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R_knitr_demo.html
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<div id="content">
<h1 class="title">Example of R with knitr and ox-ravel</h1>
<div id="table-of-contents">
<h2>Table of Contents</h2>
<div id="text-table-of-contents">
<ul>
<li><a href="#org61ecea8">1. Example R code</a>
<ul>
<li><a href="#orgb50471e">1.1. Minimal example</a></li>
<li><a href="#org3d844bd">1.2. ggplot2 examples</a></li>
</ul>
</li>
</ul>
</div>
</div>
<div id="outline-container-org61ecea8" class="outline-2">
<h2 id="org61ecea8"><span class="section-number-2">1</span> Example R code</h2>
<div class="outline-text-2" id="text-1">
</div>
<div id="outline-container-orgb50471e" class="outline-3">
<h3 id="orgb50471e"><span class="section-number-3">1.1</span> Minimal example</h3>
<div class="outline-text-3" id="text-1-1">
<p>
Show some minimal example code from <a href="https://yihui.name/knitr/demo/minimal/">https://yihui.name/knitr/demo/minimal/</a>
</p>
<div class="chunk" id="unnamed-chunk-1"><div class="rcode"><div class="source"><pre class="knitr r"><span class="hl kwd">set.seed</span><span class="hl std">(</span><span class="hl num">1213</span><span class="hl std">)</span>
<span class="hl std">x</span> <span class="hl kwb">=</span> <span class="hl kwd">cumsum</span><span class="hl std">(</span><span class="hl kwd">rnorm</span><span class="hl std">(</span><span class="hl num">100</span><span class="hl std">))</span>
<span class="hl kwd">mean</span><span class="hl std">(x)</span>
</pre></div>
<div class="output"><pre class="knitr r">[1] -1.939758
</pre></div>
<div class="source"><pre class="knitr r"><span class="hl kwd">plot</span><span class="hl std">(x,</span> <span class="hl kwc">type</span> <span class="hl std">=</span> <span class="hl str">'l'</span><span class="hl std">)</span>
</pre></div>
</div><div class="rimage default"><img src="figure/demo-unnamed-chunk-1-1.png" title="plot of chunk unnamed-chunk-1" alt="plot of chunk unnamed-chunk-1" class="plot" /></div></div>
</div>
</div>
<div id="outline-container-org3d844bd" class="outline-3">
<h3 id="org3d844bd"><span class="section-number-3">1.2</span> ggplot2 examples</h3>
<div class="outline-text-3" id="text-1-2">
<p>
Show some example plots from <a href="https://www.mailman.columbia.edu/sites/default/files/media/fdawg_ggplot2.html">https://www.mailman.columbia.edu/sites/default/files/media/fdawg_ggplot2.html</a>
</p>
<div class="chunk" id="unnamed-chunk-2"><div class="rcode"><div class="source"><pre class="knitr r"><span class="hl kwd">library</span><span class="hl std">(ggplot2)</span>
<span class="hl std">scatter</span> <span class="hl kwb"><-</span> <span class="hl kwd">ggplot</span><span class="hl std">(</span><span class="hl kwc">data</span><span class="hl std">=iris,</span> <span class="hl kwd">aes</span><span class="hl std">(</span><span class="hl kwc">x</span> <span class="hl std">= Sepal.Length,</span> <span class="hl kwc">y</span> <span class="hl std">= Sepal.Width))</span>
<span class="hl std">scatter</span> <span class="hl opt">+</span> <span class="hl kwd">geom_point</span><span class="hl std">(</span><span class="hl kwd">aes</span><span class="hl std">(</span><span class="hl kwc">color</span><span class="hl std">=Species,</span> <span class="hl kwc">shape</span><span class="hl std">=Species))</span> <span class="hl opt">+</span>
<span class="hl kwd">xlab</span><span class="hl std">(</span><span class="hl str">"Sepal Length"</span><span class="hl std">)</span> <span class="hl opt">+</span> <span class="hl kwd">ylab</span><span class="hl std">(</span><span class="hl str">"Sepal Width"</span><span class="hl std">)</span> <span class="hl opt">+</span>
<span class="hl kwd">ggtitle</span><span class="hl std">(</span><span class="hl str">"Sepal Length-Width"</span><span class="hl std">)</span>
</pre></div>
</div><div class="rimage default"><img src="figure/demo-unnamed-chunk-2-1.png" title="plot of chunk unnamed-chunk-2" alt="plot of chunk unnamed-chunk-2" class="plot" /></div><div class="rcode">
<div class="source"><pre class="knitr r"><span class="hl kwd">boxplot</span><span class="hl std">(Sepal.Length</span><span class="hl opt">~</span><span class="hl std">Species,</span><span class="hl kwc">data</span><span class="hl std">=iris,</span>
<span class="hl kwc">xlab</span><span class="hl std">=</span><span class="hl str">"Species"</span><span class="hl std">,</span> <span class="hl kwc">ylab</span><span class="hl std">=</span><span class="hl str">"Sepal Length"</span><span class="hl std">,</span> <span class="hl kwc">main</span><span class="hl std">=</span><span class="hl str">"Iris Boxplot"</span><span class="hl std">)</span>
</pre></div>
</div><div class="rimage default"><img src="figure/demo-unnamed-chunk-2-2.png" title="plot of chunk unnamed-chunk-2" alt="plot of chunk unnamed-chunk-2" class="plot" /></div></div>
</div>
</div>
</div>
</div>
<div id="postamble" class="status">
<p class="author">Author: Tim Howes</p>
<p class="date">Created: 2018-01-17 Wed 16:54</p>
<p class="validation"></p>
</div>
</body>
</html>