890 0.88 0.0171044 0.322937 -2.93812 +Locus6445 3979809 0.1 0.175441 0.0170648 2.33029 Locus6447 3981662 0.18 0.124531 0.0179202 1.93862 Locus6448 3981961 0.16 0.0186824 0.0180699 0.0333358 Locus6449 3983257 0.08 0.149052 0.0152432 2.28017 @@ -4350,8 +4107,8 @@ Locus6458 3987051 0.1 0.140132 0.0138075 2.31737 Locus6459 3987438 0.2 0.103843 0.0163104 1.85108 Locus6461 3988246 0.08 0.217164 0.0164731 2.57892 Locus6462 3988537 0.16 0.0197764 0.0208976 -0.0551451 -Locus6463 3989695 0.08 0.590889 0.0171426 3.54006 -Locus6464 3991027 0.08 0.590889 0.0171426 3.54006 +Locus6463 3989695 0.08 0.280968 0.0171426 2.79667 +Locus6464 3991027 0.08 0.2809 0.0171426 2.79643 Locus6465 3991065 0.16 0.018686 0.0208976 -0.111862 Locus6466 3991336 0.08 0.141308 0.0153874 2.21739 Locus6467 3991681 0.84 0.0202905 0.018686 0.0823783 @@ -4389,7 +4146,6 @@ Locus6511 4016697 0.14 0.073013 0.0169686 1.45927 Locus6512 4017648 0.14 0.073013 0.0169686 1.45927 Locus6513 4018015 0.12 0.100731 0.0171849 1.76842 Locus6514 4019427 0.38 0.0257675 0.0235509 0.089948 -Locus6515 4020454 0.1 0.709048 0.0141508 3.91415 Locus6517 4021867 0.14 0.073013 0.0151281 1.57408 Locus6518 4022127 0.38 0.0479178 0.0160896 1.09131 Locus6519 4023964 0.08 0.0567412 0.0159887 1.26662 @@ -4400,7 +4156,7 @@ Locus6530 4033233 0.18 0.116748 0.015696 2.00662 Locus6531 4034054 0.64 0.0217585 0.0383488 -0.566722 Locus6532 4034274 0.64 0.0217585 0.0383488 -0.566722 Locus6533 4034591 0.64 0.0217585 0.0383488 -0.566722 -Locus6538 4040539 0.08 0.585553 0.0177752 3.49475 +Locus6538 4040539 0.08 0.267151 0.0177752 2.71001 Locus6540 4042796 0.06 0.172545 0.0156661 2.39916 Locus6541 4043853 0.62 0.0234845 0.0365861 -0.443329 Locus6542 4047365 0.4 0.0349408 0.018283 0.64768 @@ -4427,11 +4183,9 @@ Locus6569 4068516 0.08 0.0397816 0.0167279 0.866328 Locus6570 4068599 0.08 0.0502516 0.016014 1.14358 Locus6573 4070524 0.26 0.0513723 0.0150031 1.23084 Locus6575 4071448 0.08 0.04008 0.0129988 1.12602 -Locus6576 4072015 0.08 1.10262 0.0121869 4.50509 Locus6577 4072485 0.34 0.0313183 0.017428 0.586126 Locus6579 4073623 0.34 0.0559745 0.0108677 1.6391 Locus6580 4074356 0.76 0.0128134 0.0488331 -1.33792 -Locus6581 4074795 0.08 1.10262 0.0105906 4.64548 Locus6582 4074959 0.76 0.012921 0.0488331 -1.32956 Locus6583 4075470 0.28 0.0784466 0.00733986 2.3691 Locus6584 4075566 0.1 0.0270384 0.0112989 0.872549 @@ -4440,7 +4194,6 @@ Locus6586 4077254 0.76 0.0142458 0.0488331 -1.23195 Locus6587 4078037 0.76 0.0142458 0.0488331 -1.23195 Locus6588 4078540 0.7 0.0160973 0.0304386 -0.637056 Locus6589 4078759 0.3 0.0304386 0.0160973 0.637056 -Locus6590 4079122 0.08 1.10262 0.00996051 4.70682 Locus6591 4079396 0.7 0.0156428 0.0304386 -0.665697 Locus6592 4079564 0.06 0.061471 0.0103093 1.78552 Locus6593 4079662 0.06 0.0707939 0.0100311 1.95408 @@ -4460,13 +4213,10 @@ Locus6607 4084163 0.7 0.0232304 0.0404729 -0.555171 Locus6608 4084815 0.32 0.0362879 0.024304 0.400844 Locus6611 4085432 0.32 0.0150027 0.024304 -0.482413 Locus6612 4085994 0.08 0.209868 0.0122402 2.84175 -Locus6613 4086024 0.08 0.930398 0.0130047 4.2703 Locus6616 4087002 0.68 0.022876 0.0149042 0.428443 Locus6617 4087038 0.06 0.0420985 0.0126845 1.19963 -Locus6618 4088201 0.08 0.930398 0.0133061 4.24739 Locus6620 4089593 0.32 0.01601 0.0231003 -0.366629 Locus6621 4089727 0.68 0.0231003 0.01601 0.366629 -Locus6622 4091096 0.08 0.930398 0.0131306 4.26067 Locus6624 4091838 0.32 0.0183966 0.0231003 -0.227678 Locus6625 4091890 0.32 0.0183966 0.0231003 -0.227678 Locus6626 4091977 0.62 0.0229997 0.0159813 0.364061 @@ -4484,12 +4234,11 @@ Locus6639 4097026 0.38 0.0143703 0.021251 -0.39124 Locus6640 4097031 0.38 0.0143703 0.021251 -0.39124 Locus6641 4097376 0.08 0.04614 0.00944417 1.58628 Locus6642 4097735 0.12 0.0990371 0.00942371 2.35227 -Locus6643 4097808 0.06 1.14082 0.00868383 4.87804 +Locus6643 4097808 0.06 0.484911 0.00868383 4.0225 Locus6645 4099101 0.06 0.0373825 0.00819993 1.51708 Locus6646 4099518 0.62 0.0176194 0.0128771 0.313548 Locus6648 4101273 0.44 0.0100497 0.0203292 -0.704512 Locus6649 4101430 0.18 0.0232608 0.00937573 0.908645 -Locus6650 4101894 0.08 0.930398 0.00774731 4.78827 Locus6651 4102847 0.18 0.0238038 0.010231 0.844419 Locus6652 4102853 0.26 0.0585968 0.00521887 2.4184 Locus6653 4104323 0.08 0.209868 0.00590165 3.57125 @@ -4498,12 +4247,10 @@ Locus6657 4105246 0.06 0.0279057 0.00625308 1.49576 Locus6658 4105835 0.16 0.115424 0.00693058 2.81267 Locus6659 4106112 0.44 0.023214 0.00849018 1.00585 Locus6660 4107029 0.16 0.115424 0.00775688 2.70004 -Locus6663 4108342 0.08 0.930398 0.00724341 4.85552 Locus6664 4108561 0.12 0.0875324 0.0074304 2.46643 Locus6667 4109424 0.16 0.113501 0.00819336 2.62849 Locus6668 4110006 0.08 0.209868 0.00729783 3.3589 Locus6669 4110092 0.1 0.14795 0.00722882 3.0188 -Locus6670 4111544 0.08 0.930398 0.00817917 4.73402 Locus6671 4111892 0.12 0.0380768 0.00886559 1.45743 Locus6672 4111895 0.2 0.0801498 0.00661608 2.49439 Locus6673 4112130 0.08 0.209868 0.00928179 3.11842 @@ -4568,7 +4315,6 @@ Locus6738 4134791 0.3 0.0312704 0.00964194 1.17655 Locus6740 4135124 0.12 0.106329 0.00693938 2.72932 Locus6741 4135216 0.3 0.0265042 0.00948607 1.02748 Locus6742 4135989 0.54 0.0160801 