forked from obophenotype/biological-spatial-ontology
-
Notifications
You must be signed in to change notification settings - Fork 0
/
bspo.obo
1977 lines (1767 loc) · 70.6 KB
/
bspo.obo
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
format-version: 1.2
data-version: releases/2020-05-11
date: 11:05:2020 13:57
synonymtypedef: human "synonym typically used in the context of human anatomy" NARROW
synonymtypedef: vertebrate "synonym typically used in the context of vertebrate anatomy" NARROW
default-namespace: spatial
namespace-id-rule: * BSPO:$sequence(7,0,999999999)$
remark: based on FBql
ontology: bspo
owl-axioms: Prefix(owl:=<http://www.w3.org/2002/07/owl#>)\nPrefix(rdf:=<http://www.w3.org/1999/02/22-rdf-syntax-ns#>)\nPrefix(xml:=<http://www.w3.org/XML/1998/namespace>)\nPrefix(xsd:=<http://www.w3.org/2001/XMLSchema#>)\nPrefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)\n\n\nOntology(\nDeclaration(Class(<http://purl.obolibrary.org/obo/BSPO_00000021>))\nDeclaration(Class(<http://purl.obolibrary.org/obo/CARO_0000000>))\n############################\n# Classes\n############################\n\n# Class: <http://purl.obolibrary.org/obo/BSPO_00000021> (deep-superficial gradient (obsolete))\n\nSubClassOf(<http://purl.obolibrary.org/obo/BSPO_00000021> owl:Thing)\n\n# Class: <http://purl.obolibrary.org/obo/CARO_0000000> (anatomical entity)\n\nSubClassOf(<http://purl.obolibrary.org/obo/CARO_0000000> owl:Thing)\n\n\n)
[Term]
id: BSPO:0000000
name: left side
def: "The side of an organism that is left of the sagittal plane." [BSPO:cjm]
synonym: "left" EXACT []
is_a: BSPO:0000054 ! anatomical side
relationship: left_of BSPO:0000007 ! right side
relationship: starts_axis BSPO:0000017 ! left-right axis
[Term]
id: BSPO:0000001
name: upper side
comment: Consider merging with superior side.
synonym: "upper" EXACT []
is_a: BSPO:0000054 ! anatomical side
relationship: starts_axis BSPO:0000011 ! upper-lower axis
[Term]
id: BSPO:0000002
name: lower side
comment: Consider merging with inferior side.
synonym: "lower" EXACT []
is_a: BSPO:0000054 ! anatomical side
relationship: finishes_axis BSPO:0000011 ! upper-lower axis
[Term]
id: BSPO:00000021
name: deep-superficial gradient (obsolete)
comment: was made obsolete because the ID had too many digits
is_obsolete: true
replaced_by: BSPO:0000021
[Term]
id: BSPO:0000003
name: deep side
synonym: "deep" EXACT []
is_a: BSPO:0000054 ! anatomical side
relationship: deep_to BSPO:0000004 ! superficial side
relationship: starts_axis BSPO:0000012 ! deep-superficial axis
[Term]
id: BSPO:0000004
name: superficial side
synonym: "superficial" EXACT []
is_a: BSPO:0000054 ! anatomical side
relationship: finishes_axis BSPO:0000012 ! deep-superficial axis
[Term]
id: BSPO:0000005
name: anatomical surface
def: "A 2D surface of an anatomical continuant." [BSPO:cjm]
comment: to be merged into CARO
synonym: "surface" EXACT []
xref: FMA:24137
is_a: CARO:0000010 ! anatomical boundary
[Term]
id: BSPO:0000006
name: anatomical margin
def: "Fiat anatomical region extending a short distance from the boundary of an object inwards." [BSPO:cjm]
synonym: "edge" EXACT []
synonym: "margin" EXACT []
is_a: BSPO:0000070 ! anatomical region
[Term]
id: BSPO:0000007
name: right side
def: "The side of an organism that is right of the sagittal plane." [BSPO:cjm, BSPO:wd]
synonym: "right" EXACT []
is_a: BSPO:0000054 ! anatomical side
relationship: finishes_axis BSPO:0000017 ! left-right axis
[Term]
id: BSPO:0000008
name: parasagittal plane
def: "Sagittal plane that divides a bilateral body into unequal left and right parts." [BSPO:mah]
synonym: "parasagittal section" EXACT []
is_a: BSPO:0000417 ! sagittal plane
[Term]
id: BSPO:0000009
name: midsagittal plane
def: "Sagittal plane that divides bilateral body into equal left and right parts." [BSPO:mah]
comment: only in bilaterally symmetrical organisms
synonym: "median plane" RELATED []
synonym: "median sagittal plane" EXACT [FMA:74563]
synonym: "midline plane" EXACT []
synonym: "midsagittal section" EXACT []
xref: FMA:74563
is_a: BSPO:0000417 ! sagittal plane
[Term]
id: BSPO:0000010
name: anatomical axis
def: "A straight line through space, intersecting an anatomical entity." [BSPO:cjm]
comment: Axis directions are defined in terms of axes.
