Robust estimation of sd fails

[daoud-sie]

I am getting the following error message when performing dewaveBins:

> dewaveBins(d1k[,20], force=T) -> test
[1] "Bin size used is: 1000kb"
[1] "No input calibration set found, using pre-generated calibration set"
Applying deWaving ...
[1] "Started pre-processing"
[1] "Started computation of moving averages for tumor profiles"
[1] "Started robust estimation of sd for smoothed normal profiles"
Error in apply(sdmeanNor, 2, median) : dim(X) must have a positive length

With smaller bin sizes the error does not occur.

[daoud-sie]

The code I'm using is in the dewave branch:

https://github.com/tgac-vumc/QDNAseq.dev/tree/dewave

[daoud-sie]

For now, disable dewaving for 1000kb bins.