Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Perfect hospital (seekers) and death observations #85

Merged
merged 26 commits into from
Jun 9, 2020
Merged

Perfect hospital (seekers) and death observations #85

merged 26 commits into from
Jun 9, 2020

Conversation

agarbuno
Copy link
Collaborator

@agarbuno agarbuno commented Jun 5, 2020

This should take care of adding death and hospital records. Though these are not perfect observations (spec = sens = 0.999).

@agarbuno agarbuno linked an issue Jun 5, 2020 that may be closed by this pull request
Extending the simulate_idealized_NYC_epidemic_with_DA.py example #83
Open
5 tasks
odunbar and others added 24 commits June 7, 2020 17:30
@odunbar
added DataObservation class and found bug in data assimilation loop
9a70465
@agarbuno
small changes and fixed captions
9fc6200
@odunbar
simple sum_to_one() function added
778c16a
@agarbuno
changed parameters in file
f59155a
@agarbuno
Merge branch 'ag/multiple-tests' of https://github.com/dburov190/risk…
e65917c 
…-networks into ag/multiple-tests
@odunbar
added a hack to fix the prevalance and variance when taking perfect o…
2401bd7 
…bservations
@agarbuno
small edits
b7597e8
@agarbuno
Merge branch 'ag/multiple-tests' of https://github.com/dburov190/risk…
3467a5c 
…-networks into ag/multiple-tests
@agarbuno
fixed hack on perftectly observed observations in probability space
c9b8f76
@agarbuno
fixed bug: truth state as probs for da
c35d183
@agarbuno
just before a node based observation class
b6b2d45
@agarbuno
created new observation type based on perfect record
706f987
@agarbuno
fixed bug in observed variances for perfect observations
d8dabdb
@agarbuno
test with node informed states: H and D
5d291ac
@odunbar
added observation dependent sum_to_one() and revert to DataObservation
47c8059
@odunbar
commented print statements for sum_to_one testing
c0fec96
@agarbuno
small changes to measurements edge values
41963ca
@odunbar
removed chaff from DataObservation, set observed means in perfect set…
43a6203 
…ting consistent with logit transform
@agarbuno
resolved conflicts
c5134a4
@agarbuno
fixed perfect testing for record based observations: do not use mean …
e0809ff 
…= 1.
@agarbuno
turn off assimilated state printing
68ccf1f
@agarbuno
no model error in the epidemic da example
3b5c3e2
@agarbuno
towards parameters plots
f6baab6
@agarbuno
perfect observations with observed variances
f65672a
@agarbuno agarbuno changed the title WIP: (almost) perfect hospital (seekers) / death observations Perfect hospital (seekers) and death observations Jun 9, 2020
@agarbuno agarbuno merged commit 94b26ee into master Jun 9, 2020
@agarbuno agarbuno deleted the ag/multiple-tests branch June 9, 2020 23:56
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers

@odunbar odunbar odunbar left review comments

Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.

Extending the simulate_idealized_NYC_epidemic_with_DA.py example
2 participants
@agarbuno @odunbar