Align reads over a reference genome, filter aligned-reads, and mark duplicates
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Updated
Jul 14, 2024 - Python
Align reads over a reference genome, filter aligned-reads, and mark duplicates
WebAssembly modules for genomics
nextflow ATACseq pipeline for GG02
Repository for course project in Bioinformatics Institute 2023-2024
Snakemake pipeline for Popoolation and Popoolation2
Snakemake workflow used to call peaks with Macs2
This project explores the PBRM1-PIAS1 interaction in epithelial differentiation through ChIP-seq analysis, highlighting EZH2's role and implications for cholesterol biosynthesis in cellular processes.
Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
Bowtie2 v2.5.2 Dockerfile Native for Apple M1+ Silicon (ARM64) and Intel/AMD (x86_64) Containers
This is a repository for a seminar on Bowtie2 and its use of the Burrows-Wheeler Transform and FM-index in short-read sequence mapping.
Detecting contamination in NGS data and multi-species analysis
Build Docker container for Bowtie 2 and (optionally) convert to Apptainer/Singularity.
Bioconductor package: an R wrapper for Bowtie2 and AdapterRemoval
The repository contain directories of projects done during the bioinformatics degree program
RNA-seq code with Bowtie alignment and generating strain-specific counts using Emase
Some scripts to make your bioinformatics analyses reproducible and a bit easy 🤓
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