Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Error in Vroom connection size ! #31

Open
biogenie opened this issue Feb 9, 2024 · 0 comments
Open

Error in Vroom connection size ! #31

biogenie opened this issue Feb 9, 2024 · 0 comments

Comments

@biogenie
Copy link

biogenie commented Feb 9, 2024

Hi all, I ran scarHRD normally for my seqz files.I've been getting this error. I updated my R and R studio. I also increased my Vroom connection size as Sys.setenv(VROOM_CONNECTION_SIZE = 131072*3), still I'm getting this error
The error is as follows:

Preprocessing started...
Collecting GC information ............... done

Processing chr1:
7 variant calls.
3 copy-number segments.
397 heterozygous positions.
793879 homozygous positions.
Processing chr2:
Error: The size of the connection buffer (393216) was not large enough
to fit a complete line:

  • Increase it by setting Sys.setenv("VROOM_CONNECTION_SIZE")
    In addition: There were 50 or more warnings (use warnings () to see the first 50)

Also, if I increase the size VROOM_CONNECTION_SIZE = 131072*10000), Im facing this error.

Processing chr1:
Error: cannot create std:vector larger than max_size()

Kindly anyone helpme in this!!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant