ChIP-seq peak-calling, QC and differential analysis pipeline.
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Updated
Jul 11, 2024 - Nextflow
ChIP-seq peak-calling, QC and differential analysis pipeline.
Benchmarking ChIP-seq peak callers
DISMISS is an R script, which as an additional step in MeDIP-Seq data analysis workflow, enables the allocation of strands to methylated DNA regions. It does this by analyzing the proportions of first mate reads aligning to the methylated locus from the plus and minus strands.
CCBR pipeline for preliminary QC and peak calling from ATACseq datasets
Multiple-replica multiple-condition Macs2 ChIPSeq wrapper
This project explores the PBRM1-PIAS1 interaction in epithelial differentiation through ChIP-seq analysis, highlighting EZH2's role and implications for cholesterol biosynthesis in cellular processes.
Sequencing data preprocessing
First ever Python Project: Allinging the highest points of MACS2 peaks with positions around gene starts from a gff file.
Snakemake Pipeline for the Analyses of ChIP-seq data in Cancer samples
Snakemake workflow used to call peaks with Macs2
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