macs2
Here are 17 public repositories matching this topic...
This project explores the PBRM1-PIAS1 interaction in epithelial differentiation through ChIP-seq analysis, highlighting EZH2's role and implications for cholesterol biosynthesis in cellular processes.
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Feb 9, 2024 - Jupyter Notebook
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Dec 4, 2017
Sequencing data preprocessing
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Jun 18, 2018 - R
First ever Python Project: Allinging the highest points of MACS2 peaks with positions around gene starts from a gff file.
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Jun 26, 2023 - Python
Snakemake Pipeline for the Analyses of ChIP-seq data in Cancer samples
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Apr 16, 2024 - Python
Snakemake workflow used to call peaks with Macs2
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Apr 16, 2024 - Python
Multiple-replica multiple-condition Macs2 ChIPSeq wrapper
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Apr 27, 2024 - Perl
DISMISS is an R script, which as an additional step in MeDIP-Seq data analysis workflow, enables the allocation of strands to methylated DNA regions. It does this by analyzing the proportions of first mate reads aligning to the methylated locus from the plus and minus strands.
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May 13, 2016 - R
CCBR pipeline for preliminary QC and peak calling from ATACseq datasets
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Apr 23, 2024 - Shell
Benchmarking ChIP-seq peak callers
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Dec 11, 2018 - Python
ChIP-seq peak-calling, QC and differential analysis pipeline.
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Jul 11, 2024 - Nextflow
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