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DESCRIPTION
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DESCRIPTION
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Package: MetCirc
Type: Package
Title: Navigating mass spectral similarity in high-resolution MS/MS
metabolomics data
metabolomics data
Version: 1.29.2
Date: 2023-04-18
Authors@R: c(person(given = "Thomas", family = "Naake",
email = "[email protected]",
role = c("aut","cre")),
person(given = "Johannes", family = "Rainer",
email = "[email protected]",
role = "ctb"),
person(given = "Emmanuel", family = "Gaquerel",
email = "[email protected]", role = "aut"))
Author: Thomas Naake <[email protected]>,
Johannes Rainer <[email protected]> and Emmanuel Gaquerel
Maintainer: Thomas Naake <[email protected]>
VignetteBuilder: knitr
Depends:
R (>= 3.5),
amap (>= 0.8),
circlize (>= 0.3.9),
scales (>= 0.3.0),
shiny (>= 1.0.0),
Spectra (>= 1.4.3)
Imports:
ggplot2 (>= 3.2.1),
MsCoreUtils (>= 1.9.2),
S4Vectors (>= 0.22.0)
Suggests:
BiocGenerics,
graphics (>= 3.5),
grDevices (>= 3.5),
knitr (>= 1.11),
testthat (>= 2.2.1)
biocViews: ShinyApps, Metabolomics, MassSpectrometry, Visualization
Description: MetCirc comprises a workflow to interactively explore
high-resolution MS/MS metabolomics data. MetCirc uses the Spectra object
infrastructure defined in the package Spectra that stores
MS/MS spectra. MetCirc offers functionality to calculate
similarity between precursors based on the normalised dot product, neutral
losses or user-defined functions and
visualise similarities in a circular layout. Within the interactive framework
the user can annotate MS/MS features based on their similarity to
(known) related MS/MS features.
License: GPL (>= 3)
RoxygenNote: 7.2.2