0.0156514 0.0270227 -Locus6743 4136077 0.06 1.82006 0.00569512 5.76701 Locus6744 4136307 0.54 0.0180102 0.0156514 0.140381 Locus6747 4137770 0.5 0.0162517 0.0152436 0.0640396 Locus6748 4139053 0.4 0.0177891 0.01439 0.212054 @@ -4592,7 +4338,7 @@ Locus6778 4150019 0.4 0.0191319 0.0133048 0.363234 Locus6779 4150080 0.4 0.0191319 0.0133048 0.363234 Locus6780 4151049 0.08 0.20236 0.00871877 3.14457 Locus6782 4151564 0.06 0.0970412 0.00881246 2.39897 -Locus6786 4152941 0.9 0.00867737 0.378719 -3.77608 +Locus6786 4152941 0.9 0.00867737 0.176579 -3.01305 Locus6788 4153894 0.06 0.0951485 0.0086747 2.39503 Locus6789 4154203 0.06 0.0459664 0.00846645 1.6918 Locus6790 4154743 0.28 0.0377855 0.0107365 1.25827 @@ -4674,7 +4420,6 @@ Locus6898 4201693 0.4 0.0231333 0.0207984 0.106397 Locus6899 4202132 0.06 0.0360425 0.01038 1.24482 Locus6900 4202597 0.14 0.069473 0.0121378 1.74462 Locus6902 4203688 0.46 0.0345096 0.015849 0.778131 -Locus6904 4205247 0.08 0.934524 0.0111244 4.43089 Locus6907 4206623 0.1 0.152938 0.0115658 2.58198 Locus6908 4206890 0.46 0.00921588 0.0282516 -1.12022 Locus6909 4207583 0.54 0.0282516 0.00921588 1.12022 @@ -4695,7 +4440,6 @@ Locus6931 4218274 0.1 0.16809 0.0129155 2.56608 Locus6936 4220945 0.12 0.131307 0.0124973 2.35203 Locus6937 4222728 0.22 0.076329 0.013145 1.75901 Locus6938 4223084 0.6 0.0158444 0.0188433 -0.173338 -Locus6939 4223231 0.06 1.82006 0.00705536 5.55284 Locus6940 4223736 0.34 0.0362433 0.0081544 1.4917 Locus6942 4224076 0.32 0.0167195 0.012776 0.269006 Locus6943 4224161 0.22 0.0730297 0.00932066 2.05863 @@ -4703,7 +4447,6 @@ Locus6944 4224406 0.12 0.131307 0.00797714 2.80096 Locus6948 4225808 0.28 0.0314546 0.0113006 1.02369 Locus6950 4226170 0.44 0.0156625 0.0150168 0.0421013 Locus6951 4226997 0.78 0.00941261 0.0679744 -1.97708 -Locus6952 4227512 0.08 0.920295 0.00730104 4.83668 Locus6953 4227538 0.22 0.0664415 0.00941261 1.95427 Locus6956 4228075 0.38 0.0122925 0.014143 -0.14023 Locus6957 4228076 0.78 0.00924301 0.0668027 -1.97788 @@ -4716,7 +4459,7 @@ Locus6965 4231085 0.22 0.0723948 0.00491274 2.6903 Locus6967 4231689 0.06 0.0934989 0.00787287 2.47453 Locus6968 4231708 0.26 0.0367828 0.0105065 1.25304 Locus6969 4232001 0.46 0.0159211 0.0161413 -0.0137365 -Locus6970 4232584 0.06 1.29196 0.00508188 5.53823 +Locus6970 4232584 0.06 0.591414 0.00508188 4.75684 Locus6971 4232903 0.06 0.108063 0.00670589 2.77973 Locus6972 4232911 0.76 0.00847879 0.0428516 -1.62018 Locus6974 4233827 0.46 0.0161921 0.0166457 -0.0276281 @@ -4739,10 +4482,8 @@ Locus6990 4238996 0.68 0.0178287 0.0287985 -0.479517 Locus6991 4239219 0.06 0.0242245 0.0100818 0.87663 Locus6992 4239634 0.68 0.0187063 0.0287985 -0.431462 Locus6994 4239722 0.32 0.0287985 0.0187725 0.427931 -Locus6995 4240794 0.08 0.980645 0.0123945 4.37096 Locus6996 4241375 0.06 0.105918 0.0121284 2.16711 Locus6999 4242853 0.18 0.086482 0.0123437 1.94679 -Locus7000 4242988 0.08 0.980645 0.0113436 4.45956 Locus7001 4243475 0.08 0.0690289 0.0114657 1.79516 Locus7002 4244302 0.72 0.0149047 0.0424391 -1.04639 Locus7004 4244858 0.2 0.0695489 0.0120522 1.75278 @@ -4752,11 +4493,9 @@ Locus7007 4246150 0.28 0.0424391 0.0184543 0.832771 Locus7008 4246604 0.66 0.0214655 0.0297018 -0.32476 Locus7009 4246655 0.72 0.0180755 0.0424391 -0.853511 Locus7010 4247302 0.72 0.0180755 0.0424391 -0.853511 -Locus7011 4247641 0.16 0.151221 0.0151058 2.30366 Locus7012 4249587 0.06 0.132125 0.0122826 2.37556 Locus7013 4250329 0.62 0.0232339 0.0230909 0.00617298 Locus7014 4250449 0.52 0.0331539 0.0133865 0.906913 -Locus7015 4250643 0.08 0.980645 0.0109003 4.49942 Locus7016 4250906 0.32 0.0306462 0.0189869 0.47876 Locus7019 4251104 0.32 0.0300131 0.0186413 0.476255 Locus7020 4251395 0.12 0.141774 0.011276 2.53156 @@ -4780,9 +4519,7 @@ Locus7046 4265016 0.06 0.0956725 0.0152397 1.83703 Locus7047 4265188 0.14 0.107227 0.0163419 1.88122 Locus7048 4265568 0.74 0.0197882 0.0493825 -0.914511 Locus7050 4268442 0.26 0.0539226 0.0197882 1.00247 -Locus7052 4270721 0.08 1.05685 0.017155 4.12076 Locus7054 4273793 0.08 0.226656 0.0165942 2.61438 -Locus7056 4275559 0.08 1.05685 0.0161739 4.17965 Locus7057 4275801 0.08 0.107842 0.0152938 1.95321 Locus7058 4275887 0.44 0.0238819 0.0241569 -0.0114469 Locus7059 4276123 0.16 0.0929456 0.0137129 1.91367 @@ -4792,7 +4529,6 @@ Locus7064 4282898 0.16 0.0929456 0.0151874 1.81155 Locus7065 4284240 0.26 0.0437219 0.017747 0.901632 Locus7066 4284394 0.84 0.0161404 0.0929456 -1.75069 Locus7069 4285861 0.16 0.0929456 0.0162513 1.74384 -Locus7072 4289402 0.08 1.05685 0.0150496 4.2517 Locus7073 4291006 0.18 0.104473 0.0130016 2.08386 Locus7075 4291740 0.06 0.137622 0.0117539 2.46033 Locus7076 4292065 0.4 0.0310076 0.0134125 0.838041 @@ -4804,7 +4540,6 @@ Locus7082 4295178 0.4 0.036663 0.0161486 0.819937 Locus7083 4297123 0.4 0.036663 0.0161486 0.819937 Locus7085 4299192 0.12 0.0895646 0.015009 1.78631 Locus7089 4301836 0.08 0.0852007 0.0140874 1.79973 -Locus7090 4304087 0.08 1.05685 0.0133313 4.37293 Locus7092 4305078 0.12 0.0895646 0.0137786 1.87184 Locus7093 4305759 0.12 0.0895646 0.0137786 1.87184 Locus7095 4306248 0.16 0.0943064 0.0112109 2.12966 @@ -4814,7 +4549,6 @@ Locus7099 4309528 0.6 0.0208194 0.020199 