ngs-analysis
Here are 192 public repositories matching this topic...
Diagnostic performance of HPV-DeepSeek, a hybrid capture whole genome sequencing liquid biopsy for HPV-associated cancers
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Nov 9, 2023
Python scripts for design of 5'/3' RACE-based NGS panels, and the following data analysis
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Sep 6, 2023 - Python
Análisis genómicos y transcriptómicos con plataforma NGS
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Feb 18, 2024 - HTML
Leveraging WES short reads for PAN-EXOME creation and analysis.
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Feb 1, 2024 - WDL
A repository for maintaining assignments and projects, from courses done in bioinformatics and CB.
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Jan 2, 2022 - Jupyter Notebook
Genomics unit analysis pipelines toolkit: a collection of NGS workflows writtin in python3 and snakemake
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Sep 20, 2023 - Python
A comprehensive workflow for de novo assembly of whole-genome shotgun sequencing data using Velvet, followed by BLAST searches to analyze assembled contigs.
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Nov 26, 2023 - HTML
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Mar 17, 2018 - Python
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Apr 18, 2023
GUI coupled to a local database that centralize all NGS variant data and annotations, and to provide powerful filtering tools that are easily accessible to the biologist.
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Jul 1, 2024 - Java
Mining CNV based on rice Nipponbare genome using resequencing data.
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Jan 6, 2023 - Perl
Custom scripts and workflows used in the genomics and population analysis of oat crown rust (Puccinia coronata f. sp. avenae) preprint (bioRxiv 2023.09.18.557855). All steps performed in Linux environment or R.
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Sep 21, 2023 - Python
Hunting for CMV and HHV-6 in cfDNA sequence
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Jan 28, 2020 - R
A genetic sequence analysis on calculating the GC contents and CpG deficiencies on multiple coronaviruses (SAR-CoV, SAR-CoV-2, MERS-CoV and 2 two bat derived SARS-like coronaviruses) to see which coronavirus has the most potentially effective mechanism to escape the anti-virus activities on human bodies.
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Jan 2, 2021 - HTML
CRISPRSeqSim is a tool that simulates results of CRISPR/cas editing fragments target sequencing.
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Jul 10, 2023 - Python
Variant Calling and Annotation using PacBio Hi-Fi Reads
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Jul 3, 2024 - WDL
Example files for Benin NGS capacity building project
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Oct 31, 2017 - HTML
CAYA Analysis
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Apr 20, 2020 - Jupyter Notebook
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