xref: http://upload.wikimedia.org/wikipedia/commons/3/34/Anatomical_Directions_and_Axes.JPG
is_a: CARO:0000008 ! anatomical line
relationship: passes_through CARO:0000000 ! anatomical entity
[Term]
id: BSPO:0000011
name: upper-lower axis
def: "An anatomical axis determined by gravity." [BSPO:cjm]
synonym: "superior-inferior axis" RELATED []
is_a: BSPO:0000010 ! anatomical axis
[Term]
id: BSPO:0000012
name: deep-superficial axis
def: "An axis that extends from an internal position to a more external position in the body or body part." [BSPO:PM]
comment: Muscles are frequently categorized as 'deep', 'intermediate', and 'superficial'.
is_a: BSPO:0000010 ! anatomical axis
[Term]
id: BSPO:0000013
name: anterior-posterior axis
def: "An axis that extends through an organism from head end to opposite end of body or tail." [BSPO:cjm]
comment: In sponges, AP is used to indicate the direction of movement [in larval stage] (as it is in other metazoans that move, e.g., the basal bilaterians). [PM]
synonym: "A-P axis" EXACT []
synonym: "anteroposterior axis" EXACT []
synonym: "AP axis" EXACT []
synonym: "cephalocaudal axis" NARROW [http://en.wikipedia.org/wiki/Anatomical_terms_of_location]
synonym: "craniocaudal axis" NARROW vertebrate []
synonym: "longitudinal axis" RELATED []
synonym: "rostral/caudal" NARROW vertebrate []
synonym: "rostrocaudal axis" NARROW vertebrate []
is_a: BSPO:0000010 ! anatomical axis
intersection_of: BSPO:0000010 ! anatomical axis
intersection_of: orthogonal_to BSPO:0000018 ! transverse plane
relationship: approximately_perpendicular_to BSPO:0000016 ! dorsal-ventral axis
relationship: orthogonal_to BSPO:0000018 ! transverse plane
[Term]
id: BSPO:0000014
name: apical-basal axis relative to substrate
def: "An axis that extends through an organism or organism part from the part of the organism or organism part attached to a substrate (basal) to the furthest from the attachment (apical). Note that the apical-basal axis is often used for organismal parts where there is attachment via a basal lamina or other structure." [BSPO:mah]
synonym: "apical/basal" EXACT []
synonym: "longitudinal axis" RELATED []
is_a: BSPO:0000010 ! anatomical axis
[Term]
id: BSPO:0000015
name: proximal-distal axis
def: "An axis that extends from the point of attachment of a structure (proximal) to the point furthest away from the plane of attachment (distal)." [BSPO:curators, http://en.wikipedia.org/wiki/Anatomical_terms_of_location]
comment: In some communities, proximal and distal are used when specifying the position of parts of elements that are contained within the body, such as gill arches or vertebral spines. In these cases, use of the classes medial-lateral axis or medial-external axis are more appropriate.
synonym: "proximal/distal" EXACT []
synonym: "proximodistal" EXACT []
is_a: BSPO:0000010 ! anatomical axis
[Term]
id: BSPO:0000016
name: dorsal-ventral axis
def: "An axis that is approximately perpendicular to the anterior-posterior axis and that extends through the horizontal plane of the body." [BSPO:curators]
synonym: "anterior-posterior axis" NARROW human []
synonym: "D-V axis" EXACT []
synonym: "dorsoventral axis" EXACT []
synonym: "DV axis" EXACT []
is_a: BSPO:0000010 ! anatomical axis
intersection_of: BSPO:0000010 ! anatomical axis
intersection_of: orthogonal_to BSPO:0000019 ! horizontal plane
relationship: orthogonal_to BSPO:0000019 ! horizontal plane
[Term]
id: BSPO:0000017
name: left-right axis
def: "An axis that bisects an organism from left to right sides of body, through a sagittal plane." [BSPO:cjm]
synonym: "dextro-sinister axis" EXACT []
synonym: "L-R axis" EXACT []
synonym: "left to right axis" EXACT []
synonym: "LR axis" EXACT []
synonym: "R-L axis" EXACT []
synonym: "right to left axis" EXACT []
synonym: "right-left axis" EXACT []
synonym: "RL axis" EXACT []
is_a: BSPO:0000010 ! anatomical axis
intersection_of: BSPO:0000010 ! anatomical axis
intersection_of: orthogonal_to BSPO:0000417 ! sagittal plane
relationship: orthogonal_to BSPO:0000417 ! sagittal plane
[Term]
id: BSPO:0000018
name: transverse plane
def: "Anatomical plane that divides body into anterior and posterior parts." [BSPO:mah]
synonym: "axial plane" EXACT []