0.0302535 Locus7100 4311813 0.68 0.017663 0.0234285 -0.282483 Locus7101 4312548 0.2 0.0444737 0.0135379 1.1894 Locus7102 4312751 0.1 0.129141 0.0131398 2.28526 -Locus7104 4314094 0.08 1.05685 0.0127424 4.41811 Locus7105 4315304 0.1 0.129141 0.014224 2.20598 Locus7107 4316833 0.1 0.129141 0.0136192 2.24943 Locus7108 4317065 0.1 0.129141 0.0136192 2.24943 @@ -4824,7 +4558,7 @@ Locus7111 4319775 0.9 0.0133869 0.0973854 -1.9844 Locus7112 4320418 0.14 0.0986227 0.0113962 2.15802 Locus7113 4321061 0.9 0.0135267 0.0973854 -1.97401 Locus7118 4325998 0.12 0.088517 0.0129074 1.92539 -Locus7122 4327297 0.12 0.304378 0.00987196 3.42857 +Locus7122 4327297 0.12 0.157901 0.00987196 2.77227 Locus7124 4327837 0.42 0.0229311 0.0150888 0.418543 Locus7125 4327942 0.08 0.138481 0.00796395 2.85581 Locus7126 4328970 0.4 0.0245035 0.014664 0.513422 @@ -4852,33 +4586,28 @@ Locus7161 4348052 0.12 0.129525 0.00532867 3.19077 Locus7163 4348822 0.26 0.026623 0.00581869 1.5207 Locus7164 4349377 0.42 0.0183611 0.00890948 0.723119 Locus7165 4349439 0.06 0.128636 0.0062138 3.03021 -Locus7166 4349865 0.08 0.659901 0.0066993 4.59009 +Locus7166 4349865 0.08 0.290037 0.0066993 3.76801 Locus7168 4352734 0.38 0.0129397 0.0104273 0.215873 Locus7169 4353672 0.32 0.0202966 0.00864597 0.853358 Locus7170 4353717 0.32 0.0230077 0.0077506 1.08806 -Locus7171 4354223 0.12 0.443263 0.00576993 4.3415 Locus7175 4355387 0.42 0.0172062 0.00924872 0.620786 Locus7177 4356132 0.16 0.0578612 0.00566831 2.32316 -Locus7178 4357252 0.14 0.150849 0.00637058 3.16459 Locus7180 4357987 0.58 0.0146691 0.0114869 0.24454 Locus7181 4358900 0.58 0.0146691 0.0114869 0.24454 Locus7186 4360467 0.06 0.0670601 0.00815997 2.10635 -Locus7187 4360953 0.06 1.29196 0.00849445 5.0245 +Locus7187 4360953 0.06 0.548875 0.00849445 4.16846 Locus7188 4363640 0.38 0.024313 0.01194 0.711118 -Locus7190 4364567 0.08 0.650508 0.00948996 4.22752 +Locus7190 4364567 0.08 0.278129 0.00948996 3.37785 Locus7194 4369085 0.18 0.0356937 0.00868721 1.41312 -Locus7195 4369193 0.12 0.443263 0.00715657 4.12613 Locus7197 4369998 0.48 0.0169874 0.00981705 0.548352 Locus7198 4370528 0.06 0.095339 0.00450574 3.05209 Locus7199 4370733 0.48 0.0165768 0.00981705 0.523883 Locus7200 4371099 0.06 0.170382 0.00524854 3.48009 -Locus7205 4372499 0.1 0.647381 0.00603748 4.67495 Locus7207 4373479 0.2 0.0292328 0.00685067 1.45095 Locus7208 4374109 0.52 0.0100396 0.0155713 -0.43889 Locus7209 4374138 0.52 0.0100396 0.0155713 -0.43889 Locus7211 4374653 0.44 0.0176072 0.010162 0.549654 Locus7212 4375390 0.56 0.010162 0.0176072 -0.549654 -Locus7213 4376542 0.06 0.228212 0.00640667 3.57293 Locus7214 4377539 0.28 0.0274897 0.00766937 1.27658 Locus7216 4378177 0.1 0.157494 0.00820886 2.95418 Locus7218 4379081 0.4 0.0128658 0.0147347 -0.135633 @@ -4900,7 +4629,6 @@ Locus7253 4401505 0.06 0.0338745 0.0114802 1.08204 Locus7254 4402523 0.08 0.06393 0.0119701 1.67538 Locus7255 4403372 0.24 0.0110019 0.0179559 -0.489852 Locus7258 4406458 0.78 0.0178057 0.0114084 0.445166 -Locus7259 4406591 0.1 0.651144 0.0135917 3.86927 Locus7263 4408491 0.1 0.157494 0.0143397 2.39636 Locus7265 4411631 0.06 0.0338745 0.0156875 0.769799 Locus7269 4412905 0.7 0.0228578 0.010223 0.804648 @@ -4920,18 +4648,14 @@ Locus7294 4432210 0.42 0.0199105 0.016469 0.189769 Locus7295 4432563 0.22 0.0334778 0.0102196 1.18657 Locus7296 4434356 0.46 0.0165876 0.0179354 -0.0781199 Locus7297 4437579 0.58 0.016134 0.0202311 -0.226292 -Locus7298 4438859 0.08 0.987557 0.00953114 4.64067 Locus7300 4440725 0.6 0.0144325 0.0206429 -0.357893 Locus7301 4441227 0.06 0.0515574 0.00821515 1.83672 Locus7303 4442790 0.28 0.0391535 0.00775705 1.61889 Locus7304 4443320 0.34 0.0125547 0.0133226 -0.0593701 -Locus7305 4443659 0.1 0.147678 0.00967073 2.72593 Locus7307 4446481 0.08 0.0843315 0.0102031 2.11206 -Locus7308 4446783 0.06 1.29196 0.00925919 4.9383 +Locus7308 4446783 0.06 0.519672 0.00925919 4.02758 Locus7310 4447877 0.16 0.0244753 0.0107587 0.821947 -Locus7311 4448325 0.22 0.0813041 0.011971 1.91571 Locus7312 4448546 0.08 0.0843315 0.0105903 2.07481 -Locus7313 4449411 0.1 0.59723 0.0117832 3.92563 Locus7316 4454385 0.16 0.0681534 0.0124047 1.70368 Locus7318 4454825 0.4 0.0155915 0.0137515 0.125581 Locus7319 4454876 0.12 0.061174 0.00923705 1.8905 @@ -4956,33 +4680,23 @@ Locus7347 4471889 0.08 0.0904835 0.005567 2.78831 Locus7348 4472195 0.06 0.0671508 0.00530874 2.53759 Locus7349 4472240 0.36 0.00994802 0.0102867 -0.0334745 Locus7350 4472935 0.58 0.00935995 0.0108429 -0.147074 -Locus7351 4473853 0.1 0.62464 0.00534289 4.76141 -Locus7352 4474637 0.1 0.62464 0.00534289 4.76141 -Locus7353 4475036 0.1 0.62464 0.00534289 4.76141 Locus7354 4475067 0.08 0.0339657 0.00511217 1.89373 Locus7355 4475588 0.4 0.00886824 0.00958475 -0.0776967 Locus7356 4476074 0.06 0.141949 0.00392214 3.58883 -Locus7357 4476144 0.1 0.62464 0.0042799 4.98325 -Locus7359 4476395 0.1 0.62464 0.0042778 4.98374 Locus7360 4477121 0.54 0.0106125 0.00607979 0.557061 Locus7361 4477719 0.06 0.0671508 0.00382816 2.86456 -Locus7362 4478341 0.06 0.388164 0.00367396 4.66016 Locus7365 4478927 0.38 0.0164678 0.00420287 1.36564 -Locus7366 4479064 0.18 0.0823457 0.00331388 3.21281 Locus7367 4479282 0.08 