header of output by norm

[QianXiaobo]

Hi there,

I used norm to normalize ihs output by norm --ihs --bp-win --min-snps 10 --winsize 100000 --files chr{1..22}.ihs.out.
e.g.

17300001        17400001        31      0       100     1
17400001        17500001        142     0.0211268       100     2

I guess it means <start> <end> <number of snps> <frac of extreme score> <x% top> <???>.
My question is what is the last column meaning? I am sorry I can't find the explaining in manual.

Could you please add header for other scores from norm? If it already there but I missed, I am very sorry for that.

Bests,
Xiaobo

[szpiech]

Hello, Sorry about this. This is supposed to be the maximum absolute iHS score found in this window, although it is a little buggy at the moment. It currently outputs this as a truncated integer instead of a floating point value.

…

-Zachary

On Thu, Apr 11, 2024 at 11:32 PM XB ***@***.***> wrote: Hi there, I used norm to normalize ihs output by norm --ihs --bp-win --min-snps 10 --winsize 100000 --files chr{1..22}.ihs.out. e.g. 17300001 17400001 31 0 100 1 17400001 17500001 142 0.0211268 100 2 I guess it means <start> <end> <number of snps> <frac of extreme score> <x% top> <???>. My question is what is the last column meaning? I am sorry I can't find the explaining in manual. Could you please add header for other scores from norm? If it already there but I missed, I am very sorry for that. Bests, Xiaobo — Reply to this email directly, view it on GitHub <#109>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ABAKRQTVSLEVEPBOWXAQ4WDY45IURAVCNFSM6AAAAABGDMQVUSVHI2DSMVQWIX3LMV43ASLTON2WKOZSGIZTQOJXHE4DAMY> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>