Learning the Variant Call Format
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Updated
Mar 25, 2024 - Perl
Learning the Variant Call Format
BioC++ Input/Output library
Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.
A Nextflow variant normalization pipeline based on vt and bcftools
The main aim of this little project is to compare the European allele frequencies of the 1k genomes project with the gnomad frequencies.
Convert SV VCFs to BED, a wrapper for bcftools query
This script filters false positive alleles from poolseq VCF file created with bcftools.
Scripts used on a cluster that demonstrate vcf file manipulation and preparation.
Merge in parallel, speeding up bcftools merge
convert genotype array output into annotated IBD segments
a tool for quickly getting the correct bcftools command
Reusable and maintained Luigi tasks to incorporate in bioinformatics pipelines
A collection of scripts for filtering annotated variant call format files
This directory contains material that I've used in different courses
1,674 S.cerevisiae genomics data
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