0.0283115 0.00306494 2.22324 Locus7368 4479348 0.38 0.0164678 0.00636618 0.950409 Locus7370 4479614 0.22 0.00843745 0.00821292 0.0269716 Locus7373 4480347 0.06 0.141949 0.00530596 3.28664 -Locus7375 4481147 0.12 0.0825994 0.00661443 2.52475 Locus7376 4481511 0.7 0.0111407 0.00701227 0.462946 Locus7378 4482428 0.2 0.0119666 0.00973902 0.205977 Locus7379 4483437 0.28 0.0110754 0.0116748 -0.0527097 Locus7380 4484798 0.24 0.0479534 0.00918261 1.65292 Locus7383 4487854 0.3 0.015378 0.0148061 0.0378987 -Locus7384 4490022 0.12 0.106759 0.0104436 2.32459 Locus7386 4491175 0.06 0.023756 0.00990227 0.87507 Locus7390 4492313 0.22 0.0278279 0.0131374 0.750578 -Locus7392 4492820 0.2 0.0820719 0.012428 1.88764 Locus7394 4493767 0.06 0.0780096 0.0143069 1.69609 Locus7398 4500385 0.16 0.0489385 0.0157427 1.13419 Locus7400 4501866 0.18 0.0432776 0.0137509 1.14653 @@ -4993,15 +4707,12 @@ Locus7405 4507007 0.1 0.00849652 0.0154674 -0.599076 Locus7406 4507596 0.06 0.0780096 0.0146811 1.67027 Locus7408 4510009 0.06 0.0780096 0.0151158 1.64109 Locus7412 4513521 0.1 0.0224181 0.0147143 0.421049 -Locus7413 4513832 0.08 1.01177 0.0126618 4.38086 Locus7414 4515669 0.1 0.0174868 0.011783 0.394791 Locus7415 4515809 0.34 0.021063 0.0109087 0.657955 Locus7417 4517113 0.08 0.0326306 0.00728703 1.49915 -Locus7418 4517349 0.08 1.01177 0.00688592 4.98998 Locus7419 4517455 0.06 0.0780096 0.00636407 2.50616 Locus7420 4517562 0.4 0.0163426 0.010369 0.454948 Locus7421 4517887 0.6 0.010369 0.0163426 -0.454948 -Locus7422 4518085 0.08 1.01177 0.00517584 5.27545 Locus7423 4518502 0.36 0.0192848 0.00752329 0.941314 Locus7424 4518587 0.3 0.025191 0.00853391 1.08244 Locus7425 4518660 0.16 0.0601506 0.00752486 2.07864 @@ -5015,13 +4726,11 @@ Locus7439 4526739 0.08 0.00379054 0.0111012 -1.07454 Locus7440 4526798 0.92 0.0111012 0.00379054 1.07454 Locus7443 4528325 0.06 0.00738107 0.010548 -0.357013 Locus7446 4529362 0.16 0.0573561 0.0106643 1.68238 -Locus7448 4529965 0.08 1.01177 0.00958086 4.65969 Locus7450 4530778 0.1 0.0281725 0.010232 1.01283 Locus7452 4531591 0.08 0.0304629 0.0105454 1.06082 Locus7453 4532872 0.08 0.00609257 0.0114059 -0.627063 Locus7456 4535005 0.18 0.0499233 0.0125739 1.37887 Locus7458 4536216 0.2 0.0527673 0.0116772 1.50825 -Locus7459 4536270 0.08 1.01177 0.00967548 4.64986 Locus7460 4537457 0.16 0.086907 0.0115087 2.02173 Locus7468 4541218 0.08 0.0647729 0.0117478 1.70722 Locus7469 4541922 0.28 0.0201362 0.0156656 0.251051 @@ -5031,34 +4740,22 @@ Locus7474 4547531 0.32 0.0383768 0.012699 1.10593 Locus7475 4547555 0.12 0.0205919 0.0109239 0.633942 Locus7477 4548847 0.4 0.025461 0.0142393 0.581144 Locus7479 4551231 0.6 0.0144537 0.025461 -0.5662 -Locus7480 4551276 0.08 1.01025 0.00902133 4.71836 Locus7482 4552162 0.08 0.0336547 0.00949889 1.26498 Locus7483 4552943 0.16 0.0606148 0.00947703 1.85567 Locus7484 4553577 0.6 0.0127024 0.024635 -0.662378 Locus7485 4554876 0.06 0.047774 0.0103505 1.52945 Locus7486 4555460 0.1 0.0188281 0.0111434 0.524502 -Locus7487 4556591 0.78 0.0108401 0.085529 -2.0656 -Locus7489 4557876 0.12 0.110324 0.00891718 2.51544 Locus7490 4557978 0.1 0.0188281 0.00956652 0.677083 Locus7491 4559190 0.06 0.0821911 0.00895604 2.21672 -Locus7494 4560423 0.22 0.085529 0.0123239 1.93732 Locus7495 4560643 0.26 0.0198865 0.0126116 0.455427 -Locus7496 4560737 0.08 1.01025 0.00974453 4.64125 -Locus7501 4563082 0.78 0.0131615 0.0831408 -1.84324 Locus7502 4564852 0.16 0.0473977 0.0121368 1.36233 -Locus7503 4565785 0.08 1.01025 0.0124228 4.39842 -Locus7504 4567933 0.22 0.0820984 0.0171931 1.56341 -Locus7506 4568275 0.22 0.0820984 0.0165813 1.59964 -Locus7508 4569435 0.08 1.01025 0.011555 4.47083 Locus7512 4570407 0.14 0.0710297 0.0139495 1.62765 -Locus7513 4570692 0.08 1.01025 0.0136768 4.30225 Locus7514 4571191 0.08 0.0236972 0.0138991 0.533534 Locus7516 4572096 0.58 0.010258 0.0402641 -1.3674 Locus7517 4572813 0.42 0.0402641 0.010258 1.3674 Locus7520 4573172 0.3 0.0253787 0.014277 0.575264 Locus7522 4573834 0.54 0.0107452 0.0356191 -1.19842 Locus7528 4577456 0.08 0.0242446 0.0123543 0.674195 -Locus7530 4577830 0.12 0.0932818 0.0131359 1.96028 Locus7531 4577950 0.2 0.0269948 0.0160528 0.519762 Locus7532 4578168 0.22 0.0222548 0.0165376 0.296925 Locus7534 4578649 0.06 0.00600105 0.0117432 -0.671344 @@ -5066,31 +4763,15 @@ Locus7537 4579663 0.78 0.0166047 0.0231945 -0.33423 Locus7538 4580131 0.06 0.00600105 0.0124234 -0.72765 Locus7539 4581203 0.38 0.0467095 0.00960266 1.58191 Locus7540 4581467 0.32 0.0623595 0.0085998 1.98118 -Locus7542 4581562 0.12 0.4129 0.015373 3.29059 Locus7543 4583031 0.06 0.00600105 0.0144724 -0.880306 Locus7545 4583298 0.06 0.00600105 0.0145362 -0.884711 -Locus7546 4583693 0.12 0.080644 0.0160594 1.61375 -Locus7548 4583934 0.08 0.193966 0.0150636 2.5554 Locus7552 4585236 0.06 0.0221003 0.0175116 0.232726 -Locus7553 4586731 0.08 1.01025 0.0173862 4.06228 Locus7555 4589441 0.08 0.0157807 0.0183329 -0.14991 Locus7556 4589518 0.08 0.0157807 0.0183329 -0.14991 -Locus7557 4590408 0.08 1.01025 0.0184397 4.00344 -Locus7558 4590897 0.86 0.0205275 0.125314 -1.80906 -Locus7559 4592685 0.86 0.0205275 0.125314 -1.80906 -Locus7560 4592821 0.08 1.01025 0.0176241 4.04868 -Locus7561 