Collecting GC information Error in (function (x, col_types)

[deb0612]

Dear sir,
I ran sacrHRD normally untill recent months.
The error message below:

Is that the R version or any update ?

[seetarajpara]

I've also been getting this error, never experienced it before...

[s-juross]

I've been getting this error too...
The error appears in the function chunk.apply().
Calls: scar_score ... preprocess.seqz -> sequenza.extract -> gc.sample.stats -> chunk.apply
Do you have a solution now?

[nr23730]

The problem is that the iotools package changed it's API. The sequenza package that scarHRD relies on uses it.
I pushed a hotfix release here: https://github.com/buschlab/sequenza that you can install using devtools::install_github("buschlab/sequenza", build_vignettes = FALSE).
Other option would be to downgrade iotools to 0.3-2.

[Frank9938]

The problem is that the iotools package changed it's API. The sequenza package that scarHRD relies on uses it. I pushed a hotfix release here: https://github.com/buschlab/sequenza that you can install using devtools::install_github("buschlab/sequenza", build_vignettes = FALSE). Other option would be to downgrade iotools to 0.3-2.

That was very helpful, thank you!