synonym: "axial section" EXACT []
synonym: "cross-section" RELATED []
synonym: "transverse section" EXACT []
xref: FMA:12247
is_a: BSPO:0000400 ! anatomical plane
[Term]
id: BSPO:0000019
name: horizontal plane
def: "Anatomical plane that divides bilateral body into dorsal and ventral parts." [BSPO:mah]
synonym: "coronal section" RELATED []
synonym: "frontal plane" EXACT []
synonym: "frontal section" RELATED []
synonym: "horizontal anatomical plane" EXACT [FMA:52810]
synonym: "horizontal section" EXACT []
xref: FMA:52810
is_a: BSPO:0000400 ! anatomical plane
[Term]
id: BSPO:0000020
name: upper-lower gradient
def: "Anatomical gradient that is distributed along the upper-lower axis." [BSPO:wd]
is_a: BSPO:0000051 ! anatomical gradient
intersection_of: BSPO:0000051 ! anatomical gradient
intersection_of: follows_axis BSPO:0000011 ! upper-lower axis
relationship: follows_axis BSPO:0000011 ! upper-lower axis
[Term]
id: BSPO:0000021
name: deep-superficial gradient
def: "Anatomical gradient that is distributed along the deep-superficial axis." [BSPO:wd]
is_a: BSPO:0000051 ! anatomical gradient
intersection_of: BSPO:0000051 ! anatomical gradient
intersection_of: follows_axis BSPO:0000012 ! deep-superficial axis
relationship: follows_axis BSPO:0000012 ! deep-superficial axis
[Term]
id: BSPO:0000022
name: superior side
def: "The side that is higher relative to the substrate." [BSPO:curators]
synonym: "cranial" RELATED []
synonym: "superior" EXACT []
is_a: BSPO:0000054 ! anatomical side
[Term]
id: BSPO:0000023
name: apical-basal gradient
def: "Anatomical gradient that is distributed along the apical-basal axis." [BSPO:wd]
is_a: BSPO:0000051 ! anatomical gradient
intersection_of: BSPO:0000051 ! anatomical gradient
intersection_of: follows_axis BSPO:0000014 ! apical-basal axis relative to substrate
relationship: follows_axis BSPO:0000014 ! apical-basal axis relative to substrate
[Term]
id: BSPO:0000024
name: proximal-distal gradient
def: "Anatomical gradient that is distributed along the proximal-distal axis." [BSPO:wd]
is_a: BSPO:0000051 ! anatomical gradient
intersection_of: BSPO:0000051 ! anatomical gradient
intersection_of: follows_axis BSPO:0000015 ! proximal-distal axis
relationship: follows_axis BSPO:0000015 ! proximal-distal axis
[Term]
id: BSPO:0000025
name: inferior side
def: "The side that is lower relative to the substrate." [BSPO:curators]
synonym: "caudal" RELATED []
synonym: "inferior" EXACT []
is_a: BSPO:0000054 ! anatomical side
[Term]
id: BSPO:0000026
name: antero-dorsal region
def: "Anatomical region that overlaps the anterior and dorsal regions of a body or body part." [BSPO:wd]
synonym: "anterodorsal region " EXACT []
is_a: BSPO:0000071 ! anterior region
is_a: BSPO:0000079 ! dorsal region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000055 ! anterior side
intersection_of: overlaps BSPO:0000063 ! dorsal side
relationship: overlaps BSPO:0000055 ! anterior side
relationship: overlaps BSPO:0000063 ! dorsal side
created_by: Melissa Haendel
creation_date: 2009-06-15T01:01:38Z
[Term]
id: BSPO:0000027
name: antero-ventral region
def: "Anatomical region that overlaps the anterior and ventral regions of a body or body part." [BSPO:wd]
synonym: "anteroventral region " EXACT []
is_a: BSPO:0000071 ! anterior region
is_a: BSPO:0000084 ! ventral region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000055 ! anterior side
intersection_of: overlaps BSPO:0000068 ! ventral side
relationship: overlaps BSPO:0000055 ! anterior side
relationship: overlaps BSPO:0000068 ! ventral side
created_by: Melissa Haendel
creation_date: 2009-06-15T01:04:59Z
[Term]
id: BSPO:0000028
name: postero-lateral region
def: "Anatomical region that overlaps the posterior and lateral regions of the body or body part." [BSPO:wd]
synonym: "posterolateral region" EXACT []
is_a: BSPO:0000072 ! posterior region
is_a: BSPO:0000082 ! lateral region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000056 ! posterior side
intersection_of: overlaps BSPO:0000066 ! lateral side
relationship: overlaps BSPO:0000056 ! posterior side
relationship: overlaps BSPO:0000066 ! lateral side
created_by: Melissa Haendel
creation_date: 2009-06-15T01:06:01Z
[Term]
