#
gene-regulatory-network
Here are
67 public repositories
matching this topic...
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
Updated
Apr 8, 2024
Python
High dimensional weighted gene co-expression network analysis
Context specific and dynamic gene regulatory network reconstruction and analysis
Updated
Aug 27, 2024
Python
netZooR is a network biology package implemented in R.
netZooPy is a network biology package implemented in Python.
Updated
Nov 1, 2024
Jupyter Notebook
Fast visualization tool for large-scale and high dimensional single-cell data
Updated
Mar 5, 2023
Python
PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data
Updated
Oct 6, 2023
MATLAB
Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
Updated
Dec 6, 2024
Jupyter Notebook
R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
single cell foundation model for Gene network inference and more
Updated
Dec 7, 2024
Jupyter Notebook
netZooM is a network biology package implemented in MATLAB.
Updated
Jun 28, 2023
MATLAB
netZooC is a network biology package implemented in C.
Adversarial generation of gene expression data using Generative Adversarial Networks
Updated
Oct 26, 2021
Jupyter Notebook
Code for scKINETICS (ISMB 2023)
Updated
Oct 23, 2023
Jupyter Notebook
Causal inference, differential expression, and co-expression for scRNA-seq
Updated
Nov 4, 2021
Python
Diffusion model for gene regulatory network inference.
Updated
May 23, 2024
Python
Evaluation framework for computationally inferred gene networks from single-cell data.
Updated
Oct 22, 2024
Jupyter Notebook
A deep model infers gene regulation networks from scRNA-seq data.
Updated
Aug 1, 2024
Jupyter Notebook
R and MATLAB scripts for MAGICAL
A scalable method to infer fate specific gene regulatory network from single cell gene expression data
Improve this page
Add a description, image, and links to the
gene-regulatory-network
topic page so that developers can more easily learn about it.
Curate this topic
Add this topic to your repo
To associate your repository with the
gene-regulatory-network
topic, visit your repo's landing page and select "manage topics."
Learn more
You can’t perform that action at this time.