Base code for NeuroIPS 2023 paper on NMDA activation function on transformers
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Updated
Sep 21, 2022 - Python
Base code for NeuroIPS 2023 paper on NMDA activation function on transformers
Scripts for reproducing the figures of Hippocampal-Prefrontal Interactions during Spatial Decision-Making, Tavares & Tort 2020.
hippocampus volume quantification
[Software for Master's thesis] ∘ Real-time signal detection for closed-loop, in-vivo neuroscience
Scripts for reproducing the figures of Hippocampal-Prefrontal Interactions during Spatial Decision-Making, Tavares & Tort 2020.
The final project of "Applying AI to 3D Medical Imaging Data" from "AI for Healthcare" nanodegree - Udacity.
Code for my paper: "Theta sequences as eligibility traces: a biological solution to credit assignment"
Full-scale biophysical model of the dentate gyrus
Custom code (Python or Matlab) to compute centripetal propagation from astrocytic calcium recordings using pixel-wise correlation functions
Hippocampal segmentation using the UNet network for each axis, inspired by https://github.com/MICLab-Unicamp/e2dhipseg
Current code for my hippocampal morphometry workflow, based on the hippodeep_pytorch segmentation program and the SlicerSALT shape analysis software.
Simulations concerning the Hippocampal CA3 network
SynapticVes-Py. Python code to support 3D quantitative analysis of presynaptic active zones in hippocampal mossy fiber boutons using electron tomograms and IMOD model output.
This repository contains all the files and related directions to implement in MATLAB environment the episodic memory model developed by Pirazzini and Ursino in “Modeling the contribution of theta-gamma coupling to sequential memory, imagination, and dreaming, Frontiers in Neural Circuits, 2024” (DOI: https://doi.org/10.3389/fncir.2024.1326609)
An open-source package that offer fully-functional spike-based bio-inspired hippocampal memory models implemented with SNN technology in the SpiNNaker hardware in Python
The LCN-HippoModel is a biophysically realistic model of CA1 pyramidal cells aimed to get novel insights on firing dynamics in deep and superficial populations during the theta rhythm.
Code for the paper "A hippocampal model for behavioral time acquisition and fast bidirectional replay of spatio-temporal memory sequences"
CA1 model repository
This small graphical user interface helps to map the anatomical borders of dentate gyrus in an imaged volume onto morphologies that had been reconstructed in that volume.
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