id: BSPO:0000029
name: antero-lateral region
def: "Anatomical region that overlaps the anterior and lateral regions of a body or body part." [BSPO:wd]
synonym: "anterolateral region" EXACT []
is_a: BSPO:0000071 ! anterior region
is_a: BSPO:0000082 ! lateral region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000055 ! anterior side
intersection_of: overlaps BSPO:0000066 ! lateral side
relationship: overlaps BSPO:0000055 ! anterior side
relationship: overlaps BSPO:0000066 ! lateral side
created_by: Melissa Haendel
creation_date: 2009-06-15T01:07:18Z
[Term]
id: BSPO:0000030
name: postero-dorsal region
def: "Anatomical region that overlaps the posterior and dorsal regions of the body or body part." [BSPO:wd]
synonym: "posterodorsal region" EXACT []
is_a: BSPO:0000072 ! posterior region
is_a: BSPO:0000079 ! dorsal region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000056 ! posterior side
intersection_of: overlaps BSPO:0000063 ! dorsal side
relationship: overlaps BSPO:0000056 ! posterior side
relationship: overlaps BSPO:0000063 ! dorsal side
created_by: Melissa Haendel
creation_date: 2009-06-15T01:08:13Z
[Term]
id: BSPO:0000031
name: upper region
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000001 ! upper side
relationship: overlaps BSPO:0000001 ! upper side
[Term]
id: BSPO:0000032
name: lower region
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000002 ! lower side
relationship: overlaps BSPO:0000002 ! lower side
[Term]
id: BSPO:0000033
name: deep region
def: "Anatomical region located deep within an organism or structure." [BSPO:wd]
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000003 ! deep side
relationship: overlaps BSPO:0000003 ! deep side
[Term]
id: BSPO:0000034
name: superficial region
def: "Anatomical region superficially located on the body or body part." [BSPO:wd]
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000004 ! superficial side
relationship: overlaps BSPO:0000004 ! superficial side
[Term]
id: BSPO:0000035
name: postero-ventral region
def: "Anatomical region that overlaps the posterior and ventral regions of a body or body part." [BSPO:wd]
synonym: "posteroventral region" EXACT []
is_a: BSPO:0000072 ! posterior region
is_a: BSPO:0000084 ! ventral region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000056 ! posterior side
intersection_of: overlaps BSPO:0000068 ! ventral side
relationship: overlaps BSPO:0000056 ! posterior side
relationship: overlaps BSPO:0000068 ! ventral side
created_by: Melissa Haendel
creation_date: 2009-06-15T01:08:38Z
[Term]
id: BSPO:0000036
name: anterior-most region
synonym: "anterior-most" EXACT []
synonym: "anteriormost" EXACT []
is_a: BSPO:0000071 ! anterior region
created_by: Melissa Haendel
creation_date: 2009-06-16T08:49:03Z
[Term]
id: BSPO:0000037
name: posterior-most region
synonym: "posterior-most" EXACT []
synonym: "posteriormost" EXACT []
is_a: BSPO:0000072 ! posterior region
created_by: Melissa Haendel
creation_date: 2009-06-16T08:49:50Z
[Term]
id: BSPO:0000038
name: dorsal-most region
synonym: "dorsal-most" EXACT []
synonym: "dorsalmost" EXACT []
is_a: BSPO:0000079 ! dorsal region
created_by: Melissa Haendel
creation_date: 2009-06-16T08:50:26Z
[Term]
id: BSPO:0000039
name: ventral-most region
synonym: "ventral-most" EXACT []
synonym: "ventralmost" EXACT []
is_a: BSPO:0000084 ! ventral region
created_by: Melissa Haendel
creation_date: 2009-06-16T08:51:07Z
[Term]
id: BSPO:0000040
name: upper/lower compartment boundary
is_a: BSPO:0000092 ! anatomical compartment boundary
intersection_of: BSPO:0000092 ! anatomical compartment boundary
intersection_of: has_axis BSPO:0000011 ! upper-lower axis
relationship: has_axis BSPO:0000011 ! upper-lower axis
[Term]
id: BSPO:0000041
name: deep/superficial compartment boundary
is_a: BSPO:0000092 ! anatomical compartment boundary
intersection_of: BSPO:0000092 ! anatomical compartment boundary
intersection_of: has_axis BSPO:0000012 ! deep-superficial axis
relationship: has_axis BSPO:0000012 ! deep-superficial axis
[Term]
id: BSPO:0000042
name: antero-medial margin
def: "Anatomical margin that is located on the antero-medial region of the body or body part." [BSPO:wd]
synonym: "anteromedial margin" EXACT []
