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_get_connectivities_tree_v1_0 #18

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masato-tsutsui opened this issue Jun 5, 2020 · 0 comments
Open

_get_connectivities_tree_v1_0 #18

masato-tsutsui opened this issue Jun 5, 2020 · 0 comments

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@masato-tsutsui
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Hi PAGA community,

I am wondering why 'inter_es' object is used to calculate the distance among partitions in _get_connectivities_tree_v1_0 definition as seen in _paga.py. I can find 'connectivities' object is used in the case of _get_connectivities_tree_v1_2. I am confused because I think of 'inter_es' as just sum of edges between each partition and that is strongly affected by the partition size.

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