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hrd-sum of test1.small.seqz.gz not the same as it on introduction #8

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miffity999 opened this issue Feb 21, 2020 · 0 comments

miffity999 commented Feb 21, 2020

Hi
I am trying to run an example data, test1.small.seqz.gz. The result from web is different from what i got. I am wrong in some steps?

The commands i used is:
library("scarHRD")
scar_score("test2.txt",reference = "grch38", seqz=FALSE)

my result is
HRD Telomeric AI LST HRD-sum
[1,] 2 2 3 7

the result on introduction is

HRD Telomeric AI LST HRD-sum

[1,] 1 2 0 3

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