is_a: BSPO:0000050 ! antero-medial region
is_a: BSPO:0000671 ! anterior margin
is_a: BSPO:0000683 ! medial margin
intersection_of: BSPO:0000006 ! anatomical margin
intersection_of: overlaps BSPO:0000055 ! anterior side
intersection_of: overlaps BSPO:0000067 ! medial side
relationship: overlaps BSPO:0000055 ! anterior side
relationship: overlaps BSPO:0000067 ! medial side
created_by: Melissa Haendel
creation_date: 2009-09-10T08:49:57Z
[Term]
id: BSPO:0000043
name: apical/basal compartment boundary
is_a: BSPO:0000092 ! anatomical compartment boundary
intersection_of: BSPO:0000092 ! anatomical compartment boundary
intersection_of: has_axis BSPO:0000014 ! apical-basal axis relative to substrate
relationship: has_axis BSPO:0000014 ! apical-basal axis relative to substrate
[Term]
id: BSPO:0000044
name: proximal/distal compartment boundary
is_a: BSPO:0000092 ! anatomical compartment boundary
intersection_of: BSPO:0000092 ! anatomical compartment boundary
intersection_of: has_axis BSPO:0000015 ! proximal-distal axis
relationship: has_axis BSPO:0000015 ! proximal-distal axis
[Term]
id: BSPO:0000045
name: antero-lateral margin
def: "Anatomical margin that is located on the antero-lateral region of the body or body part." [BSPO:wd]
synonym: "anterolateral margin" EXACT []
is_a: BSPO:0000029 ! antero-lateral region
is_a: BSPO:0000671 ! anterior margin
is_a: BSPO:0000682 ! lateral margin
intersection_of: BSPO:0000006 ! anatomical margin
intersection_of: overlaps BSPO:0000055 ! anterior side
intersection_of: overlaps BSPO:0000066 ! lateral side
relationship: overlaps BSPO:0000055 ! anterior side
relationship: overlaps BSPO:0000066 ! lateral side
created_by: Melissa Haendel
creation_date: 2009-09-10T08:50:37Z
[Term]
id: BSPO:0000046
name: postero-medial margin
def: "Anatomical margin that is located on the postero-medial region of the body or body part." [BSPO:wd]
synonym: "posteromedial margin" EXACT []
is_a: BSPO:0000064 ! postero-medial region
is_a: BSPO:0000672 ! posterior margin
is_a: BSPO:0000683 ! medial margin
intersection_of: BSPO:0000006 ! anatomical margin
intersection_of: overlaps BSPO:0000056 ! posterior side
intersection_of: overlaps BSPO:0000067 ! medial side
relationship: overlaps BSPO:0000056 ! posterior side
relationship: overlaps BSPO:0000067 ! medial side
created_by: Melissa Haendel
creation_date: 2009-09-10T08:51:07Z
[Term]
id: BSPO:0000047
name: postero-lateral margin
def: "Anatomical margin that is located on the postero-lateral region of the body or body part." [BSPO:wd]
synonym: "posterolateral margin" EXACT []
is_a: BSPO:0000028 ! postero-lateral region
is_a: BSPO:0000672 ! posterior margin
is_a: BSPO:0000682 ! lateral margin
intersection_of: BSPO:0000006 ! anatomical margin
intersection_of: overlaps BSPO:0000056 ! posterior side
intersection_of: overlaps BSPO:0000066 ! lateral side
relationship: overlaps BSPO:0000056 ! posterior side
relationship: overlaps BSPO:0000066 ! lateral side
created_by: Melissa Haendel
creation_date: 2009-09-10T08:51:42Z
[Term]
id: BSPO:0000048
name: dorso-medial margin
def: "Anatomical margin that is located on the dorso-medial region of the body or body part." [BSPO:wd]
synonym: "dorso-medial margin" EXACT []
is_a: BSPO:0000069 ! dorso-medial region
is_a: BSPO:0000679 ! dorsal margin
is_a: BSPO:0000683 ! medial margin
intersection_of: BSPO:0000006 ! anatomical margin
intersection_of: overlaps BSPO:0000063 ! dorsal side
intersection_of: overlaps BSPO:0000067 ! medial side
relationship: overlaps BSPO:0000063 ! dorsal side
relationship: overlaps BSPO:0000067 ! medial side
created_by: Melissa Haendel
creation_date: 2009-09-10T08:52:04Z
[Term]
id: BSPO:0000049
name: ventro-medial margin
def: "Anatomical margin that is located on the ventro-medial region of the body or body part." [BSPO:wd]
synonym: "ventromedial margin" EXACT []
is_a: BSPO:0000112 ! ventro-medial region
is_a: BSPO:0000683 ! medial margin
is_a: BSPO:0000684 ! ventral margin
intersection_of: BSPO:0000006 ! anatomical margin
intersection_of: overlaps BSPO:0000067 ! medial side
intersection_of: overlaps BSPO:0000068 ! ventral side
relationship: overlaps BSPO:0000067 ! medial side
relationship: overlaps BSPO:0000068 ! ventral side