4593486 0.86 0.0205275 0.126592 -1.8192 -Locus7563 4594825 0.14 0.126592 0.0200813 1.84117 Locus7566 4595452 0.1 0.0230457 0.0169577 0.306757 -Locus7567 4595896 0.12 0.409137 0.0181901 3.11317 -Locus7568 4595955 0.88 0.0181901 0.409137 -3.11317 -Locus7569 4596726 0.12 0.409137 0.0181901 3.11317 -Locus7571 4598252 0.14 0.127611 0.0182411 1.94531 -Locus7572 4598638 0.1 0.14088 0.014781 2.25457 Locus7573 4598736 0.52 0.0150735 0.0297186 -0.678837 Locus7574 4599461 0.94 0.0126785 0.0228502 -0.589055 Locus7575 4600356 0.94 0.0126785 0.0228502 -0.589055 -Locus7577 4601494 0.08 0.193966 0.0118235 2.7976 Locus7579 4602145 0.52 0.0156288 0.0283657 -0.596066 Locus7580 4602345 0.06 0.0414656 0.0106835 1.35617 Locus7582 4603247 0.44 0.0332876 0.0130827 0.933895 @@ -5102,15 +4783,12 @@ Locus7588 4608451 0.22 0.105251 0.00950614 2.40441 Locus7589 4608722 0.24 0.02569 0.013603 0.635814 Locus7590 4609676 0.3 0.0622914 0.00834482 2.01018 Locus7591 4611010 0.3 0.0622914 0.00834482 2.01018 -Locus7592 4611122 0.08 0.215742 0.0100701 3.06451 Locus7593 4611142 0.76 0.0143956 0.02569 -0.579177 Locus7594 4612920 0.76 0.0143956 0.02569 -0.579177 Locus7595 4613264 0.18 0.039262 0.0139787 1.03272 Locus7596 4613412 0.18 0.039262 0.0139787 1.03272 Locus7597 4615000 0.06 0.0687153 0.0116771 1.77234 -Locus7599 4617438 0.08 1.01025 0.0118833 4.44282 Locus7600 4617930 0.06 0.0414656 0.0114235 1.28919 -Locus7601 4618448 0.1 0.144748 0.0109993 2.57716 Locus7602 4619100 0.18 0.017827 0.0132575 0.296152 Locus7603 4619382 0.26 0.0392434 0.0136045 1.05938 Locus7606 4620615 0.06 0.0401541 0.0101402 1.37621 @@ -5127,11 +4805,9 @@ Locus7617 4624753 0.3 0.0644229 0.00544286 2.47116 Locus7618 4624960 0.2 0.0149313 0.0123864 0.186866 Locus7619 4625560 0.8 0.0123864 0.0149313 -0.186866 Locus7620 4625633 0.2 0.0149313 0.0123864 0.186866 -Locus7622 4626265 0.1 0.144748 0.00926891 2.74833 Locus7623 4626525 0.26 0.0349387 0.0125268 1.02572 Locus7624 4627046 0.14 0.0147298 0.0122104 0.18758 Locus7625 4627366 0.06 0.0302751 0.0106023 1.04926 -Locus7626 4628459 0.12 0.474148 0.0104799 3.81206 Locus7627 4629006 0.1 0.0283973 0.0116018 0.895136 Locus7628 4629391 0.06 0.0687153 0.0108519 1.84563 Locus7630 4629924 0.12 0.0158521 0.0127976 0.214044 @@ -5145,12 +4821,9 @@ Locus7639 4634560 0.24 0.0123611 0.0160406 -0.260567 Locus7642 4636686 0.24 0.0123611 0.0152745 -0.211629 Locus7643 4637143 0.06 0.0302751 0.00893134 1.22076 Locus7644 4637255 0.76 0.0152745 0.0119521 0.245279 -Locus7645 4637485 0.08 0.19311 0.00910077 3.0549 Locus7646 4638073 0.18 0.118282 0.00840692 2.64402 Locus7649 4640379 0.1 0.058081 0.0101901 1.74042 Locus7652 4641029 0.06 0.0302751 0.00976383 1.13164 -Locus7654 4642422 0.08 0.0820343 0.00922883 2.18481 -Locus7656 4643377 0.18 0.11638 0.01047 2.40834 Locus7659 4644290 0.08 0.0898401 0.010766 2.12164 Locus7660 4645089 0.06 0.00540121 0.010133 -0.629175 Locus7661 4645131 0.08 0.0898401 0.0109191 2.10752 @@ -5158,7 +4831,6 @@ Locus7664 4648276 0.08 0.0898401 0.0112183 2.08048 Locus7665 4648425 0.5 0.027904 0.0130153 0.762642 Locus7666 4649791 0.06 0.0323865 0.0086484 1.32037 Locus7667 4650495 0.5 0.027904 0.012139 0.832343 -Locus7668 4651124 0.1 0.20789 0.00782511 3.27967 Locus7669 4651194 0.26 0.0440769 0.0104552 1.43883 Locus7670 4651947 0.06 0.0323865 0.0100101 1.17415 Locus7672 4653850 0.3 0.0381628 0.0133296 1.05188 @@ -5168,7 +4840,6 @@ Locus7677 4658575 0.08 0.0376467 0.0106778 1.26008 Locus7679 4659702 0.7 0.0153033 0.0392863 -0.94281 Locus7680 4660450 0.3 0.0392863 0.0153033 0.94281 Locus7681 4660657 0.7 0.0153033 0.0392863 -0.94281 -Locus7683 4661791 0.08 1.01569 0.0103288 4.5884 Locus7684 4661940 0.3 0.03969 0.0154312 0.944709 Locus7686 4662401 0.7 0.0154639 0.03969 -0.94259 Locus7687 4662565 0.3 0.03969 0.0154639 0.94259 @@ -5178,9 +4849,7 @@ Locus7691 4666253 0.06 0.0134058 0.011864 0.122184 Locus7692 4666888 0.08 0.0670196 0.0114989 1.76273 Locus7693 4667647 0.08 0.0670196 0.0114989 1.76273 Locus7695 4668025 0.08 0.0670196 0.011404 1.77102 -Locus7700 4669098 0.24 0.0674335 0.0124309 1.69096 Locus7701 4669531 0.08 0.0670196 0.0105172 1.85197 -Locus7702 4669884 0.12 0.1558 0.0089158 2.86075 Locus7703 4670147 0.42 0.0155465 0.0127307 0.199818 Locus7704 4670326 0.58 0.0127307 0.0155465 -0.199818 Locus7705 4670364 0.42 0.0155465 0.0127307 0.199818 @@ -5192,7 +4861,6 @@ Locus7714 4673915 0.48 0.0132146 0.0202713 -0.427887 Locus7715 4674164 0.52 0.0202713 0.0132146 0.427887 Locus7716 4675221 0.52 0.0202713 0.0132146 0.427887 Locus7717 4676662 0.62 0.0139323 0.0193409 -0.328015 -Locus7718 4677043 0.18 0.129365 0.00725923 2.88036 Locus7720 4677123 0.36 0.0215216 0.0160622 0.292592 Locus7721 4677990 0.1 0.0458854 0.00924727 1.60182 Locus7722 4677994 0.36 0.0192742 0.0160622 0.182299 @@ -5206,7 +4874,6 @@ Locus7733 4682852 0.32 0.0238639 0.0143534 0.508383 Locus7734 4683195 0.68 0.0143534 0.0238639 -0.508383 Locus7735 4683663 0.32 0.0238639 0.0143534 0.508383 Locus7736 4683735 0.32 0.0238639 0.0143534 0.508383 -Locus7740 4684749 0.18 0.0710489 0.00975776 1.9853 Locus7741 4684871 0.32 0.0213983 0.0137932 0.439139 Locus7742 4685043 0.14 0.0301216 0.00970248 1.13286 Locus7743 4685722 0.62 0.0144164 0.0176875 -0.204495 @@ -5214,8 +4881,6 @@ Locus7745 4686232 0.36 0.0200688 0.0134288 0.401765 Locus7747 4686512 0.42 0.0140886 0.0165102 -0.158613 Locus7748 4687219 0.6 0.015599 0.0154964 0.00659332 Locus7749 4687257 0.4 0.0154964 0.015599 -0.00659332 -Locus7752 4688213 0.18 0.0628114 0.00930667 1.9094 -Locus7753 4688527 0.16 0.0802506 0.00894639 2.1939 Locus7754 4688563 0.08 0.0469689 0.00849299 1.71025 Locus7755 4689956 0.5 0.0109349 0.0182414 -0.511738 Locus7757 4690611 0.64 0.00660863 0.0352391 -1.67378 @@ -5233,7 +4898,6 @@ Locus7773 4694134 0.6 0.0114542 0.0226049 -0.679812 Locus7782 4699328 0.32 0.0196612 0.00973548 0.702867 Locus7784 4699500 0.22 0.0389835 0.0081689 1.5628 Locus7785 4699607 0.06 0.0550441 0.0066078 2.11988 -Locus7786 4700595 0.1 0.0927507 0.00654363 2.65142 Locus7787 4701269 0.44 0.0163271 0.00820165 0.688493 Locus7788 4701508 0.74 0.00939761 0.0235748 -0.919722 Locus7790 4702251 0.76 0.00909043 0.0257885 -1.0427 @@ -5246,10 +4910,8 @@ Locus7802 4706222 0.06 0.0551545 0.00505243 2.39027 Locus7803 4706275 0.68 0.00934826 0.0147134 -0.453568 Locus7804 4706563 0.08 0.0469689 0.00542991 2.15756 Locus7805 4706816 0.68 0.00934826 0.0146125 -0.446685 -Locus7808 4707708 0.18 0.0695454 0.00461837 2.71194 Locus7809 4707998 0.32 0.0146569 0.00689127 0.754658 Locus7810 4708139 0.68 0.00689127 0.0146569 -0.754658 -Locus7811 4708166 0.12 0.141719 0.00436855 3.47942 Locus7812 4708453 0.14 0.0214048 0.00579895 1.30594 Locus7815 4709673 0.2 0.0158363 0.00604226 0.963527 Locus7819 4710159 0.46 0.015351 0.0107704 0.354377 @@ -5257,13 +4919,11 @@ Locus7820 4710502 0.46 0.015351 0.0107704 0.354377 Locus7821 4710503 0.2 0.0361937 0.00694443 1.65095 Locus7823 4710630 0.4 0.0181165 0.00998073 0.596166 Locus7831 4713761 0.46 0.0194133 0.0133309 0.375875 -Locus7833 4714503 0.08 0.113302 0.00888315 2.5459 Locus7834 4716188 0.5 0.0170023 0.0168737 0.00759072 Locus7837 4717070 0.44 0.0239855 0.0152978 0.449743 Locus7840 4720117 0.46 0.0214869 0.0164404 0.267698 Locus7841 4720172 0.54 0.0164404 0.0214869 -0.267698 Locus7842 4720341 0.52 0.0176817 0.0198771 -0.117039 -Locus7845 4723040 0.06 0.187176 0.0126283 2.69611 Locus7846 4723089 0.06 0.0318577 0.0130609 0.891653 Locus7851 4726628 0.56 0.0177786 0.0273307 -0.430019 Locus7852 4726870 0.42 0.0300001 0.0162752 0.611558 @@ -5293,23 +4953,18 @@ Locus7891 4752370 0.14 0.0105488 0.0117469 -0.107585 Locus7892 4752579 0.1 0.0180713 0.0106649 0.527364 Locus7893 4752596 0.26 0.0149294 0.0146675 0.017695 Locus7896 4753656 0.1 0.0298973 0.0110467 0.995631 -Locus7897 4753842 0.06 1.93594 0.0100292 5.26284 Locus7898 4754687 0.1 0.0957776 0.0108587 2.17706 Locus7899 4754970 0.54 0.0244669 0.0123492 0.683727 Locus7902 4759046 0.64 0.0204031 0.0139019 0.38366 Locus7903 4760342 0.32 0.0197798 0.0170817 0.146649 Locus7906 4761231 0.5 0.0151197 0.0168814 -0.11021 -Locus7907 4761339 0.14 0.100413 0.00700542 2.6626 Locus7909 4761759 0.5 0.0151197 0.0123858 0.19945 Locus7910 4761989 0.12 0.0775355 0.00677537 2.43744 Locus7912 4762549 0.12 0.0775355 0.00745799 2.34145 Locus7913 4763392 0.5 0.0164625 0.0132507 0.217038 Locus7915 4763561 0.5 0.0164625 0.0131364 0.225698 -Locus7916 4763714 0.24 0.0528776 0.00989769 1.67568 -Locus7919 4764306 0.22 0.0817061 0.00939303 2.16316 Locus7923 4764936 0.36 0.0313576 0.0122242 0.942043 Locus7925 4765724 0.36 0.0313576 0.0124265 0.925626 -Locus7926 4766346 0.22 0.0691574 0.010644 1.87139 Locus7927 4768172 0.4 0.0228051 0.0137518 0.505813 Locus7928 4771255 0.2 0.0319861 0.0103059 1.13259 Locus7929 4771553 0.58 0.0145058 0.0120335 0.18685 @@ -5317,18 +4972,10 @@ Locus7931 4771805 0.2 0.0319861 0.0092473 1.24097 Locus7932 4771954 0.2 0.043411 0.0079635 1.69584 Locus7933 4772753 0.6 0.0125804 0.0169941 -0.30072 Locus7934 4773146 0.52 0.0128896 0.0142037 -0.0970792 -Locus7935 4773163 0.22 0.0698119 0.00759561 2.21823 Locus7937 4773603 0.14 0.0648983 0.00560829 2.44858 Locus7938 4773662 0.28 0.0381977 0.00759745 1.61496 Locus7939 4773765 0.14 0.0747079 0.00742655 2.30852 Locus7940 4773881 0.8 0.0112306 0.0308364 -1.01005 -Locus7942 4776930 0.08 0.288723 0.00934697 3.43042 -Locus7947 4778395 0.24 0.0362116 0.0130653 1.01942 -Locus7948 4780755 0.24 0.0362116 0.0130653 1.01942 -Locus7950 4781147 0.06 0.0855749 0.00891841 2.26127 -Locus7952 4783452 0.26 0.0304656 0.0127564 0.870563 -Locus7953 4783633 0.26 0.0304656 0.0127564 0.870563 -Locus7954 4784042 0.1 0.65127 0.00864253 4.32223 Locus7956 4784285 0.44 0.0180834 0.0117239 0.433364 Locus7957 4784341 0.7 0.01139 0.0205832 -0.591742 Locus7958 4784380 0.14 0.0734843 0.00714896 2.33011 @@ -5337,21 +4984,15 @@ Locus7961 4785375 0.3 0.0210143 0.0125579 0.514855 Locus7964 4787194 0.3 0.022448 0.0127856 0.562882 Locus7965 4788032 0.72 0.0124877 0.0269535 -0.769369 Locus7966 4788078 0.28 0.0269535 0.0124877 0.769369 -Locus7969 4789894 0.12 0.035162 0.00939925 1.31934 -Locus7970 4790225 0.12 0.035162 0.00939925 1.31934 Locus7971 4790313 0.72 0.0123182 0.027734 -0.811578 Locus7972 4790467 0.44 0.0186008 0.0118839 0.448019 Locus7973 4791348 0.28 0.0439258 0.00856638 1.63466 -Locus7975 4792331 0.18 0.0471045 0.00918066 1.63527 Locus7976 4792675 0.4 0.0151849 0.0147324 0.0302519 Locus7977 4793195 