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Running with other references #13

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vymao opened this issue Aug 5, 2020 · 1 comment

vymao commented Aug 5, 2020

Is it possible to run this package with other common references (hg19, b37, etc.)?

sternp commented Aug 25, 2020 •

edited

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I'm also interested in this given that I cannot run it using grch37 it seems:

scar_score("/HRD_score/test.seqz.gz", reference = "grch37", seqz=TRUE, chr.in.names = FALSE)

Preprocessing started...
Collecting GC information ...... done

Error in split.default(lis_obj, names(lis_obj)) : 
  first argument must be a vector

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