created_by: Melissa Haendel
creation_date: 2009-09-10T08:52:48Z
[Term]
id: BSPO:0000050
name: antero-medial region
def: "Anatomical region that overlaps the anterior and medial regions of the body or body part." [BSPO:wd]
synonym: "anteromedial region" EXACT []
is_a: BSPO:0000071 ! anterior region
is_a: BSPO:0000083 ! medial region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000055 ! anterior side
intersection_of: overlaps BSPO:0000067 ! medial side
relationship: overlaps BSPO:0000055 ! anterior side
relationship: overlaps BSPO:0000067 ! medial side
created_by: Melissa Haendel
creation_date: 2009-09-10T08:55:32Z
[Term]
id: BSPO:0000051
name: anatomical gradient
def: "Material anatomical entity defined by change in the value of some quantity per unit of distance across some spatial axis." [BSPO:cjm]
xref: FBql:00005254
is_a: CARO:0000006 ! material anatomical entity
[Term]
id: BSPO:0000052
name: anterior-posterior gradient
def: "Anatomical gradient that is distributed along the anterior-posterior axis." [BSPO:wd]
xref: FBcv:0000142
xref: FBql:00005256
is_a: BSPO:0000051 ! anatomical gradient
intersection_of: BSPO:0000051 ! anatomical gradient
intersection_of: has_axis BSPO:0000013 ! anterior-posterior axis
relationship: has_axis BSPO:0000013 ! anterior-posterior axis
[Term]
id: BSPO:0000053
name: dorsal-ventral gradient
def: "Anatomical gradient that is distributed along the dorsal-ventral axis." [BSPO:wd]
xref: FBcv:0000143
xref: FBql:00005255
is_a: BSPO:0000051 ! anatomical gradient
intersection_of: BSPO:0000051 ! anatomical gradient
intersection_of: has_axis BSPO:0000016 ! dorsal-ventral axis
relationship: has_axis BSPO:0000016 ! dorsal-ventral axis
[Term]
id: BSPO:0000054
name: anatomical side
def: "An anatomical region bounded by a plane perpendicular to an axis through the middle." [BSPO:cjm]
xref: FBql:00005841
is_a: BSPO:0000070 ! anatomical region
[Term]
id: BSPO:0000055
name: anterior side
def: "An anatomical region that is the entire part of an anatomical structure anterior to a transverse plane and bounded on one side by the same transverse plane." [BSPO:RW]
synonym: "anterior" EXACT []
synonym: "rostral" EXACT []
xref: FBcv:0000053
xref: FBql:00005848
is_a: BSPO:0000054 ! anatomical side
relationship: anterior_to BSPO:0000056 ! posterior side
relationship: opposite_to BSPO:0000056 ! posterior side
relationship: starts_axis BSPO:0000013 ! anterior-posterior axis
[Term]
id: BSPO:0000056
name: posterior side
def: "An anatomical region that is the entire part of an anatomical structure posterior to a transverse plane and bounded on one side by the same transverse plane." [BSPO:RW, BSPO:wd]
synonym: "caudal" NARROW vertebrate []
synonym: "posterior" EXACT []
xref: FBcv:0000065
xref: FBql:00005849
is_a: BSPO:0000054 ! anatomical side
relationship: finishes_axis BSPO:0000013 ! anterior-posterior axis
relationship: posterior_to BSPO:0000055 ! anterior side
[Term]
id: BSPO:0000057
name: apical side
def: "Anatomical side that is located on the apical end of an organism or structure." [BSPO:wd]
synonym: "apical" EXACT []
xref: FBcv:0000054
xref: FBql:00005854
is_a: BSPO:0000054 ! anatomical side
relationship: opposite_to BSPO:0000058 ! basal side
relationship: starts_axis BSPO:0000014 ! apical-basal axis relative to substrate
[Term]
id: BSPO:0000058
name: basal side
def: "Anatomical side that is located on the basal end of an organism or structure." [BSPO:wd]
comment: The part of the organism attached to a substrate. Axis of symmetry.
synonym: "basal" EXACT []
xref: FBcv:0000055
xref: FBql:00005855
is_a: BSPO:0000054 ! anatomical side
relationship: finishes_axis BSPO:0000014 ! apical-basal axis relative to substrate
[Term]
id: BSPO:0000059
name: central side
def: "Anatomical side that is centrally located on an organism or structure." [BSPO:wd]
comment: central is not an axis direction
synonym: "central" EXACT []
xref: FBcv:0000056
xref: FBql:00015851
is_a: BSPO:0000054 ! anatomical side
[Term]
id: BSPO:0000060
name: contralateral side
def: "On the opposite side." [BSPO:cjm]
comment: inherited from flybase cv. not clear how this would be used. Suggest we obsolete, and use the corresponding relation.