0.44 0.0150054 0.0166952 -0.10671 -Locus7978 4793343 0.16 0.0688887 0.00948166 1.98313 Locus7979 4794437 0.5 0.0159913 0.0206821 -0.257225 Locus7981 4794672 0.5 0.0211506 0.0159913 0.279624 Locus7982 4795605 0.5 0.0159913 0.0211506 -0.279624 Locus7988 4800028 0.38 0.0324986 0.0154402 0.744223 -Locus7989 4801016 0.16 0.0688887 0.0134553 1.63312 -Locus7992 4802443 0.18 0.0547526 0.0144812 1.32997 Locus7996 4803867 0.18 0.0349083 0.0129166 0.994211 Locus7998 4804203 0.78 0.0159356 0.0313961 -0.678129 Locus8000 4804865 0.78 0.0159356 0.0315365 -0.682593 @@ -5359,7 +5000,6 @@ Locus8003 4805393 0.22 0.0315365 0.0167568 0.63234 Locus8004 4805599 0.22 0.0315365 0.0167568 0.63234 Locus8005 4805877 0.22 0.0315365 0.0167568 0.63234 Locus8006 4805974 0.22 0.0315365 0.0167568 0.63234 -Locus8008 4806642 0.18 0.0583454 0.0140355 1.42479 Locus8009 4806759 0.22 0.0314039 0.0167568 0.628126 Locus8010 4807289 0.3 0.0321415 0.0183177 0.562278 Locus8011 4807557 0.3 0.0321415 0.0183177 0.562278 @@ -5372,10 +5012,8 @@ Locus8021 4812399 0.42 0.0163195 0.0289157 -0.572025 Locus8023 4814755 0.54 0.0319962 0.014145 0.816252 Locus8024 4814805 0.06 0.089492 0.0109115 2.10433 Locus8026 4816520 0.44 0.0161598 0.0303456 -0.630124 -Locus8028 4817627 0.06 0.258829 0.0115219 3.11192 Locus8029 4817796 0.58 0.0288904 0.0166509 0.551044 Locus8030 4817833 0.58 0.0288904 0.0166509 0.551044 -Locus8031 4818457 0.18 0.0595357 0.0136173 1.47523 Locus8032 4819032 0.56 0.0307509 0.0140059 0.786442 Locus8033 4819798 0.56 0.0307509 0.0140059 0.786442 Locus8034 4820064 0.76 0.0168948 0.0291132 -0.544186 @@ -5390,12 +5028,10 @@ Locus8043 4826278 0.82 0.0146477 0.0461488 -1.14759 Locus8047 4828628 0.74 0.01656 0.0236062 -0.354519 Locus8048 4828971 0.26 0.0236062 0.01656 0.354519 Locus8049 4830189 0.52 0.0200957 0.0225477 -0.115126 -Locus8050 4831387 0.16 0.147549 0.0103199 2.66009 Locus8051 4834018 0.42 0.0334422 0.0131386 0.934266 Locus8052 4834785 0.06 0.0169964 0.0103202 0.498895 Locus8055 4835554 0.12 0.0602453 0.0104882 1.74818 Locus8056 4836810 0.36 0.0305473 0.0153099 0.690777 -Locus8057 4836844 0.08 0.125301 0.00905974 2.62688 Locus8059 4838563 0.36 0.0305473 0.0152353 0.695658 Locus8060 4839397 0.06 0.130638 0.00882636 2.69469 Locus8061 4839717 0.34 0.0348937 0.0130374 0.984481 @@ -5419,11 +5055,7 @@ Locus8088 4850036 0.08 0.098536 0.00939313 2.35044 Locus8089 4850169 0.3 0.0422837 0.0108723 1.35818 Locus8090 4850229 0.08 0.0955908 0.00850035 2.41997 Locus8091 4850802 0.3 0.0422837 0.0121013 1.25109 -Locus8093 4852483 0.1 0.675254 0.00844195 4.38187 -Locus8095 4853013 0.26 0.0482924 0.0112548 1.45648 -Locus8096 4853756 0.08 0.288723 0.00897548 3.47097 Locus8103 4857906 0.68 0.0155082 0.0281264 -0.595341 -Locus8105 4859192 0.1 0.0822967 0.0109301 2.01881 Locus8106 4860172 0.06 0.173669 0.0101053 2.84409 Locus8108 4861727 0.34 0.0340998 0.0125678 0.998152 Locus8110 4864301 0.06 0.0153993 0.0121505 0.236947 @@ -5433,20 +5065,11 @@ Locus8114 4868784 0.36 0.0332598 0.0136861 0.887972 Locus8116 4871589 0.08 0.0720287 0.012364 1.76228 Locus8118 4872661 0.72 0.0174197 0.029981 -0.54296 Locus8120 4874307 0.36 0.0405293 0.0150313 0.991889 -Locus8122 4877992 0.1 0.214965 0.0158803 2.6054 -Locus8123 4879204 0.06 0.261742 0.0151781 2.84751 -Locus8126 4883429 0.26 0.0361056 0.0147881 0.892628 -Locus8128 4884171 0.74 0.0145227 0.0361056 -0.910734 Locus8129 4884502 0.36 0.0343871 0.0115101 1.09446 Locus8130 4885070 0.36 0.0285661 0.0141381 0.703346 Locus8132 4887281 0.52 0.0141499 0.0273171 -0.657809 -Locus8133 4887572 0.1 0.0808091 0.00879383 2.21804 Locus8134 4887607 0.24 0.0639569 0.00788512 2.09323 Locus8135 4887656 0.3 0.0478497 0.0097667 1.58909 -Locus8136 4888911 0.2 0.0579626 0.011985 1.57614 -Locus8137 4888949 0.8 0.011985 0.0579626 -1.57614 -Locus8138 4889198 0.8 0.011985 0.0579626 -1.57614 -Locus8139 4889386 0.2 0.0579626 0.011985 1.57614 Locus8140 4890296 0.1 0.0730613 0.0107229 1.91892 Locus8141 4890761 0.1 0.0730613 0.0107229 1.91892 Locus8142 4890870 0.9 0.0107229 0.0730613 -1.91892 @@ -5455,120 +5078,26 @@ Locus8144 4891156 0.54 0.0213632 0.0180543 0.168288 Locus8145 4892172 0.08 0.0720287 0.00923291 2.05429 Locus8146 4892727 0.1 0.0730613 0.0100999 1.97877 Locus8147 4893465 0.4 0.0300402 0.0130434 0.834258 -Locus8148 4893535 0.06 0.184744 0.00966028 2.95095 -Locus8149 4895439 0.14 0.0613064 0.0114885 1.67454 Locus8150 4895629 0.2 0.0281863 0.0137108 0.720649 Locus8151 4897453 0.24 0.0252977 0.0149804 0.523972 Locus8152 4899799 0.24 0.0252977 0.0149804 0.523972 Locus8154 4900419 0.3 0.0478497 0.00961252 1.605 Locus8157 4901485 0.54 0.0208118 0.0188676 0.0980737 Locus8158 4902429 0.36 0.0180943 0.0175755 0.0290912 -Locus8159 4902475 0.1 0.214965 0.0101222 3.05574 -Locus8160 4904142 0.66 0.0212099 0.0211147 0.00449918 -Locus8161 4904215 0.66 0.0212099 0.0211147 0.00449918 -Locus8164 4907557 0.3 0.0228915 0.0198932 0.140389 Locus8166 4908664 0.3 0.0250428 0.0160293 0.44617 -Locus8167 4910565 0.18 0.0577601 0.0127504 1.51073 -Locus8168 4911421 0.24 0.0267305 0.0167754 0.465892 -Locus8169 4912187 0.24 0.0267305 0.0167754 0.465892 -Locus8171 4914801 0.16 0.0383726 0.013184 1.06833 Locus8174 4915937 0.46 0.0289645 0.0128847 