diff --git a/README.md b/README.md index dbe48d1..c5e2085 100644 --- a/README.md +++ b/README.md @@ -1,7 +1,7 @@ # RegVelo's reproducibility repository This repository contains the jupyter notebooks to reproduce results shown in [RegVelo: gene-regulatory-informed dynamics of single cells](https://doi.org/10.1101/2024.12.11.627935) and has been rendered as a Jupyter book [here](https://theislab.github.io/regvelo_reproducibility/index.html). -All datasets are freely available via a [FigShare project](https://figshare.com/account/home#/projects/226860). +All datasets are freely available via a [FigShare project](https://figshare.com/projects/RegVelo_reproducibility_datasets/226860). ## Installation @@ -18,7 +18,7 @@ python -m ipykernel install --user --name regvelo-py310 --display-name "regvelo- ## Data -All datasets are freely available via a [FigShare project](https://figshare.com/account/home#/projects/226860). To run the provided analyses, +All datasets are freely available via a [FigShare project](https://figshare.com/projects/RegVelo_reproducibility_datasets/226860). To run the provided analyses, download the corresponding data into the `data/` directory. For each dataset the directory `raw/` contains the data as obtained by the original study or in its raw format; similarly, in `processed/`, we collect all processed data.