synonym: "contralateral" EXACT []
xref: FBcv:0000057
xref: FBql:00005851
is_a: BSPO:0000054 ! anatomical side
[Term]
id: BSPO:0000061
name: proximal side
synonym: "proximal" EXACT []
xref: FBcv:0000066
xref: FBql:00005852
is_a: BSPO:0000054 ! anatomical side
relationship: opposite_to BSPO:0000062 ! distal side
relationship: starts_axis BSPO:0000015 ! proximal-distal axis
[Term]
id: BSPO:0000062
name: distal side
def: "Anatomical side that is distally located on an organism or structure." [BSPO:wd]
synonym: "distal" EXACT []
xref: FBcv:0000058
xref: FBql:00005853
is_a: BSPO:0000054 ! anatomical side
relationship: distal_to BSPO:0000061 ! proximal side
relationship: finishes_axis BSPO:0000015 ! proximal-distal axis
[Term]
id: BSPO:0000063
name: dorsal side
def: "An anatomical region that is the entire part of an anatomical structure dorsal to a horizontal plane and bounded on one side by the same transverse plane." [BSPO:wd]
synonym: "dorsal" EXACT []
xref: FBcv:0000059
xref: FBql:00005842
is_a: BSPO:0000054 ! anatomical side
relationship: dorsal_to BSPO:0000066 ! lateral side
relationship: opposite_to BSPO:0000068 ! ventral side
relationship: starts_axis BSPO:0000016 ! dorsal-ventral axis
[Term]
id: BSPO:0000064
name: postero-medial region
def: "Anatomical region that overlaps the posterior and medial regions of the body or body part." [BSPO:wd]
synonym: "posteromedial region" EXACT []
is_a: BSPO:0000072 ! posterior region
is_a: BSPO:0000083 ! medial region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000056 ! posterior side
intersection_of: overlaps BSPO:0000067 ! medial side
relationship: overlaps BSPO:0000056 ! posterior side
relationship: overlaps BSPO:0000067 ! medial side
created_by: Melissa Haendel
creation_date: 2009-09-10T08:56:39Z
[Term]
id: BSPO:0000065
name: ipsilateral side
def: "On the same side" [BSPO:cjm]
comment: inherited from flybase cv. not clear how this would be used. Suggest we obsolete, and use the corresponding relation.
synonym: "ipsilateral" EXACT []
xref: FBcv:0000062
xref: FBql:00005850
is_a: BSPO:0000054 ! anatomical side
[Term]
id: BSPO:0000066
name: lateral side
synonym: "lateral" EXACT []
xref: FBcv:0000063
xref: FBql:00005844
is_a: BSPO:0000054 ! anatomical side
[Term]
id: BSPO:0000067
name: medial side
comment: a point in the centre of the organism (where the left-right axis intersects the midsagittal plane)
synonym: "medial" EXACT []
xref: FBcv:0000064
xref: FBql:00005847
is_a: BSPO:0000054 ! anatomical side
[Term]
id: BSPO:0000068
name: ventral side
def: "An anatomical region that is the entire part of an anatomical structure ventral to a horizontal plane and bounded on one side by the same horizontal plane." [BSPO:RW, BSPO:wd]
synonym: "ventral" EXACT []
xref: FBcv:0000070
xref: FBql:00005843
is_a: BSPO:0000054 ! anatomical side
relationship: finishes_axis BSPO:0000016 ! dorsal-ventral axis
[Term]
id: BSPO:0000069
name: dorso-medial region
def: "Anatomical region that overlaps the dorsal and medial regions of the body or body part." [BSPO:wd]
synonym: "dorsomedial region" EXACT []
is_a: BSPO:0000079 ! dorsal region
is_a: BSPO:0000083 ! medial region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000063 ! dorsal side
intersection_of: overlaps BSPO:0000067 ! medial side
relationship: overlaps BSPO:0000063 ! dorsal side
relationship: overlaps BSPO:0000067 ! medial side
created_by: Melissa Haendel
creation_date: 2009-09-10T08:57:22Z
[Term]
id: BSPO:0000070
name: anatomical region
def: "A 3D region in space without well-defined compartmental boundaries; for example, the dorsal region of an ectoderm." [BSPO:cjm]
comment: to be merged into CARO
xref: FBql:00005841
is_a: CARO:0000003 ! anatomical structure
[Term]
id: BSPO:0000071
name: anterior region
def: "Anatomical region anteriorly located on the body or body part." [BSPO:wd]
xref: FBql:00005848
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000055 ! anterior side
relationship: overlaps BSPO:0000055 ! anterior side
[Term]
id: BSPO:0000072
name: posterior region
def: "Anatomical region posteriorly located on the body or body part." [BSPO:wd]
xref: FBql:00005849
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000056 ! posterior side
relationship: overlaps BSPO:0000056 ! posterior side
[Term]
id: BSPO:0000073
name: apical region
def: "Anatomical region located on the apical end on the body or body part." [BSPO:wd]
xref: FBql:00005854
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000057 ! apical side
relationship: overlaps BSPO:0000057 ! apical side
[Term]
id: BSPO:0000074
name: basal region
def: "Anatomical region located basally on the body or body part." [BSPO:wd]
xref: FBql:00005855
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000058 ! basal side
