circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
Using RNA-Seq data to improve microRNA target prediction accuracy in animals
A command line version of the psRNATarget workflow that predicts potential miRNA target locations on a genome.
miRSM: Inferring miRNA sponge modules by integrating expression data and miRNA-target binding information
Scanning sample-specific miRNA regulation from bulk and single-cell RNA-sequencing data
Research project undertaken in Computational Genomics at the University of Pittsburgh. with Dr. Miler Lee and students to understand Maternal-to-Zygotic transition in Xenopus laevis
Web application for accessing data generated by FilTar
Masters' thesis: Construction & analysis of miRNA-RAB sub-networks in human RAB associated disorders- A network biology approach
My Final Year Project - miRNA Target Prediction by adapting it to Next Sentance Prediction and assessing the performance of SOTA NLP architectures on the problem.
multiMiR package in R, providing gene-miRNA-lncRNA interactions for ceRNA network construction
Database of pairwise consensuses for miR-mRNA target interactions
R package for retrieving miRNA data from the web
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