0.810032 -Locus8177 4918387 0.18 0.105651 0.0104616 2.31243 Locus8178 4919230 0.06 0.0269021 0.00959608 1.03085 -Locus8179 4920731 0.3 0.0227151 0.0144217 0.454296 Locus8180 4920914 0.64 0.0170383 0.0149185 0.132859 -Locus8182 4923137 0.2 0.050549 0.00882605 1.74524 -Locus8183 4923153 0.3 0.0227151 0.0173069 0.271928 Locus8184 4923798 0.06 0.106151 0.0104016 2.3229 -Locus8185 4924282 0.06 0.204002 0.0106009 2.95719 -Locus8186 4924754 0.24 0.0287366 0.0149874 0.650964 -Locus8187 4925089 0.24 0.0287366 0.0149874 0.650964 Locus8189 4929302 0.94 0.0112873 0.0269021 -0.868522 Locus8191 4930273 0.06 0.0269021 0.0111101 0.884348 -Locus8192 4930400 0.24 0.0580378 0.00973613 1.78525 Locus8193 4931289 0.58 0.0200695 0.0155685 0.253949 -Locus8194 4932303 0.08 0.143231 0.00995634 2.66625 Locus8195 4933449 0.06 0.0562557 0.00976397 1.75121 -Locus8196 4933932 0.18 0.0336913 0.0125048 0.991129 Locus8197 4934702 0.56 0.0215724 0.0135777 0.462984 Locus8199 4936824 0.56 0.0215191 0.0135777 0.46051 Locus8201 4937418 0.06 0.0557886 0.00912752 1.81027 -Locus8202 4937423 0.2 0.0237352 0.0118889 0.691352 -Locus8205 4939088 0.62 0.0210562 0.0150334 0.336919 Locus8206 4939251 0.06 0.102567 0.0107602 2.25466 -Locus8209 4941503 0.3 0.024123 0.0185056 0.265092 -Locus8210 4942518 0.58 0.0263564 0.0147852 0.578083 Locus8212 4943167 0.06 0.102567 0.0125906 2.09757 Locus8213 4943708 0.06 0.102567 0.0125906 2.09757 Locus8214 4944142 0.06 0.102567 0.0125906 2.09757 -Locus8215 4944293 0.08 0.150925 0.0118361 2.54563 -Locus8217 4946218 0.62 0.0216282 0.0178667 0.191057 -Locus8218 4947595 0.12 0.15627 0.0120067 2.56611 Locus8220 4949191 0.06 0.102567 0.0121676 2.13174 -Locus8222 4949925 0.06 0.0289249 0.0122913 0.855816 -Locus8224 4951136 0.5 0.0323284 0.0096542 1.20855 -Locus8226 4951276 0.28 0.022517 0.0179015 0.229384 -Locus8227 4951782 0.34 0.0183735 0.0212521 -0.145544 -Locus8228 4951926 0.06 0.060251 0.0151691 1.37926 -Locus8231 4954388 0.06 0.060251 0.0152932 1.37111 -Locus8233 4956626 0.94 0.0153374 0.060251 -1.36822 -Locus8238 4959379 0.06 0.060251 0.0149941 1.39086 -Locus8240 4960558 0.64 0.0234621 0.012759 0.609148 -Locus8241 4960797 0.3 0.0185752 0.019699 -0.0587438 -Locus8242 4960821 0.36 0.0126781 0.0234621 -0.615507 -Locus8243 4961848 0.3 0.0185752 0.0198583 -0.0667991 -Locus8245 4962715 0.06 0.060251 0.0126612 1.55998 -Locus8246 4963365 0.3 0.051775 0.00960749 1.68436 -Locus8247 4963940 0.26 0.012911 0.0166303 -0.253146 -Locus8248 4964049 0.74 0.0166303 0.012911 0.253146 -Locus8250 4965662 0.26 0.0130144 0.0166303 -0.245168 -Locus8252 4966452 0.74 0.0164293 0.0130144 0.233011 -Locus8253 4966736 0.24 0.0149634 0.0159067 -0.0611303 -Locus8254 4968232 0.24 0.0149634 0.0159067 -0.0611303 -Locus8255 4968290 0.06 0.060251 0.0106784 1.7303 -Locus8256 4968513 0.78 0.0153742 0.014335 0.0699876 -Locus8257 4969118 0.82 0.0116106 0.0334601 -1.05843 -Locus8258 4969143 0.06 0.060251 0.00975986 1.82024 -Locus8259 4970453 0.18 0.0334601 0.0117402 1.04734 -Locus8261 4970704 0.18 0.0334601 0.0117172 1.04929 -Locus8262 4970901 0.26 0.077613 0.00700885 2.40456 -Locus8263 4971107 0.1 0.0832286 0.00984263 2.13487 -Locus8264 4971839 0.06 0.060251 0.00944514 1.85302 -Locus8265 4971846 0.18 0.0334601 0.0116454 1.05545 -Locus8266 4972430 0.18 0.0334601 0.0116454 1.05545 -Locus8267 4973481 0.62 0.0165971 0.0149399 0.105196 -Locus8269 4973798 0.2 0.0441886 0.0110167 1.38906 -Locus8270 4973995 0.6 0.0173071 0.0154103 0.116081 -Locus8272 4974292 0.6 0.0173071 0.0154018 0.116634 -Locus8273 4974498 0.1 0.0832286 0.00954411 2.16567 -Locus8275 4975017 0.6 0.0169675 0.0155147 0.0895128 -Locus8278 4976388 0.12 0.0516655 0.0105078 1.59267 -Locus8279 4976395 0.38 0.01708 0.0180868 -0.0572719 -Locus8280 4976598 0.06 1.93594 0.0088384 5.38924 -Locus8281 4976915 0.64 0.0146412 0.0174662 -0.176432 -Locus8283 4977063 0.36 0.0166628 0.0146412 0.12934 -Locus8284 4978357 0.62 0.0148105 0.0143289 0.033054 -Locus8285 4978430 0.38 0.0143289 0.0148105 -0.033054 -Locus8288 4979627 0.14 0.0705619 0.0110127 1.85744 -Locus8290 4981353 0.82 0.0122401 0.0470179 -1.34581 -Locus8293 4981717 0.18 0.043415 0.0124174 1.25171 -Locus8294 4981817 0.08 0.97927 0.00914236 4.67389 -Locus8295 4982065 0.82 0.012115 0.043415 -1.27636 -Locus8296 4982245 0.76 0.0135985 0.0200293 -0.387236 -Locus8297 4982334 0.18 0.043415 0.0121102 1.27675 -Locus8299 4984988 0.06 0.0321153 0.00951151 1.21683 -Locus8300 4985436 0.82 0.0117143 0.043415 -1.30999 -Locus8301 4985448 0.06 0.060251 0.00887702 1.91505 -Locus8303 4986282 0.82 0.0112628 0.043415 -1.3493 -Locus8304 4986627 0.82 0.0112628 0.043415 -1.3493 -Locus8305 4986847 0.2 0.0243103 0.0105012 0.839406 -Locus8309 4988881 0.12 0.0120509 0.00952944 0.234755 -Locus8310 4989485 0.14 0.0342727 0.00826912 1.42182 -Locus8311 4990487 0.48 0.0174887 0.00749915 0.846767 -Locus8312 4991177 0.24 0.0560701 0.00930956 1.79556 -Locus8313 4992637 0.64 0.0122546 0.0118491 0.0336489 -Locus8314 4993092 0.18 0.0718075 0.00609933 2.46581 -Locus8316 4994609 0.16 0.0538401 0.00706216 2.03127 -Locus8317 4995163 0.66 0.0101005 0.0131827 -0.266322 -Locus8318 4995750 0.4 0.0125847 0.0106202 0.169724 -Locus8321 4996452 0.56 0.0106388 0.010247 0.0375211