relationship: overlaps BSPO:0000058 ! basal side
[Term]
id: BSPO:0000075
name: central region
def: "Anatomical region centrally located on the body or body part." [BSPO:wd]
xref: FBql:00015851
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000059 ! central side
relationship: overlaps BSPO:0000059 ! central side
[Term]
id: BSPO:0000076
name: contralateral region
comment: inherited from flybase cv. not clear how this would be used
xref: FBql:00005851
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000060 ! contralateral side
relationship: overlaps BSPO:0000060 ! contralateral side
[Term]
id: BSPO:0000077
name: proximal region
def: "Anatomical region proximally located on the body or body part." [BSPO:wd]
xref: FBql:00005852
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000061 ! proximal side
relationship: overlaps BSPO:0000061 ! proximal side
[Term]
id: BSPO:0000078
name: distal region
def: "Anatomical region distally located on the body or body part." [BSPO:wd]
xref: FBql:00005853
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000062 ! distal side
relationship: overlaps BSPO:0000062 ! distal side
[Term]
id: BSPO:0000079
name: dorsal region
def: "Anatomical region dorsally located on the body or body part." [BSPO:wd]
xref: FBql:00005842
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000063 ! dorsal side
relationship: overlaps BSPO:0000063 ! dorsal side
[Term]
id: BSPO:0000080
name: dorso-lateral region
def: "Anatomical region that overlaps the dorsal and lateral regions of a body or body part." [BSPO:wd]
synonym: "dorsolateral region" EXACT []
xref: FBql:00005845
is_a: BSPO:0000079 ! dorsal region
is_a: BSPO:0000082 ! lateral region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000063 ! dorsal side
intersection_of: overlaps BSPO:0000066 ! lateral side
relationship: overlaps BSPO:0000063 ! dorsal side
relationship: overlaps BSPO:0000066 ! lateral side
[Term]
id: BSPO:0000081
name: ipsilateral region
xref: FBql:00005850
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000065 ! ipsilateral side
relationship: overlaps BSPO:0000065 ! ipsilateral side
[Term]
id: BSPO:0000082
name: lateral region
def: "Anatomical region laterally located on the body or body part." [BSPO:wd]
xref: FBql:00005844
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000066 ! lateral side
relationship: overlaps BSPO:0000066 ! lateral side
[Term]
id: BSPO:0000083
name: medial region
def: "Anatomical region medially located on the body or body part." [BSPO:wd]
xref: FBql:00005847
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000067 ! medial side
relationship: overlaps BSPO:0000067 ! medial side
[Term]
id: BSPO:0000084
name: ventral region
def: "Anatomical region ventrally located on the body or body part." [BSPO:wd]
xref: FBql:00005843
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000068 ! ventral side
relationship: overlaps BSPO:0000068 ! ventral side
[Term]
id: BSPO:0000085
name: ventro-lateral region
def: "Anatomical region that overlaps the ventral and lateral regions of a body or body part." [BSPO:wd]
comment: This is an example of a composition of two axis positions.
synonym: "ventrolateral region" EXACT []
xref: FBql:00005846
is_a: BSPO:0000082 ! lateral region
is_a: BSPO:0000084 ! ventral region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000066 ! lateral side
intersection_of: overlaps BSPO:0000068 ! ventral side
relationship: overlaps BSPO:0000066 ! lateral side
relationship: overlaps BSPO:0000068 ! ventral side
[Term]
id: BSPO:0000086
name: anatomical compartment
comment: to be merged into CARO
xref: FBql:00005873
xref: FMA:9647
is_a: CARO:0000003 ! anatomical structure
[Term]
id: BSPO:0000087
name: anterior compartment
xref: FBcv:0000031
xref: FBql:00005874
is_a: BSPO:0000086 ! anatomical compartment
[Term]
id: BSPO:0000088
name: compartment boundary
xref: FBcv:0000032
xref: FBql:00005878
is_a: BSPO:0000086 ! anatomical compartment
[Term]
id: BSPO:0000089
name: dorsal compartment
xref: FBcv:0000035
xref: FBql:00005876
is_a: BSPO:0000086 ! anatomical compartment
[Term]
id: BSPO:0000090
name: posterior compartment
xref: FBcv:0000036
xref: FBql:00005875
is_a: BSPO:0000086 ! anatomical compartment
[Term]
id: BSPO:0000091
name: ventral compartment
xref: FBcv:0000037
xref: FBql:00005877
is_a: BSPO:0000086 ! anatomical compartment
[Term]
id: BSPO:0000092
name: anatomical compartment boundary
comment: to be merged into CARO
xref: FBql:00005881
is_a: CARO:0000010 ! anatomical boundary
[Term]
id: BSPO:0000093
name: anterior/posterior compartment boundary
xref: FBcv:0000033
xref: FBql:00005880
is_a: BSPO:0000092 ! anatomical compartment boundary
[Term]
id: BSPO:0000094
name: dorsal/ventral compartment boundary
xref: FBcv:0000034
xref: FBql:00005879